[Collab-qa-commits] r2660 - in packages-metadata: a c f g i l m o p q t u v y z
Charles Plessy
plessy at alioth.debian.org
Sat Apr 27 04:09:27 UTC 2013
Author: plessy
Date: 2013-04-27 04:09:26 +0000 (Sat, 27 Apr 2013)
New Revision: 2660
Added:
packages-metadata/a/activiz.net.control
packages-metadata/a/activiz.net.copyright
packages-metadata/c/cnrun.control
packages-metadata/c/cnrun.copyright
packages-metadata/c/cnrun.upstream
packages-metadata/f/fftw3.control
packages-metadata/f/fftw3.copyright
packages-metadata/g/gnuplot.control
packages-metadata/g/gnuplot.copyright
packages-metadata/g/gperiodic.control
packages-metadata/g/gperiodic.copyright
packages-metadata/i/invesalius.control
packages-metadata/l/latexdiff.control
packages-metadata/l/latexdiff.copyright
packages-metadata/l/libchipcard.control
packages-metadata/l/libchipcard.copyright
packages-metadata/m/matlab2tikz.control
packages-metadata/m/matlab2tikz.copyright
packages-metadata/m/mia.control
packages-metadata/m/mia.copyright
packages-metadata/o/orthanc.upstream
packages-metadata/p/proj.control
packages-metadata/p/proj.copyright
packages-metadata/p/python-clips.control
packages-metadata/p/python-clips.copyright
packages-metadata/p/python-mzml.control
packages-metadata/p/python-mzml.copyright
packages-metadata/p/python-mzml.upstream
packages-metadata/q/qrisk2.control
packages-metadata/q/qrisk2.copyright
packages-metadata/q/qrisk2.upstream
packages-metadata/t/tandem-mass.control
packages-metadata/t/tandem-mass.copyright
packages-metadata/u/umegaya.control
packages-metadata/u/umegaya.copyright
packages-metadata/u/umegaya.upstream
packages-metadata/v/visionegg.control
packages-metadata/v/visionegg.copyright
packages-metadata/v/visionegg.upstream
packages-metadata/y/yorick.control
packages-metadata/y/yorick.copyright
packages-metadata/z/zalign.control
packages-metadata/z/zalign.copyright
packages-metadata/z/zalign.upstream
Log:
Daily automatic umegaya push
Added: packages-metadata/a/activiz.net.control
===================================================================
--- packages-metadata/a/activiz.net.control (rev 0)
+++ packages-metadata/a/activiz.net.control 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,55 @@
+Source: activiz.net
+Section: graphics
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Mathieu Malaterre <malat at debian.org>,
+ Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 9), cmake (>= 2.8.3), mummy,
+ libkitware-mummy-runtime1.0-cil, gccxml, libvtk5-dev (>= 5.6), mono-devel,
+ cli-common-dev (>= 0.8~)
+Build-Depends-Indep: doxygen-latex (>= 1.6.2), graphviz
+Standards-Version: 3.9.4
+Homepage: http://www.kitware.com/products/avdownload.php
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/activiz.net/trunk
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/activiz.net/trunk/
+
+Package: libactiviz.net-cil
+Provides: libactiviz.net${vtk:Version}-cil
+Architecture: any
+Section: cli-mono
+Depends: ${shlibs:Depends}, ${misc:Depends}, ${cli:Depends}
+Description: Tool for generating C# wrappers around VTK
+ ActiViz provides a powerful interface to the Visualization Toolkit (VTK), an
+ object-oriented software system encompassing thousands of algorithms that
+ transform data into interactive 3D environments. ActiViz, which generates C#
+ wrappers around VTK, enables developers to combine the power of VTK with the
+ many .NET framework objects for web and database access. Available as source
+ code or as a pre-built WinForms Control, ActiViz .NET includes examples, online
+ documentation, and supports IntelliSense in the .NET Framework
+
+Package: activiz.net-doc
+Architecture: all
+Depends: ${misc:Depends}, doc-base
+Suggests: vtk-doc
+Section: doc
+Description: ActiViz.NET documentation
+ ActiViz provides a powerful interface to the Visualization Toolkit (VTK), an
+ object-oriented software system encompassing thousands of algorithms that
+ transform data into interactive 3D environments.
+ .
+ This package contains exhaustive HTML documentation for the all the
+ documented ActiViz.NET C# classes.
+
+Package: activiz.net-examples
+Architecture: all
+Suggests: vtk-examples
+Depends: ${misc:Depends}
+Description: ActiViz.NET examples
+ ActiViz provides a powerful interface to the Visualization Toolkit (VTK), an
+ object-oriented software system encompassing thousands of algorithms that
+ transform data into interactive 3D environments.
+ The Visualization Toolkit (VTK) is an object oriented, high level
+ library that allows one to easily write C++ programs, Tcl, Python and
+ Java scripts that do 3D visualization.
+ .
+ This package contains examples from the ActiViz.NET source.
