[Collab-qa-commits] r2654 - in packages-metadata: i j

[Charles Plessy]

Author: plessy
Date: 2013-04-08 02:58:55 +0000 (Mon, 08 Apr 2013)
New Revision: 2654

Modified:
   packages-metadata/i/igv.control
   packages-metadata/i/igv.copyright
   packages-metadata/j/josm-plugins.control
Log:
Daily automatic umegaya push

Modified: packages-metadata/i/igv.control
===================================================================
--- packages-metadata/i/igv.control	2013-04-07 02:58:56 UTC (rev 2653)
+++ packages-metadata/i/igv.control	2013-04-08 02:58:55 UTC (rev 2654)
@@ -31,8 +31,8 @@
  libjcommon-java, libjfreechart-java, libjhdf5-java, libjlibeps-java,
  libjama-java, libjargs-java, libjaxp1.3-java, liblog4j1.2-java,
  libsam-java, libswing-layout-java, libxml-commons-external-java,
- libguava-java,libnb-absolutelayout-java, libbcprove-java (>= 1.47),
- lbjgrapht0.8-java
+ libguava-java,libnb-absolutelayout-java, libbcprov-java (>= 1.47),
+ libjgrapht0.8-java
 Description: Integrative Genomics Viewer
  The Integrative Genomics Viewer (IGV) is a high-performance viewer that
  efficiently handles large heterogeneous data sets, while providing a

Modified: packages-metadata/i/igv.copyright
===================================================================
--- packages-metadata/i/igv.copyright	2013-04-07 02:58:56 UTC (rev 2653)
+++ packages-metadata/i/igv.copyright	2013-04-08 02:58:55 UTC (rev 2654)
@@ -34,6 +34,12 @@
 License: LGPL-2.1
  See `/usr/share/common-licenses/LGPL-2.1'.
 
+Files: lib/goby-io-igv.jar
+Copyright: 2012 Campagne Laboratory, Weill Cornell Medical College
+License: LGPL-3
+ See `/usr/share/common-licenses/LGPL-3'.
+
+
 Files: src/org/j3d/io/EndianConverter.java
 Copyright: 2001, 2002 Dipl. Ing. P. Szawlowski
 License: LGPL-2.1
@@ -82,325 +88,6 @@
  this Disclaimer to be otherwise enforceable in
  such jurisdiction.
 
-Files: lib/AbsoluteLayout.jar
-Copyright: 1997 - 2009 Sun Microsystems, Inc.
-License: CDDL or GPL-2 with classpath exception
- See `/usr/share/common-licenses/GPL-2'.
- .
- "CLASSPATH" EXCEPTION TO THE GPL VERSION 2
- .
- Certain source files distributed by Sun Microsystems, Inc. are
- subject to the following clarification and special exception to the
- GPL Version 2, but only where Sun has expressly included in the
- particular source file's header the words:
- .
- "Sun designates this particular file as subject to the "Classpath"
- exception as provided by Sun in the License file that accompanied
- this code."
- .
- Linking this library statically or dynamically with other modules is
- making a combined work based on this library. Thus, the terms and
- conditions of the GNU General Public License Version 2 cover the
- whole combination.
- .
- As a special exception, the copyright holders of this library give
- you permission to link this library with independent modules to
- produce an executable, regardless of the license terms of these
- independent modules, and to copy and distribute the resulting
- executable under terms of your choice, provided that you also meet,
- for each linked independent module, the terms and conditions of the
- license of that module. An independent module is a module which is
- not derived from or based on this library. If you modify this
- library, you may extend this exception to your version of the
- library, but you are not obligated to do so. If you do not wish to do
- so, delete this exception statement from your version.
- .
- COMMON DEVELOPMENT AND DISTRIBUTION LICENSE (CDDL) Version 1.0
- .
- 1. Definitions.
- 1.1. “Contributor” means each individual or entity that creates or
- contributes to the creation of Modifications.
- 1.2. “Contributor Version” means the combination of the Original
- Software, prior Modifications used by a Contributor (if any), and the
- Modifications made by that particular Contributor.
- 1.3. “Covered Software” means (a) the Original Software, or (b)
- Modifications, or (c) the combination of files containing Original
- Software with files containing Modifications, in each case including
- portions thereof.
