[Cdd-commits] r433 - projects/med/trunk/debian-med/tasks

[CDD Subversion Commit]

Author: charles-guest
Date: Thu Nov  2 15:48:58 2006
New Revision: 433

Modified:
   projects/med/trunk/debian-med/tasks/bio
Log:
Re-organised med-bio. Could not manage to test by building the metapackage.

Modified: projects/med/trunk/debian-med/tasks/bio
==============================================================================
--- projects/med/trunk/debian-med/tasks/bio	(original)
+++ projects/med/trunk/debian-med/tasks/bio	Thu Nov  2 15:48:58 2006
@@ -1,41 +1,34 @@
 Task: Biology
 Description: Debian-Med micro-biology packages
- This meta package will install micro-biology related Debian packages
- for use in medical research.
+ This meta package will install Debian packages related to molecular biology,
+ structural biology and bioinformatics for use in life sciences.
 
-Depends: blast2, fastdnaml, fastlink, garlic, hmmer, \
-         loki, ncbi-epcr, ncbi-tools-bin, ncbi-tools-x11, njplot, pymol, \
-	 r-cran-qtl, rasmol, readseq, tigr-glimmer, tree-puzzle | tree-ppuzzle
 
-Depends:     boxshade
+Depends:     fastdnaml, njplot, tree-puzzle | tree-ppuzzle, treeviewx
+Why:         Phylogenetic analysis.
+Depends:     molphy, phylip, treetool
+Why:         Phylogenetic analysis (Non-free, thus only suggested).
+
+Depends:     fastlink, loki, r-cran-qtl
+Why:         Genetics.
+
+Depends:     amap-align, blast2, boxshade, dialign, gff2aplot, hmmer, kalign, muscle, poa, probcons, \
+             seaview, sim4, t-coffee, wise
+Why:         Sequence alignments and related programs.
+Depends:     arb, clustalw | clustalw-mpi, clustalx
+Why          Sequence alignments and related programs (Non-free, thus only suggested).
 
-Depends:     ghemical
-Why:         Molecular modelling of ligands of receptors
-Responsible: Steffen Möller
-
-Suggests:    bugsx, clustalw | clustalw-mpi, clustalx, molphy, phylip, treetool
-Why:         Non-free, thus only suggested.
-
-Depends:     seaview
+Depends:     adun.app, garlic, gdpc, ghemical, gromacs, pymol, rasmol
+Why:         Molecular modelling and molecular modelling.
 
 Recommends:  textopo
 Why:         This is only recommended to not necessarily flood the system with TeX packages - perhaps target for -doc?
 
-Depends:     muscle, gff2aplot, t-coffee, gff2ps, gdpc
-
-Depends:     mipe, perlprimer
-
-Depends:     sim4
-
-Suggests:    arb
-Why:         non-free can only be suggested
+Depends:     biosquid, gff2ps, mipe, ncbi-epcr, ncbi-tools-bin, ncbi-tools-x11, perlprimer, readseq, tigr-glimmer
+Why:         Tools for the molecular biologist.
 
 Suggests:    mozilla-biofox
-Why:         Because of the dependency from firefox we only suggest this package to not bloat the system of the user
-
-Depends:     gromacs, dialign, kalign, probcons, wise, amap-align, biosquid, poa
-
-Suggests:    wise-doc
-
-Depends:     Adun.app, treeviewx
+Why:         Tools for the molecular biologist. Because of the dependency from firefox we only suggest this package to not bloat the system of the user.
 
+Suggests:    bugsx 
+Why:         Other packages (Non-free, thus only suggested).