Added: packages-metadata/a/activiz.net.copyright
===================================================================
--- packages-metadata/a/activiz.net.copyright (rev 0)
+++ packages-metadata/a/activiz.net.copyright 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,37 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: ActiViz.NET
+Source: http://www.kitware.com/products/avdownload.php
+
+Files: *
+Copyright: 2006-2011 Kitware Inc.
+License: BSD
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions are met:
+ .
+ Redistributions of source code must retain the above copyright notice,
+ this list of conditions and the following disclaimer.
+ .
+ Redistributions in binary form must reproduce the above copyright notice,
+ this list of conditions and the following disclaimer in the documentation
+ and/or other materials provided with the distribution.
+ .
+ Neither name of Kitware, Inc. nor the names of any contributors may be
+ used to endorse or promote products derived from this software without
+ specific prior written permission.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+ AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHORS OR CONTRIBUTORS BE LIABLE FOR
+ ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+ DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+ SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+ CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+ OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+ OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+
+Files: debian/*
+Copyright: 2011-2012 Mathieu Malaterre <malat at debian.org>
+License: BSD
+ Same as the package itself
Added: packages-metadata/c/cnrun.control
===================================================================
--- packages-metadata/c/cnrun.control (rev 0)
+++ packages-metadata/c/cnrun.control 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,23 @@
+Source: cnrun
+Section: science
+Priority: optional
+Maintainer: Andrei Zavada <johnhommer at gmail.com>
+Build-Depends: debhelper (>= 9), hardening-wrapper, hardening-includes, dh-autoreconf, autoconf-archive, libgomp1, libreadline6-dev, libboost-regex-dev (>= 1.41), pkg-config, libgsl0-dev, libxml2-dev
+Standards-Version: 3.9.3
+Homepage: http://johnhommer.com/academic/code/cnrun
+Vcs-Git: git://git.debian.org/git/pkg-exppsy/cnrun.git
+Vcs-Browser: http://anonscm.debian.org/gitweb/?p=pkg-exppsy/cnrun.git;a=summary
+
+Package: cnrun
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Suggests: gnuplot
+Description: NeuroML-capable neuronal network simulator
+ CNrun is a neuronal network model simulator, similar in purpose to
+ NEURON except that individual neurons are not compartmentalised. It
+ can read NeuroML files (e.g., as generated by neuroConstruct);
+ provides a Hodgkin-Huxley neuron (plus some varieties), a Rall and
+ Alpha-Beta synapses, Poisson, Van der Pol, Colpitts oscillators and
+ regular pulse generator; external inputs and logging state variables.
+ Uses a 6-5 Runge-Kutta integration method. Basic scripting and (if
+ run interactively) context-aware autocompletion.
Added: packages-metadata/c/cnrun.copyright
===================================================================
--- packages-metadata/c/cnrun.copyright (rev 0)
+++ packages-metadata/c/cnrun.copyright 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,35 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: cnrun
+Upstream-Contact: Andrei Zavada <johnhommer at gmail.com>
+Source: http://johnhommer.com/academic/code/cnrun/source/
+
+Files: *
+Copyright: 2008-2012 Andrei Zavada <johnhommer at gmail.com>
+License: GPL-2+
+
+Files: src/libcn/*.cc
+Copyright: 2008 Thomas Nowotny <t.nowotny at sussex.ac.uk>
+ 2008-2012 Andrei Zavada <johnhommer at gmail.com>
+License: GPL-2+
+
+License: GPL-2+
+ This program is free software; you can redistribute it
+ and/or modify it under the terms of the GNU General Public
+ License as published by the Free Software Foundation; either
+ version 2 of the License, or (at your option) any later
+ version.
+ .
+ This program is distributed in the hope that it will be
+ useful, but WITHOUT ANY WARRANTY; without even the implied
+ warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ PURPOSE. See the GNU General Public License for more
+ details.
+ .
+ You should have received a copy of the GNU General Public
+ License along with this package; if not, write to the Free
+ Software Foundation, Inc., 51 Franklin St, Fifth Floor,
+ Boston, MA 02110-1301 USA
+ .
+ On Debian systems, the full text of the GNU General Public
+ License version 2 can be found in the file
+ `/usr/share/common-licenses/GPL-2'.
Added: packages-metadata/c/cnrun.upstream
===================================================================
--- packages-metadata/c/cnrun.upstream (rev 0)
+++ packages-metadata/c/cnrun.upstream 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,12 @@
+Reference:
+ Author: Zavada, A. and Buckley, C.L. and Martinez, D. and Rospars, J-P. and Nowotny, T.