- 1.4. “Executable” means the Covered Software in any form other than
- Source Code.
- 1.5. “Initial Developer” means the individual or entity that first
- makes Original Software available under this License.
- 1.6. “Larger Work” means a work which combines Covered Software or
- portions thereof with code not governed by the terms of this License.
- 1.7. “License” means this document.
- 1.8. “Licensable” means having the right to grant, to the maximum
- extent possible, whether at the time of the initial grant or
- subsequently acquired, any and all of the rights conveyed herein.
- 1.9 “Modifications” means the Source Code and Executable form of any
- of the following:
- A. Any file that results from an addition to, deletion from or
- modification of the contents of a file containing Original Software
- or previous Modifications;
- B. Any new file that contains any part of the Original Software or
- previous Modification; or
- C. Any new file that is contributed or otherwise made available under
- the terms of this License.
- 1.10. “Original Software” means the Source Code and Executable form
- of computer software code that is originally released under this
- License.
- 1.11. “Patent Claims” means any patent claim(s), now owned or
- hereafter acquired, including without limitation, method, process,
- and apparatus claims, in any patent Licensable by grantor.
- 1.12. “Source Code” means (a) the common form of computer software
- code in which modifications are made and (b) associated documentation
- included in or with such code.
- 1.13. “You” (or “Your”) means an individual or a legal entity
- exercising rights under, and complying with all of the terms of, this
- License. For legal entities, “You” includes any entity which
- controls, is controlled by, or is under common control with You. For
- purposes of this definition, “control” means (a) the power, direct or
- indirect, to cause the direction or management of such entity,
- whether by contract or otherwise, or (b) ownership of more than fifty
- percent (50%) of the outstanding shares or beneficial ownership of
- such entity.
- 2. License Grants.
- 2.1. The Initial Developer Grant.
- Conditioned upon Your compliance with Section 3.1 below and subject
- to third party intellectual property claims, the Initial Developer
- hereby grants You a world-wide, royalty-free, non-exclusive license:
- (a) under intellectual property rights (other than patent or
- trademark) Licensable by Initial Developer, to use, reproduce,
- modify, display, perform, sublicense and distribute the Original
- Software (or portions thereof), with or without Modifications, and/or
- as part of a Larger Work; and
- (b) under Patent Claims infringed by the making, using or selling of
- Original Software, to make, have made, use, practice, sell, and offer
- for sale, and/or otherwise dispose of the Original Software (or
- portions thereof).
- (c) The licenses granted in Sections 2.1(a) and (b) are effective on
- the date Initial Developer first distributes or otherwise makes the
- Original Software available to a third party under the terms of this
- License.
- (d) Notwithstanding Section 2.1(b) above, no patent license is
- granted: (1) for code that You delete from the Original Software, or
- (2) for infringements caused by: (i) the modification of the Original
- Software, or (ii) the combination of the Original Software with other
- software or devices.
- 2.2. Contributor Grant.
- Conditioned upon Your compliance with Section 3.1 below and subject
- to third party intellectual property claims, each Contributor hereby
- grants You a world-wide, royalty-free, non-exclusive license:
- (a) under intellectual property rights (other than patent or
- trademark) Licensable by Contributor to use, reproduce, modify,
- display, perform, sublicense and distribute the Modifications created
- by such Contributor (or portions thereof), either on an unmodified
- basis, with other Modifications, as Covered Software and/or as part
- of a Larger Work; and
- (b) under Patent Claims infringed by the making, using, or selling of
- Modifications made by that Contributor either alone and/or in
- combination with its Contributor Version (or portions of such
- combination), to make, use, sell, offer for sale, have made, and/or
- otherwise dispose of: (1) Modifications made by that Contributor (or
- portions thereof); and (2) the combination of Modifications made by
- that Contributor with its Contributor Version (or portions of such
- combination).
- (c) The licenses granted in Sections 2.2(a) and 2.2(b) are effective
- on the date Contributor first distributes or otherwise makes the
- Modifications available to a third party.
