[Blends-commit] [Git][blends-team/science][master] 3 commits: Preparing for Bookworm release

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Blends Team / science


Commits:
3f839762 by Andreas Tille at 2023-05-22T14:58:31+02:00
Preparing for Bookworm release

- - - - -
f2fbbb1c by Andreas Tille at 2023-05-22T15:00:37+02:00
Add changelog entry with last changes inside testing package pool

- - - - -
b66e3534 by Andreas Tille at 2023-05-22T15:02:48+02:00
Upload to unstable

- - - - -


3 changed files:

- debian/changelog
- debian/control
- + dependency_data/debian-science_1.14.5.json


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,37 @@
+debian-science (1.14.5) unstable; urgency=medium
+
+  * Preparing Bookworm release
+
+  * start of automatic changelog entry * 
+  
+  * Changes in metapackage dependencies
+   -science-dataacquisition
+    added:
+      Recommends:  vnlog
+   -science-dataacquisition-dev
+    added:
+      Recommends:  libvnlog-perl, python3-vnlog, libvnlog-dev
+   -science-datamanagement
+    added:
+      Recommends:  python3-mdp
+   -science-mathematics-dev
+    added:
+      Recommends:  veccore-dev, libvdt-dev
+   -science-nanoscale-physics
+    added:
+      Recommends:  voronota
+   -science-nanoscale-physics-dev
+    added:
+      Recommends:  vecgeom-dev, ufo-filters, libufo-dev
+   -science-viewing
+    added:
+      Recommends:  tulip
+   -science-viewing-dev
+    added:
+      Recommends:  python3-vedo, libtulip-dev
+
+ -- Andreas Tille <tille at debian.org>  Mon, 22 May 2023 15:02:11 +0200
+
 debian-science (1.14.4) unstable; urgency=medium
 
   [ Alastair McKinstry ]