+ Title: Competition-based model of pheromone component ratio detection in the moth
+ Journal: PLoS ONE
+ Year: 2011
+ Volume: 6
+ Number: 2
+ Pages: e16308
+ DOI: 10.1371/journal.pone.0016308
+ PMID: 21373177
+ URL: http://johnhommer.com/academic/code/cnrun
+ eprint: http://www.plosone.org/article/fetchObjectAttachment.action?uri=info%3Adoi%2F10.1371%2Fjournal.pone.0016308&representation=PDF
Added: packages-metadata/f/fftw3.control
===================================================================
--- packages-metadata/f/fftw3.control (rev 0)
+++ packages-metadata/f/fftw3.control 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,188 @@
+Source: fftw3
+Section: libs
+Priority: optional
+Maintainer: Debian Science Team <debian-science-maintainers at lists.alioth.debian.org>
+Uploaders: Paul Brossier <piem at debian.org>,
+ Julian Taylor <jtaylor.debian at googlemail.com>
+Build-Depends: chrpath,
+ debhelper (>=7.0.0),
+ dh-autoreconf,
+ dpkg (>= 1.16.0),
+ gfortran,
+ mpi-default-dev,
+ texinfo
+Build-Depends-Indep: ghostscript (>> 8.63), transfig
+Vcs-Git: git://git.debian.org/git/debian-science/packages/fftw3.git
+Vcs-Browser: http://git.debian.org/?p=debian-science/packages/fftw3.git
+Homepage: http://fftw.org
+Standards-Version: 3.9.4
+
+Package: libfftw3-3
+Architecture: any
+Depends: libfftw3-double3 (=${binary:Version}),
+ libfftw3-single3 (=${binary:Version}),
+ ${misc:Depends},
+ ${shlibs:Depends}
+Suggests: libfftw3-bin, libfftw3-dev
+Multi-Arch: same
+Section: oldlibs
+Priority: extra
+Description: Library for computing Fast Fourier Transforms
+ The FFTW library computes Fast Fourier Transforms (FFT) in one or more
+ dimensions. It is extremely fast.
+ This package is a transitional package depending on the packages containing
+ the single and double precision libraries.
+ .
+ To get the static library and the header files, you need to install
+ libfftw3-dev. For documentation, see libfftw3-doc.
+
+Package: libfftw3-single3
+Architecture: any
+Pre-Depends: multiarch-support
+Depends: ${misc:Depends}, ${shlibs:Depends}
+Suggests: libfftw3-bin, libfftw3-dev
+Multi-Arch: same
+Replaces: libfftw3-3 (<< 3.3.3-1)
+Breaks: libfftw3-3 (<< 3.3.3-1)
+Description: Library for computing Fast Fourier Transforms - Single precision
+ The FFTW library computes Fast Fourier Transforms (FFT) in one or more
+ dimensions. It is extremely fast. This package contains the shared library
+ for single precision transforms.
+ .
+ To get the static library and the header files, you need to install
+ libfftw3-dev. For documentation, see libfftw3-doc.
+
+Package: libfftw3-double3
+Architecture: any
+Pre-Depends: multiarch-support
+Depends: ${misc:Depends}, ${shlibs:Depends}
+Suggests: libfftw3-bin, libfftw3-dev
+Multi-Arch: same
+Replaces: libfftw3-3 (<< 3.3.3-1)
+Breaks: libfftw3-3 (<< 3.3.3-1)
+Description: Library for computing Fast Fourier Transforms - Double precision
+ The FFTW library computes Fast Fourier Transforms (FFT) in one or more
+ dimensions. It is extremely fast. This package contains the shared library
+ for double precision transforms.
+ .
+ To get the static library and the header files, you need to install
+ libfftw3-dev. For documentation, see libfftw3-doc.
+
+Package: libfftw3-long3
+Architecture: amd64 hurd-i386 i386 ia64 kfreebsd-amd64 kfreebsd-i386 powerpc powerpcspe s390 s390x sparc
+Pre-Depends: multiarch-support
+Depends: ${misc:Depends}, ${shlibs:Depends}
+Suggests: libfftw3-bin, libfftw3-dev
+Multi-Arch: same
+Replaces: libfftw3-3 (<< 3.3.3-1)
+Breaks: libfftw3-3 (<< 3.3.3-1)
+Description: Library for computing Fast Fourier Transforms - Long precision
+ The FFTW library computes Fast Fourier Transforms (FFT) in one or more
+ dimensions. It is extremely fast. This package contains the shared library
+ for long double precision transforms.
+ .
+ To get the static library and the header files, you need to install
+ libfftw3-dev. For documentation, see libfftw3-doc.
+
+Package: libfftw3-quad3
+Architecture: amd64 hurd-i386 i386 ia64 kfreebsd-amd64 kfreebsd-i386
+Pre-Depends: multiarch-support
+Depends: ${misc:Depends}, ${shlibs:Depends}
+Suggests: libfftw3-bin, libfftw3-dev
+Multi-Arch: same
+Description: Library for computing Fast Fourier Transforms - Quad precision
+ The FFTW library computes Fast Fourier Transforms (FFT) in one or more
+ dimensions. It is extremely fast. This package contains the shared library
+ for quad precision transforms.
+ .
+ To get the static library and the header files, you need to install
+ libfftw3-dev. For documentation, see libfftw3-doc.
+
+Package: libfftw3-bin
+Architecture: any
+Depends: ${misc:Depends}, ${shlibs:Depends}
+Multi-Arch: foreign
+Replaces: libfftw3-dev (<< 3.3.2-1)
+Breaks: libfftw3-dev (<< 3.3.2-1)
+Description: Library for computing Fast Fourier Transforms - Tools
+ The FFTW library computes Fast Fourier Transforms (FFT) in one or more
+ dimensions. It is extremely fast.