- (d) Notwithstanding Section 2.2(b) above, no patent license is
- granted: (1) for any code that Contributor has deleted from the
- Contributor Version; (2) for infringements caused by: (i) third party
- modifications of Contributor Version, or (ii) the combination of
- Modifications made by that Contributor with other software (except as
- part of the Contributor Version) or other devices; or (3) under
- Patent Claims infringed by Covered Software in the absence of
- Modifications made by that Contributor.
- 3. Distribution Obligations.
- 3.1. Availability of Source Code.
- Any Covered Software that You distribute or otherwise make available
- in Executable form must also be made available in Source Code form
- and that Source Code form must be distributed only under the terms of
- this License. You must include a copy of this License with every copy
- of the Source Code form of the Covered Software You distribute or
- otherwise make available. You must inform recipients of any such
- Covered Software in Executable form as to how they can obtain such
- Covered Software in Source Code form in a reasonable manner on or
- through a medium customarily used for software exchange.
- 3.2. Modifications.
- The Modifications that You create or to which You contribute are
- governed by the terms of this License. You represent that You believe
- Your Modifications are Your original creation(s) and/or You have
- sufficient rights to grant the rights conveyed by this License.
- 3.3. Required Notices.
- You must include a notice in each of Your Modifications that
- identifies You as the Contributor of the Modification. You may not
- remove or alter any copyright, patent or trademark notices contained
- within the Covered Software, or any notices of licensing or any
- descriptive text giving attribution to any Contributor or the Initial
- Developer.
- 3.4. Application of Additional Terms.
- You may not offer or impose any terms on any Covered Software in
- Source Code form that alters or restricts the applicable version of
- this License or the recipients’ rights hereunder. You may choose to
- offer, and to charge a fee for, warranty, support, indemnity or
- liability obligations to one or more recipients of Covered Software.
- However, you may do so only on Your own behalf, and not on behalf of
- the Initial Developer or any Contributor. You must make it absolutely
- clear that any such warranty, support, indemnity or liability
- obligation is offered by You alone, and You hereby agree to indemnify
- the Initial Developer and every Contributor for any liability
- incurred by the Initial Developer or such Contributor as a result of
- warranty, support, indemnity or liability terms You offer.
- 3.5. Distribution of Executable Versions.
- You may distribute the Executable form of the Covered Software under
- the terms of this License or under the terms of a license of Your
- choice, which may contain terms different from this License, provided
- that You are in compliance with the terms of this License and that
- the license for the Executable form does not attempt to limit or
- alter the recipient’s rights in the Source Code form from the rights
- set forth in this License. If You distribute the Covered Software in
- Executable form under a different license, You must make it
- absolutely clear that any terms which differ from this License are
- offered by You alone, not by the Initial Developer or Contributor.
- You hereby agree to indemnify the Initial Developer and every
- Contributor for any liability incurred by the Initial Developer or
- such Contributor as a result of any such terms You offer.
- 3.6. Larger Works.
- You may create a Larger Work by combining Covered Software with other
- code not governed by the terms of this License and distribute the
- Larger Work as a single product. In such a case, You must make sure
- the requirements of this License are fulfilled for the Covered
- Software.
- 4. Versions of the License.
- 4.1. New Versions.
- Sun Microsystems, Inc. is the initial license steward and may publish
- revised and/or new versions of this License from time to time. Each
- version will be given a distinguishing version number. Except as
- provided in Section 4.3, no one other than the license steward has
- the right to modify this License.
- 4.2. Effect of New Versions.
- You may always continue to use, distribute or otherwise make the
- Covered Software available under the terms of the version of the
- License under which You originally received the Covered Software. If
- the Initial Developer includes a notice in the Original Software
- prohibiting it from being distributed or otherwise made available
- under any subsequent version of the License, You must distribute and
- make the Covered Software available under the terms of the version of
- the License under which You originally received the Covered Software.
- Otherwise, You may also choose to use, distribute or otherwise make
- the Covered Software available under the terms of any subsequent
- version of the License published by the license steward.
- 4.3. Modified Versions.
- When You are an Initial Developer and You want to create a new
- license for Your Original Software, You may create and use a modified
- version of this License if You: (a) rename the license and remove any
- references to the name of the license steward (except to note that
- the license differs from this License); and (b) otherwise make it
- clear that the license contains terms which differ from this License.
- 5. DISCLAIMER OF WARRANTY.