=====================================
debian/control
=====================================
@@ -287,8 +287,8 @@ Recommends: clickhouse-tools,
             open3d-gui,
             open3d-tools,
             python3-pyvisa,
-            python3-sardana,
             segyio-bin,
+            vnlog,
             xlsx2csv,
             xyscan
 Suggests: binoculars,
@@ -301,6 +301,7 @@ Suggests: binoculars,
           opendap,
           plot-digitizer,
           python3-pytango,
+          python3-sardana,
           python3-streamz,
           python3-taurus,
           qtdmm,
@@ -329,6 +330,8 @@ Recommends: libgetdata-dev,
             libopenrefine-vicino-java,
             libsdsl-dev,
             libtango-dev,
+            libvnlog-dev,
+            libvnlog-perl,
             mseed2sac,
             python3-aws-xray-sdk,
             python3-csvkit,
@@ -340,6 +343,7 @@ Recommends: libgetdata-dev,
             python3-pymeasure,
             python3-segyio,
             python3-tango,
+            python3-vnlog,
             python3-xrayutilities
 Suggests: libbcm2835-dev,
           python3-asciitree,
@@ -365,6 +369,7 @@ Recommends: datalad,
             nexus-tools,
             plfit,
             python3-jdata,
+            python3-mdp,
             python3-nxs,
             python3-pyzoltan,
             virtuoso-opensource
@@ -1214,7 +1219,6 @@ Depends: ${misc:Depends},
          science-config (= ${source:Version}),
          science-tasks (= ${source:Version})
 Recommends: agda,
-            alt-ergo,
             boolector,
             clasp,
             coinor-cbc,
@@ -1237,7 +1241,8 @@ Recommends: agda,
             toulbar2,
             why3,
             z3
-Suggests: coala,
+Suggests: alt-ergo,
+          coala,
           coinor-libcoinmp-dev,
           cvc3,
           mace2,
@@ -1475,7 +1480,6 @@ Depends: ${misc:Depends},
 Recommends: code-saturne-bin,
             code-saturne-include,
             coinor-libcoinmp-dev,
-            cppad,
             fenics,
             fflas-ffpack,
             fftw-dev,
@@ -1583,6 +1587,7 @@ Recommends: code-saturne-bin,
             libsymmetrica2-dev,
             libtachyon-dev,
             libtnt-dev,
+            libvdt-dev,
             libviennacl-dev,
             libxsmm-dev,
             libzn-poly-dev,
@@ -1622,8 +1627,10 @@ Recommends: code-saturne-bin,
             python3-ufl,
             sfftw-dev,
             slepc-dev,
-            trilinos-all-dev
+            trilinos-all-dev,
+            veccore-dev
 Suggests: cfortran,
+          cppad,
           fflas-ffpack-dev-doc,
           fflas-ffpack-user-doc,
           givaro-dev-doc,
@@ -1871,7 +1878,8 @@ Recommends: abinit,
             science-numericalcomputation,
             scilab,
             udav,
-            v-sim
+            v-sim,
+            voronota
 Suggests: ape,
           atompaw,
           axiom,
@@ -1961,6 +1969,7 @@ Recommends: abinit-doc,
             libspfft-dev,
             libssm-dev,
             libsymspg-dev,
+            libufo-dev,
             libxc-dev,
             netcdf-doc,
             pyfai,
@@ -1977,7 +1986,9 @@ Recommends: abinit-doc,
             python3-sasdata,
             python3-sasmodels,
             r-cran-rnetcdf,
-            science-mathematics-dev
+            science-mathematics-dev,
+            ufo-filters,
+            vecgeom-dev
 Suggests: gsl-doc-info,
           gsl-doc-pdf,
           gsl-ref-html | gsl-ref-psdoc,
@@ -2150,7 +2161,6 @@ Recommends: admesh,
             python3-sfepy,
             python3-sparse,
             python3-tables,
-            python3-theano,
             python3-xarray,
             pyzo,
             qsopt-ex,
@@ -2213,6 +2223,7 @@ Suggests: calculix-ccx-doc,
           python3-spyder-reports,
           python3-spyder-unittest,
           python3-stopt,
+          python3-theano,
           python3-threadpoolctl,
           python3-woo,
           python3-zarr,
@@ -2872,6 +2883,7 @@ Recommends: 3depict,
             r-cran-sjplot,
             solvespace,
             trend,
+            tulip,
             udav,
             veusz,
             vistrails,
@@ -2947,6 +2959,7 @@ Recommends: gnudatalanguage,
             libqwtplot3d-qt5-dev,
             libslvs1-dev,
             libsoqt520-dev,
+            libtulip-dev,
             libvtk9-dev,
             libvtk9-java,
             libvtk9-qt-dev,
@@ -2962,6 +2975,7 @@ Recommends: gnudatalanguage,
             python3-qwt3d-qt5,
             python3-skimage,
             python3-skimage-lib,
+            python3-vedo,
             python3-vispy,
             python3-vtk9,
             vtk9-examples