+ .
+ This package contains the wisdom management tools.
+
+Package: libfftw3-mpi3
+Architecture: any
+Pre-Depends: multiarch-support
+Depends: ${misc:Depends}, ${shlibs:Depends}
+Suggests: libfftw3-mpi-dev
+Multi-Arch: same
+Description: MPI Library for computing Fast Fourier Transforms
+ The FFTW library computes Fast Fourier Transforms (FFT) in one or more
+ dimensions. It is extremely fast. This package contains the shared library
+ versions of the fftw libraries in single, double and long double precisions.
+ Note that on some architectures double is the same as long double in which
+ case there is no long double library.
+ .
+ To get the static library and the header files, you need to install
+ libfftw3-mpi-dev. For documentation, see libfftw3-doc.
+
+Package: libfftw3-dev
+Architecture: any
+Section: libdevel
+Depends: libfftw3-bin (=${binary:Version}),
+ libfftw3-double3 (=${binary:Version}),
+ libfftw3-long3 (=${binary:Version}) [!armel !armhf !mips !mipsel],
+ libfftw3-quad3 (=${binary:Version}) [amd64 hurd-i386 i386 ia64 kfreebsd-amd64 kfreebsd-i386],
+ libfftw3-single3 (=${binary:Version}),
+ ${misc:Depends},
+ ${shlibs:Depends}
+Provides: fftw3-dev
+Replaces: fftw3-dev
+Conflicts: fftw3-dev
+Multi-Arch: same
+Description: Library for computing Fast Fourier Transforms - development
+ The FFTW library computes Fast Fourier Transforms (FFT) in one or more
+ dimensions. It is extremely fast. This package contains the statically linked
+ library, header files and test programs.
+ .
+ This package contains the header files and static libraries.
+ For documentation, see libfftw3-doc.
+
+Package: libfftw3-mpi-dev
+Architecture: any
+Section: libdevel
+Depends: libfftw3-mpi3 (=${binary:Version}), ${misc:Depends}, ${shlibs:Depends}
+Description: MPI Library for computing Fast Fourier Transforms - development
+ The FFTW library computes Fast Fourier Transforms (FFT) in one or more
+ dimensions. It is extremely fast. This package contains the statically linked
+ library, header files and test programs.
+ .
+ This package contains the header files and static libraries for the
+ mpi libraries. For documentation, see libfftw3-doc.
+
+Package: libfftw3-doc
+Architecture: all
+Section: doc
+Depends: ${misc:Depends}
+Suggests: libfftw3-3
+Provides: fftw3-doc
+Replaces: fftw3-doc
+Conflicts: fftw3-doc
+Description: Documentation for fftw version 3
+ The FFTW library computes Fast Fourier Transforms (FFT) in one or more
+ dimensions. It is extremely fast. This package contains the documentation for
+ the fftw3 library.
+
+Package: libfftw3-dbg
+Architecture: any
+Section: debug
+Priority: extra
+Depends: libfftw3-dev (=${binary:Version}), ${misc:Depends}, ${shlibs:Depends}
+Description: Library for computing Fast Fourier Transforms - debug symbols
+ The FFTW library computes Fast Fourier Transforms (FFT) in one or more
+ dimensions. It is extremely fast. This package contains the statically linked
+ library, header files and test programs.
+ .
+ This package contains debug packages for both serial and MPI versions.
+ .
+ For documentation, see libfftw3-doc.
Added: packages-metadata/f/fftw3.copyright
===================================================================
--- packages-metadata/f/fftw3.copyright (rev 0)
+++ packages-metadata/f/fftw3.copyright 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,20 @@
+This package was debianized by James A. Treacy treacy at debian.org on
+Tue, 22 Apr 2003 12:50:10 -0500
+
+It was downloaded from http://fftw.org/download.html
+
+The homepage for fftw is at http://fftw.org/
+
+Copyright:
+
+ Copyright (c) 2003, 2007-8 Matteo Frigo
+ Copyright (c) 2003, 2007-8 Massachusetts Institute of Technology
+
+License:
+
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+
+ A copy of the GPL can be found in /usr/share/common-licenses/GPL-2
Added: packages-metadata/g/gnuplot.control
===================================================================
--- packages-metadata/g/gnuplot.control (rev 0)
+++ packages-metadata/g/gnuplot.control 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,111 @@
+Source: gnuplot
+Section: math
+Priority: optional
+Maintainer: Debian Science Team <debian-science-maintainers at lists.alioth.debian.org>
+Uploaders: Anton Gladky <gladky.anton at gmail.com>
+Standards-Version: 3.9.3
+DM-Upload-Allowed: yes
+Build-Depends: debhelper (>= 8.9.10), libpng-dev, libx11-dev, libxt-dev,
+ pkg-config, texinfo, texlive-latex-base, texlive-latex-recommended,
+ texlive-latex-extra, liblua5.1-dev,
+ zlib1g-dev, libgd2-noxpm-dev, libwxgtk2.8-dev, libcairo2-dev,
+ libpango1.0-dev, libedit-dev, autoconf, automake,
+ libqt4-dev (>=4:4.5)
+Homepage: http://gnuplot.sourceforge.net/
+Vcs-Git: git://git.debian.org/git/debian-science/packages/gnuplot.git
+Vcs-Browser: http://git.debian.org/?p=debian-science/packages/gnuplot.git
+
+Package: gnuplot
+Architecture: all
+Depends: gnuplot-nox | gnuplot-x11 | gnuplot-qt, ${misc:Depends}
+Suggests: gnuplot-doc
+Description: Command-line driven interactive plotting program
+ Gnuplot is a portable command-line driven interactive data and function
+ plotting utility that supports lots of output formats, including drivers
+ for many printers, (La)TeX, (x)fig, Postscript, and so on. The X11-output
+ is packaged in gnuplot-x11.