- COVERED SOFTWARE IS PROVIDED UNDER THIS LICENSE ON AN “AS IS” BASIS,
- WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING,
- WITHOUT LIMITATION, WARRANTIES THAT THE COVERED SOFTWARE IS FREE OF
- DEFECTS, MERCHANTABLE, FIT FOR A PARTICULAR PURPOSE OR
- NON-INFRINGING. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF
- THE COVERED SOFTWARE IS WITH YOU. SHOULD ANY COVERED SOFTWARE PROVE
- DEFECTIVE IN ANY RESPECT, YOU (NOT THE INITIAL DEVELOPER OR ANY OTHER
- CONTRIBUTOR) ASSUME THE COST OF ANY NECESSARY SERVICING, REPAIR OR
- CORRECTION. THIS DISCLAIMER OF WARRANTY CONSTITUTES AN ESSENTIAL PART
- OF THIS LICENSE. NO USE OF ANY COVERED SOFTWARE IS AUTHORIZED
- HEREUNDER EXCEPT UNDER THIS DISCLAIMER.
- 6. TERMINATION.
- 6.1. This License and the rights granted hereunder will terminate
- automatically if You fail to comply with terms herein and fail to
- cure such breach within 30 days of becoming aware of the breach.
- Provisions which, by their nature, must remain in effect beyond the
- termination of this License shall survive.
- 6.2. If You assert a patent infringement claim (excluding declaratory
- judgment actions) against Initial Developer or a Contributor (the
- Initial Developer or Contributor against whom You assert such claim
- is referred to as “Participant”) alleging that the Participant
- Software (meaning the Contributor Version where the Participant is a
- Contributor or the Original Software where the Participant is the
- Initial Developer) directly or indirectly infringes any patent, then
- any and all rights granted directly or indirectly to You by such
- Participant, the Initial Developer (if the Initial Developer is not
- the Participant) and all Contributors under Sections 2.1 and/or 2.2
- of this License shall, upon 60 days notice from Participant terminate
- prospectively and automatically at the expiration of such 60 day
- notice period, unless if within such 60 day period You withdraw Your
- claim with respect to the Participant Software against such
- Participant either unilaterally or pursuant to a written agreement
- with Participant.
- 6.3. In the event of termination under Sections 6.1 or 6.2 above, all
- end user licenses that have been validly granted by You or any
- distributor hereunder prior to termination (excluding licenses
- granted to You by any distributor) shall survive termination.
- 7. LIMITATION OF LIABILITY.
- UNDER NO CIRCUMSTANCES AND UNDER NO LEGAL THEORY, WHETHER TORT
- (INCLUDING NEGLIGENCE), CONTRACT, OR OTHERWISE, SHALL YOU, THE
- INITIAL DEVELOPER, ANY OTHER CONTRIBUTOR, OR ANY DISTRIBUTOR OF
- COVERED SOFTWARE, OR ANY SUPPLIER OF ANY OF SUCH PARTIES, BE LIABLE
- TO ANY PERSON FOR ANY INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL
- DAMAGES OF ANY CHARACTER INCLUDING, WITHOUT LIMITATION, DAMAGES FOR
- LOST PROFITS, LOSS OF GOODWILL, WORK STOPPAGE, COMPUTER FAILURE OR
- MALFUNCTION, OR ANY AND ALL OTHER COMMERCIAL DAMAGES OR LOSSES, EVEN
- IF SUCH PARTY SHALL HAVE BEEN INFORMED OF THE POSSIBILITY OF SUCH
- DAMAGES. THIS LIMITATION OF LIABILITY SHALL NOT APPLY TO LIABILITY
- FOR DEATH OR PERSONAL INJURY RESULTING FROM SUCH PARTY’S NEGLIGENCE
- TO THE EXTENT APPLICABLE LAW PROHIBITS SUCH LIMITATION. SOME
- JURISDICTIONS DO NOT ALLOW THE EXCLUSION OR LIMITATION OF INCIDENTAL
- OR CONSEQUENTIAL DAMAGES, SO THIS EXCLUSION AND LIMITATION MAY NOT
- APPLY TO YOU.
- 8. U.S. GOVERNMENT END USERS.
