[Collab-qa-commits] r2239 - in packages-metadata: c e g m p
Charles Plessy
plessy at alioth.debian.org
Mon Apr 23 03:00:27 UTC 2012
Author: plessy
Date: 2012-04-23 03:00:27 +0000 (Mon, 23 Apr 2012)
New Revision: 2239
Added:
packages-metadata/e/epcr.upstream
packages-metadata/p/plink.upstream
Modified:
packages-metadata/c/cd-hit.copyright
packages-metadata/c/cd-hit.upstream
packages-metadata/e/epcr.copyright
packages-metadata/g/gofigure2.copyright
packages-metadata/m/mustang.upstream
packages-metadata/p/plink.copyright
Log:
Daily automatic umegaya push
Modified: packages-metadata/c/cd-hit.copyright
===================================================================
--- packages-metadata/c/cd-hit.copyright 2012-04-22 12:04:00 UTC (rev 2238)
+++ packages-metadata/c/cd-hit.copyright 2012-04-23 03:00:27 UTC (rev 2239)
@@ -1,4 +1,4 @@
-Format: http://dep.debian.net/deps/dep5/
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: CD-HIT
Upstream-Contact: Weizhong Li <liwz at sdsc.edu>
Source: http://code.google.com/p/cdhit/downloads/list
@@ -28,7 +28,11 @@
Thanks a lot, let me know if anything is needed.
Weizhong
+Files: debian/*
+Copyright: © 2011 Andreas Tille <tille at debian.org>
License: GPL-2
+
+License: GPL-2
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 2 of the License, or
@@ -45,8 +49,3 @@
On Debian systems, the full text of the GNU General Public License version 2
can be found in the file `/usr/share/common-licenses/GPL-2'.
-Files: debian/*
-Copyright: © 2011 Andreas Tille <tille at debian.org>
-License: Same as cd-hit itself (GPL-2)
- On Debian systems, the full text of the GNU General Public License version 2
- can be found in the file `/usr/share/common-licenses/GPL-2'.
Modified: packages-metadata/c/cd-hit.upstream
===================================================================
--- packages-metadata/c/cd-hit.upstream 2012-04-22 12:04:00 UTC (rev 2238)
+++ packages-metadata/c/cd-hit.upstream 2012-04-23 03:00:27 UTC (rev 2239)
@@ -1,13 +1,14 @@
Contact: Weizhong Li <liwz at sdsc.edu>
-Reference-DOI: 10.1093/bioinformatics/btl158
Homepage: http://weizhong-lab.ucsd.edu/cd-hit/
Name: CD-HIT
-Reference-PMID: 16731699
Reference:
- author: Weizhong Li, Adam Godzik
+ author: Weizhong Li and Adam Godzik
title: >
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences.
journal: Bioinformatics
volume: 22
year: 2006
- URL: http://bioinformatics.oxfordjournals.org/content/22/13/1658.full.pdf+html
+ PMID: 16731699
+ DOI: 10.1093/bioinformatics/btl158
+ URL: http://bioinformatics.oxfordjournals.org/content/22/13/1658
+ eprint: http://bioinformatics.oxfordjournals.org/content/22/13/1658.full.pdf+html
Modified: packages-metadata/e/epcr.copyright
===================================================================
--- packages-metadata/e/epcr.copyright 2012-04-22 12:04:00 UTC (rev 2238)
+++ packages-metadata/e/epcr.copyright 2012-04-23 03:00:27 UTC (rev 2239)
@@ -1,4 +1,4 @@
-Format: http://dep.debian.net/deps/dep5/
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Source: ftp://ftp.ncbi.nlm.nih.gov/pub/schuler/e-PCR/e-PCR-2.3.12-src.tar.gz
Files: *
@@ -26,25 +26,11 @@
Files: debian/*
Copyright: © 2003-2004 Steffen Moeller <moeller at debian.org>
- © 2008-2009 Andreas Tille <tille at debian.org>
+ © 2008-2012 Andreas Tille <tille at debian.org>
© 2008-2009 Charles Plessy <plessy at debian.org>
-License: unknown
- There was not statement of copyright for the whole package when I
- reformatted ‘debian/copyright’. Please treat my contributions as if
- they were in the public domain. -- Charles Plessy
-
-Files: debian/*.1
-Copyright: © 2003-2004 Steffen Moeller <moeller at debian.org>
- © 2008 Andreas Tille <tille at debian.org>
License: GPL-2+
-Files: debian/rules
-Copyright: © 2008 Andreas Tille <tille at debian.org>
License: GPL-2+
-Comment: Listed as GPL-2+ because no version was indicated and I am
- sure that is what Andreas meant.
-
-License: GPL-2+
This program is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
Added: packages-metadata/e/epcr.upstream
===================================================================
--- packages-metadata/e/epcr.upstream (rev 0)
+++ packages-metadata/e/epcr.upstream 2012-04-23 03:00:27 UTC (rev 2239)
@@ -0,0 +1,11 @@
+Reference:
+ author: Schuler, Gregory D.