+ .
+ Data files and self-defined functions can be manipulated by the internal
+ C-like language. Can perform smoothing, spline-fitting, or nonlinear fits,
+ and can work with complex numbers.
+ .
+ This package is for transition and to install a full-featured gnuplot
+ supporting the X11-output.
+
+Package: gnuplot-nox
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Conflicts: gnuplot-x11, gnuplot-qt
+Recommends: groff, fonts-liberation
+Suggests: gnuplot-doc
+Description: Command-line driven interactive plotting program. No-X package
+ Gnuplot is a portable command-line driven interactive data and function
+ plotting utility that supports lots of output formats, including drivers
+ for many printers, (La)TeX, (x)fig, Postscript, and so on. The X11-output
+ is packaged in gnuplot-x11. The QT-output is packaged in gnuplot-qt.
+ .
+ Data files and self-defined functions can be manipulated by the internal
+ C-like language. Can perform smoothing, spline-fitting, or nonlinear fits,
+ and can work with complex numbers.
+ .
+ This package is for working without an X server.
+
+Package: gnuplot-x11
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Conflicts: gnuplot-qt, gnuplot-nox
+Suggests: gnuplot-doc
+Provides: gnuplot-nox
+Description: Command-line driven interactive plotting program. X-package
+ Gnuplot is a portable command-line driven interactive data and function
+ plotting utility that supports lots of output formats, including drivers
+ for many printers, (La)TeX, (x)fig, Postscript, and so on. The X11-output
+ is packaged in gnuplot-x11.
+ .
+ Data files and self-defined functions can be manipulated by the internal
+ C-like language. Can perform smoothing, spline-fitting, or nonlinear fits,
+ and can work with complex numbers.
+ .
+ This package contains the terminal driver that enables gnuplot to plot
+ images interactively under X11. Most users will want this, it is however
+ packaged separately so that low-end systems don't need X installed to use
+ gnuplot.
+
+Package: gnuplot-qt
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Conflicts: gnuplot-x11, gnuplot-nox
+Suggests: gnuplot-doc
+Provides: gnuplot-nox, gnuplot-x11
+Description: Command-line driven interactive plotting program. QT-package
+ Gnuplot is a portable command-line driven interactive data and function
+ plotting utility that supports lots of output formats, including drivers
+ for many printers, (La)TeX, (x)fig, Postscript, and so on.
+ .
+ Data files and self-defined functions can be manipulated by the internal
+ C-like language. Can perform smoothing, spline-fitting, or nonlinear fits,
+ and can work with complex numbers.
+ .
+ This package contains the terminal driver that enables gnuplot to plot
+ images interactively under X11. Most users will want this, it is however
+ packaged separately so that low-end systems don't need X installed to use
+ gnuplot.
+ .
+ The package provides gnuplot-x11 and gnuplot-nox terminals plus an
+ additional QT-terminal for output (not default one).
+
+Package: gnuplot-doc
+Architecture: all
+Section: doc
+Depends: ${misc:Depends}
+Description: Command-line driven interactive plotting program. Doc-package
+ Gnuplot is a portable command-line driven interactive data and function
+ plotting utility that supports lots of output formats, including drivers
+ for many printers, (La)TeX, (x)fig, Postscript, and so on. The X11-output
+ is packaged in gnuplot-x11.
+ .
+ Data files and self-defined functions can be manipulated by the internal
+ C-like language. Can perform smoothing, spline-fitting, or nonlinear fits,
+ and can work with complex numbers.
+ .
+ This package contains the additional documentation.
Added: packages-metadata/g/gnuplot.copyright
===================================================================
--- packages-metadata/g/gnuplot.copyright (rev 0)
+++ packages-metadata/g/gnuplot.copyright 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,111 @@
+Author:
+ Thomas Williams
+ Colin Kelley
+Download: http://gnuplot.sourceforge.net/
+
+Files: *
+Copyright: Copyright 1986-1993, 1998, 2004 Thomas Williams, Colin Kelley
+License: other
+ Permission to use, copy, and distribute this software and its
+ documentation for any purpose with or without fee is hereby granted,
+ .