- The Covered Software is a “commercial item,” as that term is defined
- in 48 C.F.R. 2.101 (Oct. 1995), consisting of “commercial computer
- software” (as that term is defined at 48 C.F.R. §252.227-7014(a)(1))
- and “commercial computer software documentation” as such terms are
- used in 48 C.F.R. 12.212 (Sept. 1995). Consistent with 48 C.F.R.
- 12.212 and 48 C.F.R. 227.7202-1 through 227.7202-4 (June 1995), all
- U.S. Government End Users acquire Covered Software with only those
- rights set forth herein. This U.S. Government Rights clause is in
- lieu of, and supersedes, any other FAR, DFAR, or other clause or
- provision that addresses Government rights in computer software under
- this License.
- 9. MISCELLANEOUS.
- This License represents the complete agreement concerning subject
- matter hereof. If any provision of this License is held to be
- unenforceable, such provision shall be reformed only to the extent
- necessary to make it enforceable. This License shall be governed by
- the law of the jurisdiction specified in a notice contained within
- the Original Software (except to the extent applicable law, if any,
- provides otherwise), excluding such jurisdiction’s conflict-of-law
- provisions. Any litigation relating to this License shall be subject
- to the jurisdiction of the courts located in the jurisdiction and
- venue specified in a notice contained within the Original Software,
- with the losing party responsible for costs, including, without
- limitation, court costs and reasonable attorneys’ fees and expenses.
- The application of the United Nations Convention on Contracts for the
- International Sale of Goods is expressly excluded. Any law or
- regulation which provides that the language of a contract shall be
- construed against the drafter shall not apply to this License. You
- agree that You alone are responsible for compliance with the United
- States export administration regulations (and the export control laws
- and regulation of any other countries) when You use, distribute or
- otherwise make available any Covered Software.
- 10. RESPONSIBILITY FOR CLAIMS.
- As between Initial Developer and the Contributors, each party is
- responsible for claims and damages arising, directly or indirectly,
- out of its utilization of rights under this License and You agree to
- work with Initial Developer and Contributors to distribute such
- responsibility on an equitable basis. Nothing herein is intended or
- shall be deemed to constitute any admission of liability.
- NOTICE PURSUANT TO SECTION 9 OF THE COMMON DEVELOPMENT AND
- DISTRIBUTION LICENSE (CDDL)
- The code released under the CDDL shall be governed by the laws of the
- State of California (excluding conflict-of-law provisions). Any
- litigation relating to this License shall be subject to the
- jurisdiction of the Federal Courts of the Northern District of
- California and the state courts of the State of California, with
- venue lying in Santa Clara County, California.
-
 Files: lib/jide*
 Copyright: 2002-2010 JIDE Software, Inc
 License: other

Modified: packages-metadata/j/josm-plugins.control
===================================================================
--- packages-metadata/j/josm-plugins.control	2013-04-07 02:58:56 UTC (rev 2653)
+++ packages-metadata/j/josm-plugins.control	2013-04-08 02:58:55 UTC (rev 2654)
@@ -10,13 +10,13 @@
  , ant-contrib
  , debhelper (>= 8~)
  , default-jdk
- , josm (>= 0.0.svn5608)
+ , josm (>= 0.0.svn5759)
  , libmetadata-extractor-java
  , liblog4j1.2-java
  , libjgrapht0.8-java
  , libgettext-ant-tasks-java
  , python
-Build-Conflicts: josm (>= 0.0.svn5609)
+Build-Conflicts: josm (>= 0.0.svn5760)
 Standards-Version: 3.9.4
 Homepage: http://josm.openstreetmap.de/wiki/Plugins
 Vcs-Git: git://anonscm.debian.org/pkg-osm/josm-plugins.git
@@ -26,11 +26,11 @@
 Architecture: all
 Depends:
  ${misc:Depends}
- , josm (>= 0.0.svn5608)
+ , josm (>= 0.0.svn5759)
  , libmetadata-extractor-java
  , liblog4j1.2-java
  , libjgrapht0.8-java
-Breaks: josm (>= 0.0.svn5609)
+Breaks: josm (>= 0.0.svn5760)
 Suggests: gpsd
 Description: Plugins for JOSM
  JOSM (Java OpenStreetMap) plugin collection.