+ title; Sequence Mapping by Electronic PCR
+ journal: Genome Research
+ volume: 7
+ number: 5
+ pages: 541-550
+ doi: 10.1101/gr.7.5.541
+ year: 1997
+ URL: http://genome.cshlp.org/content/7/5/541.abstract
+ eprint: http://genome.cshlp.org/content/7/5/541.full.pdf+html
Modified: packages-metadata/g/gofigure2.copyright
===================================================================
--- packages-metadata/g/gofigure2.copyright 2012-04-22 12:04:00 UTC (rev 2238)
+++ packages-metadata/g/gofigure2.copyright 2012-04-23 03:00:27 UTC (rev 2239)
@@ -1,6 +1,5 @@
-Format-Specification: http://dep.debian.net/deps/dep5/
-Name: gofigure2
-Maintainer: Mathieu Malaterre
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: gofigure2
Source: http://gofigure2.sourceforge.net/
Files: *
@@ -220,7 +219,7 @@
License: Apache 2.0
Files: debian/*
-Copyright: 2011; Mathieu Malaterre <mathieu.malaterre at gmail.com>
+Copyright: 2011-2012; Mathieu Malaterre <malat at debian.org>
License: Apache 2.0
License: Apache 2.0
Modified: packages-metadata/m/mustang.upstream
===================================================================
--- packages-metadata/m/mustang.upstream 2012-04-22 12:04:00 UTC (rev 2238)
+++ packages-metadata/m/mustang.upstream 2012-04-23 03:00:27 UTC (rev 2239)
@@ -2,7 +2,7 @@
Homepage: http://www.cs.mu.oz.au/~arun/mustang/
Name: MUSTANG
Reference:
- Author: Arun S. Konagurthu, James C. Whisstock, Peter J. Stuckey and Arthur M. Lesk
+ Author: Arun S. Konagurthu and James C. Whisstock and Peter J. Stuckey and Arthur M. Lesk
Title: >
MUSTANG: A multiple structural alignment algorithm
Journal: >
Modified: packages-metadata/p/plink.copyright
===================================================================
--- packages-metadata/p/plink.copyright 2012-04-22 12:04:00 UTC (rev 2238)
+++ packages-metadata/p/plink.copyright 2012-04-23 03:00:27 UTC (rev 2239)
@@ -1,43 +1,53 @@
-This package was debianized by Steffen Moeller <moeller at debian.org> on
-Mon, 14 Jul 2008 17:30:41 +0200
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: PLINK
+Upstream-Contact: Shaun Purcell <plink at chgr.mgh.harvard.edu>
+Source: http://pngu.mgh.harvard.edu/~purcell/plink/dist/
-It was downloaded from http://pngu.mgh.harvard.edu/~purcell/plink/dist/plink-1.06-src.zip
+Files: *
+Copyright: 2005-2009 Shaun Purcell <plink at chgr.mgh.harvard.edu>
+License: GPL-2
-Upstream Author:
+Files: Rconnection.*
+Copyright: 2004 Simon Urbanek
+License: LGPL-2.1
- Shaun Purcell <plink at chgr.mgh.harvard.edu>
+Files: debian/*
+Copyright: 2008 Steffen Moeller <moeller at debian.org>
+ 2009-2012 Andreas Tille <tille at debian.org>
+License: GPL-2
-Copyright:
+License: GPL-2
+ This package is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License in version
+ 2 of the license as published by the Free Software Foundation.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this package; if not, write to the Free Software
+ Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+ .
+ On Debian systems, the complete text of the GNU General
+ Public License can be found in `/usr/share/common-licenses/GPL-2'.
- Rconnection.cpp:
-
- Copyright (C) 2004 Simon Urbanek, All rights reserved.
+License: LGPL-2.1
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of the GNU Lesser General Public License as published by
+ the Free Software Foundation; version 2.1 of the License
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU Leser General Public License for more details.
+ .
+ You should have received a copy of the GNU Lesser General Public License
+ along with this program; if not, write to the Free Software
+ Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+ .
+ Although this code is licensed under LGPL v2.1, we strongly encourage
+ everyone modifying this software to contribute back any improvements and
+ bugfixes to the project for the benefit all other users. Thank you.
- All other code (dcdflib.cpp has no explicit copyright information):
-
- Copyright (C) 2005-2008 Shaun Purcell <plink at chgr.mgh.harvard.edu>
-
-
-License:
-
- This package is free software; you can redistribute it and/or modify
- it under the terms of the GNU General Public License in version
- 2 of the license as published by the Free Software Foundation.
-
- This package is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
-
- You should have received a copy of the GNU General Public License
- along with this package; if not, write to the Free Software
- Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-
-A neglectable minority of the source files also allow the redistribution
-under a later license of the GPL.
-
-On Debian systems, the complete text of the GNU General
-Public License can be found in `/usr/share/common-licenses/GPL-2'.
-
-The Debian packaging is (C) 2008, Steffen Moeller <moeller at debian.org> and
-is licensed under the GPL, see `/usr/share/common-licenses/GPL-2'.
Added: packages-metadata/p/plink.upstream
===================================================================
--- packages-metadata/p/plink.upstream (rev 0)
+++ packages-metadata/p/plink.upstream 2012-04-23 03:00:27 UTC (rev 2239)
@@ -0,0 +1,10 @@
+Reference:
+ Author: Shaun Purcell and Benjamin Neale and Kathe Todd-Brown and Lori Thomas and Manuel A. R. Ferreira and David Bender and Julian Maller and Pamela Sklar and Paul I. W. de Bakker and Mark J. Daly and Pak C. Sham
+ Title: "PLINK: a toolset for whole-genome association and population-based linkage analysis"
+ Journal: American Journal of Human Genetics
+ Volume: 81
+ Number: 3
+ Pages: 559-75
+ Year: 2007
+ PMID: 17701901
+ URL: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1950838/
More information about the Collab-qa-commits
mailing list