+ provided that the above copyright notice appear in all copies and that
+ both that copyright notice and this permission notice appear in supporting
+ documentation.
+ .
+ Permission to modify the software is granted, but not the right to
+ distribute the complete modified source code. Modifications are to be
+ distributed as patches to the released version. Permission to distribute
+ binaries produced by compiling modified sources is granted, provided you
+ 1. distribute the corresponding source modifications from the released
+ version in the form of a patch file along with the binaries,
+ 2. add special version identification to distinguish your version in
+ addition to the base release version number,
+ 3. provide your name and address as the primary contact for the support
+ of your modified version, and
+ 4. retain our contact information in regard to use of the base software.
+ Permission to distribute the released version of the source code along
+ with corresponding source modifications in the form of a patch file is
+ granted with same provisions 2 through 4 for binary distributions.
+ .
+ This software is provided "as is" without express or implied warranty to
+ the extent permitted by applicable law.
+
+Files: src/wxterminal/*
+Copyright: Copyright 2005,2006 Timothee Lecomte
+License: other
+ Permission to use, copy, and distribute this software and its
+ documentation for any purpose with or without fee is hereby granted,
+ .
+ provided that the above copyright notice appear in all copies and that
+ both that copyright notice and this permission notice appear in supporting
+ documentation.
+ .
+ Permission to modify the software is granted, but not the right to
+ distribute the complete modified source code. Modifications are to be
+ distributed as patches to the released version. Permission to distribute
+ binaries produced by compiling modified sources is granted, provided you
+ 1. distribute the corresponding source modifications from the released
+ version in the form of a patch file along with the binaries,
+ 2. add special version identification to distinguish your version in
+ addition to the base release version number,
+ 3. provide your name and address as the primary contact for the support
+ of your modified version, and
+ 4. retain our contact information in regard to use of the base software.
+ Permission to distribute the released version of the source code along
+ with corresponding source modifications in the form of a patch file is
+ granted with same provisions 2 through 4 for binary distributions.
+ .
+ This software is provided "as is" without express or implied warranty to
+ the extent permitted by applicable law.
+ .
+ Alternatively, the contents of this file may be used under the terms of
+ the GNU General Public License Version 2 or later (the "GPL"), in which
+ case the provisions of GPL are applicable instead of those above. If you
+ wish to allow use of your version of this file only under the terms of the
+ GPL and not to allow others to use your version of this file under the
+ above gnuplot license, indicate your decision by deleting the provisions
+ above and replace them with the notice and other provisions required by
+ the GPL. If you do not delete the provisions above, a recipient may use
+ your version of this file under either the GPL or the gnuplot license.
+
+Files: lisp/*
+Copyright:
+ gnuplot.el: (C) 1998 Phil Type and Bruce Ravel, 1999-2002 Bruce Ravel
+ gnuplot-gui.el: (C) 1998-2000 Bruce Ravel
+ info-look.20.2.el: (C) 1995,1996,1997 Ralph Schleicher.
+ info-look.20.3.el: (C) 1995,1996,1997, 1998 Free Software Foundation, Inc.
+License: GPL-2+.
+ This program is free software; you can redistribute it and/or modify it
+ under the terms of the GNU General Public License as published by the Free
+ Software Foundation; either version 2 of the License, or (at your option)
+ any later version.
+ .
+ This program is distributed in the hope that it will be useful, but
+ WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
+ or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
+ for more details.
+
+Files: debian/*
+Copyright: (C) 2008 Bradley Smith <brad at brad-smith.co.uk>
+License: MIT
+ Permission is hereby granted, free of charge, to any person obtaining a
+ copy of this software and associated documentation files (the "Software"),
+ to deal in the Software without restriction, including without limitation
+ the rights to use, copy, modify, merge, publish, distribute, sublicense,
+ and/or sell copies of the Software, and to permit persons to whom the
+ Software is furnished to do so, subject to the following conditions:
+ .
+ The above copyright notice and this permission notice shall be included in
+ all copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
+ THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
+ FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
+ DEALINGS IN THE SOFTWARE.
+
+On Debian systems, the complete text of the GNU General Public License
+can be found in `/usr/share/common-licenses/GPL-2'.
Added: packages-metadata/g/gperiodic.control
===================================================================
--- packages-metadata/g/gperiodic.control (rev 0)
+++ packages-metadata/g/gperiodic.control 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,20 @@
+Source: gperiodic
+Section: science
+Priority: optional
+Maintainer: Debichem Team <debichem-devel at lists.alioth.debian.org>
+Uploaders: Daniel Leidert (dale) <daniel.leidert at wgdd.de>
+Build-Depends: debhelper (>> 7.0.50~), libgtk2.0-dev (>> 2.6)
+Standards-Version: 3.9.3
+Homepage: http://www.frantz.fi/software/gperiodic.php
+Vcs-Browser: http://svn.debian.org/wsvn/debichem/unstable/gperiodic/
+Vcs-Svn: svn://svn.debian.org/svn/debichem/unstable/gperiodic/
+DM-Upload-Allowed: yes
+
+Package: gperiodic
+Architecture: any
+Depends: ${misc:Depends}, ${shlibs:Depends}
+Description: periodic table application
+ GPeriodic is a small X/GTK+-based program which allows you to
+ browse through a periodic table of chemical elements, and view
+ somewhat detailed information on each of the elements.