=====================================
dependency_data/debian-science_1.14.5.json
=====================================
@@ -0,0 +1 @@
+{"viewing-dev": {"depends": [], "suggests": ["libcollada-dom2.4-dp-dev", "python3-opentsne"], "recommends": ["pdl", "gnudatalanguage", "libgrits-dev", "python3-matplotlib", "libgnuplot-iostream-dev", "libqglviewer-dev", "python3-gnuplot", "python3-gnuplotlib", "libcoin-dev", "libsoqt520-dev", "libvtk9-dev", "libvtk9-qt-dev", "python3-vtk9", "libvtk9-java", "vtk9-examples", "python3-pivy", "libgtkdataboxmm-dev", "libgtkdatabox-dev", "inventor-dev", "libqtexengine-dev", "libqwtplot3d-qt5-dev", "python3-qwt3d-qt5", "python3-qwt", "libchealpix-dev", "python3-skimage", "python3-skimage-lib", "python3-matplotlib-venn", "libplplot-dev", "python3-plplot-qt", "libglm-dev", "libglbinding-dev", "libforge-dev", "libgli-dev", "libglobjects-dev", "libslvs1-dev", "libgts-dev", "python3-vispy", "libgl2ps-dev", "libqglviewer-dev-qt5", "python3-qwt", "liborigin2-dev", "libopen3d-dev", "python3-open3d", "python3-symfit", "libtulip-dev", "python3-vedo"], "ignore": [], "avoid": []}, "statistics": {"depends": [], "suggests": ["r-cran-spc", "r-cran-mlmrev", "r-cran-gnm", "r-cran-brglm", "science-mathematics", "libtamuanova-dev", "r-cran-blockmodeling", "r-cran-catools", "r-cran-fastmatch", "r-cran-futile.logger", "r-cran-futile.options", "r-cran-igraph", "python3-leidenalg", "python3-pynndescent", "r-cran-lambda.r", "r-cran-magrittr", "r-cran-nnls", "r-cran-r.oo", "r-cran-r.utils", "libapophenia2-dev", "r-cran-bbmle", "r-cran-ellipse", "r-cran-irlba", "r-cran-luminescence", "r-cran-minpack.lm", "r-cran-princurve", "r-cran-rngtools", "node-shiny-server-client", "libicb-utils-java"], "recommends": ["elpa-ess", "littler", "r-recommended", "rkward", "r-cran-mapproj", "r-cran-abind", "r-cran-arm", "r-cran-bayesm", "r-cran-boot", "r-cran-cairodevice", "r-cran-ca", "r-cran-car", "r-cran-caret", "r-cran-chron", "r-cran-cluster", "r-cran-coda", "r-cran-codetools", "r-cran-date", "r-cran-dbi", "r-cran-eco", "r-cran-effects", "r-cran-erm", "r-cran-fbasics", "r-cran-fcopulae", "r-cran-fecofin", "r-cran-fextremes", "r-cran-fmultivar", "r-cran-foptions", "r-cran-foreign", "r-cran-fportfolio", "r-cran-gam", "r-cran-gdata", "r-cran-geepack", "r-cran-glmnet", "r-cran-gmodels", "r-cran-goftest", "r-cran-gplots", "r-cran-gregmisc", "r-cran-gtools", "r-cran-hdf5", "r-cran-hmisc", "r-cran-its", "r-cran-kernsmooth", "r-cran-lattice", "r-cran-latticeextra", "r-cran-lavaan", "r-cran-lhs", "r-cran-lme4", "r-cran-lmtest", "r-cran-mapdata", "r-cran-maps", "r-cran-maptree", "r-cran-matchit", "r-cran-matrix", "r-cran-mcmcpack", "r-cran-mgcv", "r-cran-misc3d", "r-cran-modelmetrics", "r-cran-mnp", "r-cran-multcomp", "r-cran-mvtnorm", "r-cran-nlme", "r-cran-pscl", "r-cran-psy", "r-cran-qtl", "r-cran-quadprog", "r-cran-qvcalc", "r-cran-randomfieldsutils", "r-cran-raschsampler", "r-cran-rcmdr", "r-cran-relimp", "r-cran-rggobi", "r-cran-rgl", "r-cran-rgtk2", "r-cran-rmpi", "r-cran-rms", "r-cran-rmysql", "r-cran-rodbc", "r-cran-rpart", "r-cran-rpvm", "r-cran-rquantlib", "r-cran-rserve", "r-cran-rsprng", "r-cran-sandwich", "r-cran-sem", "r-cran-sm", "r-cran-snow", "r-cran-strucchange", "r-cran-survival", "r-cran-timedate", "r-cran-tkrplot", "r-cran-tseries", "r-cran-vgam", "r-cran-mass", "r-cran-xml", "r-cran-zelig", "r-cran-zoo", "r-cran-msm", "r-cran-amore", "r-cran-teachingdemos", "r-cran-expm", "r-cran-ggplot2", "r-cran-reshape2", "psignifit", "python3-scipy", "r-cran-vcd", "r-cran-vcdextra", "r-cran-corpcor", "r-cran-bradleyterry2", "r-cran-estimability", "r-cran-elliptic", "r-cran-logspline", "r-cran-lsmeans", "r-cran-modeltools", "r-cran-rinside", "r-cran-pbapply", "r-cran-pbivnorm", "r-cran-contfrac", "r-cran-desolve", "r-cran-hypergeo", "r-cran-coin", "r-cran-bayesfactor", "r-cran-afex", "r-cran-bms", "r-cran-conting", "r-cran-permute", "python3-statsmodels", "r-cran-spam", "r-cran-spatstat", "r-cran-deldir", "r-cran-fastcluster", "r-cran-statmod", "python3-openturns", "python3-persalys", "persalys", "python3-pandas", "r-cran-ecodist", "r-cran-energy", "r-cran-mvnormtest", "r-cran-rsdmx", "r-cran-acepack", "r-cran-fcalendar", "rstudio", "apophenia-bin", "r-cran-nmf", "pspp", "datamash", "python3-bayespy", "libdistlib-java"], "ignore": [], "avoid": []}, "neuroscience-cognitive": {"depends": [], "suggests": ["science-typesetting", "science-psychophysics", "python-mvpa2", "fieldtrip", "eeglab", "debruijn", "freesurfer", "xnat", "python3-bioxtasraw", "pysurfer", "connectomeviewer", "hid"], "recommends": ["psignifit", "amide", "dicomnifti", "minc-tools", "medcon", "xmedcon", "nifti-bin", "python3-nibabel", "python3-pydicom", "fsl", "fslview", "nifti2dicom", "qnifti2dicom", "caret", "praat", "slicer", "dicom3tools", "voxbo", "bioimagesuite", "afni", "mni-autoreg", "mni-n3", "brainvisa", "lipsia", "openmeeg-tools", "mricron", "itksnap", "python3-statsmodels", "spm8", "iqr", "mriconvert", "python3-pyxnat"], "ignore": [], "avoid": []}, "social": {"depends": [], "suggests": [], "recommends": ["opensesame"], "ignore": [], "avoid": []}, "highenergy-physics": {"depends": [], "suggests": ["paw-demos", "geant321-doc", "lhapdf-pdfsets-minimal", "root-system-doc"], "recommends": ["cernlib", "cernlib-base", "cernlib-core", "cernlib-extras", "dzedit", "kuipc", "kxterm", "nypatchy", "pawserv", "zftp", "paw", "paw++", "cernlib-montecarlo", "geant321", "feynmf", "looptools", "octave-lhapdf", "root-macro-fastjet", "pythia8-root-interface", "libroot-bindings-python5.34", "libroot-bindings-ruby5.34", "libroot-graf3d-gl5.34", "libroot-io-xmlparser5.34", "libroot-math-mathmore5.34", "libroot-math-unuran5.34", "libroot-misc-memstat5.34", "libroot-misc-table5.34", "libroot-net-bonjour5.34", "libroot-net-ldap5.34", "libroot-roofit5.34", "libroot-geom5.34", "libroot-graf2d-gpad5.34", "libroot-graf2d-graf5.34", "libroot-graf2d-postscript5.34", "libroot-graf3d-eve5.34", "libroot-graf3d-g3d5.34", "libroot-gui5.34", "libroot-gui-ged5.34", "libroot-hist5.34", "libroot-hist-spectrum5.34", "libroot-html5.34", "libroot-io5.34", "libroot-math-foam5.34", "libroot-math-genvector5.34", "libroot-math-mathcore5.34", "libroot-math-matrix5.34", "libroot-math-minuit5.34", "libroot-math-mlp5.34", "libroot-math-physics5.34", "libroot-math-quadp5.34", "libroot-math-smatrix5.34", "libroot-math-splot5.34", "libroot-misc-minicern5.34", "libroot-montecarlo-eg5.34", "libroot-montecarlo-vmc5.34", "libroot-net5.34", "libroot-net-auth5.34", "libroot-proof5.34", "libroot-proof-proofplayer5.34", "libroot-tmva5.34", "libroot-tree5.34", "libroot-tree-treeplayer5.34", "libroot-core5.34", "root-plugin-graf2d-asimage", "root-plugin-geom-gdml", "root-plugin-gui-qt", "root-plugin-graf2d-qt", "root-plugin-math-fftw3", "root-plugin-math-minuit2", "root-plugin-montecarlo-pythia8", "root-plugin-net-globus", "root-plugin-net-krb5", "root-plugin-sql-mysql", "root-plugin-sql-odbc", "root-plugin-sql-pgsql", "root-plugin-geom-geombuilder", "root-plugin-geom-geompainter", "root-plugin-graf2d-x11", "root-plugin-graf3d-x3d", "root-plugin-gui-fitpanel", "root-plugin-gui-guibuilder", "root-plugin-gui-sessionviewer", "root-plugin-hist-hbook", "root-plugin-hist-histpainter", "root-plugin-hist-spectrumpainter", "root-plugin-io-sql", "root-plugin-io-xml", "root-plugin-math-fumili", "root-plugin-tree-treeviewer", "root-system-proofd", "root-system-rootd", "root-system-bin", "root-system-common", "root-system", "rivet", "rivet-plugins", "rivet-root-converter", "thepeg", "thepeg-gui", "herwig++", "geant4", "neuron", "dials", "sdpb"], "ignore": [], "avoid": []}, "geography": {"depends": [], "suggests": ["googleearth-package", "sumo", "libmseed-dev", "python3-pyepsg"], "recommends": ["gis-workstation", "grass", "qgis", "qgis-plugin-grass", "proj-bin", "mapserver-bin", "gmt", "gpsbabel", "gpx2shp", "gpsd", "gpsman", "earth3d", "openscenegraph", "gpstrans", "geoip-bin", "gpsd-clients", "grass-doc", "python3-mapscript", "phppgadmin", "gpsmanshp", "viking", "avce00", "e00compr", "gdal-bin", "ogdi-bin", "postgis", "osm2pgsql", "josm", "gosmore", "python3-mapnik", "mapnik-utils", "osmpbf-bin", "hyantesite", "r-cran-sp", "r-cran-maptools", "r-cran-mapdata", "r-cran-mapproj", "r-cran-maps", "r-cran-fields", "r-cran-raster", "pgadmin3", "grace", "hydroffice.bag-tools", "python3-cartopy", "sac2mseed", "python3-spaghetti"], "ignore": [], "avoid": []}, "bci": {"depends": [], "suggests": ["pyff", "pybci", "bcpy2000", "bci2000", "emokit", "openvibe"], "recommends": [], "ignore": [], "avoid": []}, "workflow": {"depends": [], "suggests": ["cwlformat", "libbenchmark-tools"], "recommends": ["make", "pegasus-wms", "snakemake", "cwltool", "coop-computing-tools", "python3-nipype", "gearman", "gearman-tools", "toil", "python3-wdlparse", "capsule-nextflow"], "ignore": [], "avoid": []}, "mathematics": {"depends": [], "suggests": ["gap-online-help", "gap-gapdoc", "gap-io", "gap-scscp", "netgen-doc", "r-cran-evd", "sagetex", "matlab-support", "ann-tools", "gmp-ecm", "primesieve", "evolver-ogl | evolver-nox", "libspectra-dev"], "recommends": ["axiom", "ginac-tools", "xmaxima", "wxmaxima", "pari-gp", "gap", "magnus", "gap-small-groups-extra", "gap-trans-groups", "gap-prim-groups", "gap-small-groups", "gap-table-of-marks", "gap-guava", "gap-character-tables", "gap-float", "gap-design", "gap-factint", "gap-laguna", "gap-sonata", "gap-toric", "gap-openmath", "gap-grape", "gerris", "freefem", "freefem3d", "freefem++", "netgen", "gmsh", "getdp", "coq", "proofgeneral", "matita", "agda", "prover9", "hol-light", "minisat", "science-statistics", "geomview", "octave", "xmds", "xmds2", "freemat", "mathomatic", "scilab", "scilab-ann", "regina-normal", "snappea", "lp-solve", "qsopt-ex", "libmatheval1", "mumps-test", "nauty", "geogebra", "lrslib", "fenics", "python3-dolfin", "python3-ffc", "python3-ufl", "polylib-utils", "rheolef", "scotch", "isabelle", "bliss", "python3-openturns", "python3-persalys", "persalys", "python3-deap", "mcl", "sagemath", "maxima-sage", "sagemath-database-conway-polynomials", 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"ignore": [], "avoid": []}}
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