+ 118 elements are currently listed.
Added: packages-metadata/g/gperiodic.copyright
===================================================================
--- packages-metadata/g/gperiodic.copyright (rev 0)
+++ packages-metadata/g/gperiodic.copyright 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,26 @@
+This package was debianized by Jim Lynch <jim at laney.edu> on
+Tue, 29 Jun 1999 02:53:26 -0700. It was later maintained by Sebastien Bacher.
+The current maintainer is Daniel Leidert <daniel.leidert at wgdd.de>.
+
+Original sources can be found at:
+
+ http://www.frantz.fi/software/gperiodic.php
+
+ Older versions may be found at:
+ http://www.acclab.helsinki.fi/~frantz/software/gperiodic.php
+
+Upstream author:
+
+ Jonas Frantz <jonas.frantz at helsinki.fi>
+
+ This program was originally written by Kyle R. Burton <mortis at voicenet.com>.
+
+Copyright:
+
+ Copyright (c) 2000-2007 Jonas Frantz <frantz at acclab.helsinki.fi>
+
+This program is licensed under the GNU GPL.
+
+ On Debian systems, a copy of the GPL can be found in:
+ /usr/share/common-licenses/GPL
+
Added: packages-metadata/i/invesalius.control
===================================================================
--- packages-metadata/i/invesalius.control (rev 0)
+++ packages-metadata/i/invesalius.control 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,46 @@
+Source: invesalius
+Section: graphics
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>,
+ Thiago Franco de Moraes <tfmoraes at cti.gov.br>
+Build-Depends-Indep: debhelper (>= 9), python-support, python, python-casmoothing
+Standards-Version: 3.9.4
+Homepage: http://www.cti.gov.br/invesalius/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/invesalius/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/invesalius/trunk/
+
+Package: invesalius
+Architecture: all
+Depends: ${python:Depends}, ${misc:Depends}, python-numpy, python-wxgtk2.8,
+ python-imaging, libvtk5.8, libgdcm2.0 | libgdcm2.2, python-gdcm,
+ python-vtkgdcm, python-casmoothing, python-nibabel, python-serial
+Description: 3D medical imaging reconstruction software
+ InVesalius generates 3D medical imaging reconstructions based on a sequence of
+ 2D DICOM files acquired with CT or MRI equipments. InVesalius is
+ internationalized (currently available in English, Portuguese, French, German,
+ Spanish, Greek and Chinese) and provides several tools:
+ * DICOM support including: (a) ACR-NEMA version 1 and 2; (b) DICOM
+ version 3.0 (including various encodings of JPEG -lossless and lossy-, RLE)
+ * Image manipulation features (zoom, pan, rotation, brightness/contrast,
+ etc)
+ * Segmentation based on 2D slices
+ * Pre-defined threshold ranges according to tissue of interest
+ * Edition tools (similar to Paint Brush) based on 2D slices
+ * 3D surface creation
+ * 3D surface connectivity tools
+ * 3D surface exportation (including: binary STL, OBJ, VRML, Inventor)
+ * High-quality volume rendering projection
+ * Pre-defined volume rendering presets
+ * Volume rendering crop plane
+ * Picture exportation (including: BMP, TIFF, JPG, PostScript, POV-Ray)
+XB-Python-Version: ${python:Versions}
+
+Package: invesalius-examples
+Architecture: all
+Depends: ${misc:Depends}
+Description: examples for 3D medical imaging reconstruction software
+ InVesalius generates 3D medical imaging reconstructions based on a sequence of
+ 2D DICOM files acquired with CT or MRI equipments.
+ .
+ This package contains a sample file to open in InVesalius.
Added: packages-metadata/l/latexdiff.control
===================================================================
--- packages-metadata/l/latexdiff.control (rev 0)
+++ packages-metadata/l/latexdiff.control 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,34 @@
+Source: latexdiff
+Maintainer: Debian Perl Group <pkg-perl-maintainers at lists.alioth.debian.org>
+Uploaders: David Bremner <bremner at debian.org>
+Section: tex
+Priority: optional
+Build-Depends: debhelper (>= 8),
+ texlive-latex-base,
+ texlive-generic-recommended
+Standards-Version: 3.9.4
+Vcs-Browser: http://git.debian.org/?p=pkg-perl/packages/latexdiff.git
+Vcs-Git: git://anonscm.debian.org/git/pkg-perl/packages/latexdiff.git
+Homepage: http://bullard.esc.cam.ac.uk/~tilmann/soft.html
+
+Package: latexdiff
+Architecture: all
+Depends: ${perl:Depends},
+ ${misc:Depends}
+Recommends: texlive-latex-base,
+ texlive-latex-extra
+Suggests: subversion | cvs | rcs
+Description: utility to mark up significant differences between LaTeX files
+ latexdiff compares two LaTeX files and marks up significant differences
+ between them (i.e. a diff for LaTeX files). It generates a new LaTeX file
+ containing the annotated differences.
+ .
+ Various options are available for visual markup using standard LaTeX packages
+ such as 'color.sty'. Changes not directly affecting visible text, for example
+ in formatting commands, are still marked in the LaTeX source.
+ .
+ A rudimentary revision facilility is provided by another Perl script,
+ 'latexrevise', which accepts or rejects all changes. Manual editing of the
+ difference file can be used to override this default behaviour and accept or
+ reject selected changes only.
+
Added: packages-metadata/l/latexdiff.copyright
===================================================================
--- packages-metadata/l/latexdiff.copyright (rev 0)
+++ packages-metadata/l/latexdiff.copyright 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,100 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Source: http://developer.berlios.de/projects/latexdiff/
+Upstream-Name: latexdiff
+Upstream-Contact: F J Tilmann <ftilmann at users.berlios.de>
+
+Files: *
+Copyright: © 2004-2012 Frederik Tilmann <tillman at esc.cam.au.uk>
+License: GPL-3
+
+Files: latexdiff latexdiff-fast latexdiff-so latexdiff-vc latexrevise
+Copyright: © 2004-2012 Frederik Tilmann <tillman at esc.cam.au.uk>
+License: GPL-3+
+
+Files: contrib/latexdiff-wrap
+Copyright: © 2005-2006 Volker Kuhlmann <VolkerKuhlmann at gmx.de>
+License: GPL-2
+
+Files: contrib/latexchanges.py
+Copyright: 2009 Jan-Åke Larsson
+License: GPL-3
+Comment: It is assumed that this file is released under the same license as
+ the main files.
+
+Files: latexdiff-so latexdiff-fast (inlined Algorithm::Diff)
+Copyright: © 2000-2002 Ned Konz. All rights reserved.
+License: Artistic or GPL-1+
+
+Files: debian/*
+Copyright: © 2008, Pietro Abate <pietro.abate at pps.jussieu.fr>
+ © 2009-2012, David Bremner <bremner at unb.ca>
+License: GPL-2
+
+Files: debian/Makefile.manual
+Copyright: © 2004-2009 Frederik Tilmann <tillman at esc.cam.au.uk>
+License: GPL-2
+ To: David Bremner <bremner-dated-1251220141.24d29f at pivot.cs.unb.ca>
+ Subject: Re: latexdiff-man.pdf
+ From: Frederik Tilmann <fjt21 at cam.ac.uk>
+ Date: Wed, 12 Aug 2009 03:23:03 +0100
+ .
+ Hi David
+ .
+ thanks for taking on the packaging for Debian. Mostly, the
+ documentation is in pod format and already in the distribution (within
+ latexdiff and latexrevise, and latexdiff-vc), but there is a separate
+ .tex file as well.
+ Below is the snippet from my internal Makefile that prepares the
+ distribution (in directory dist) and I attach latexdiff-man.tex. All
+ the other files needed should be in the distribution (but the paths
+ will need adapting).
+ .
+ I note your comments regarding version numbering, and also will see
+ that I include the latexdiff-man.tex file in the next release on CTAN
+ but I have been rather busy of late, so the next release is not
+ imminent.
+ .
+ Regards
+ Frederik
+
+License: Artistic
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of the Artistic License, which comes with Perl.
+ .
+ On Debian GNU/Linux systems, the complete text of the Artistic License
+ can be found in `/usr/share/common-licenses/Artistic'.
+
+License: GPL-1+
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 1, or (at your option)
+ any later version.
+ .
+ On Debian systems, the complete text of version 1 of the GNU General
+ Public License can be found in `/usr/share/common-licenses/GPL-1'.
+
+License: GPL-2
+ This program is free software; you can redistribute it and/or modify it
+ under the terms of the GNU General Public License Version 2 as published
+ by the Free Software Foundation.
+ .
+ On Debian systems, the complete text of the version 2 of the GNU General
+ Public License can be found in `/usr/share/common-licenses/GPL-2'.
+
+License: GPL-3
+ This program is free software; you can redistribute it and/or modify it
+ under the terms of the GNU General Public License Version 3 as published
+ by the Free Software Foundation.
+ .
+ On Debian systems, the complete text of the version 3 of the GNU General
+ Public License can be found in `/usr/share/common-licenses/GPL-3'.
+
+License: GPL-3+
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 3, or (at your option)
+ any later version.
+ .
+ On Debian systems, the complete text of version 3 of the GNU General
+ Public License can be found in `/usr/share/common-licenses/GPL-3'.
+
Added: packages-metadata/l/libchipcard.control
===================================================================
--- packages-metadata/l/libchipcard.control (rev 0)
+++ packages-metadata/l/libchipcard.control 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,90 @@
+Source: libchipcard
+Section: libs
+Priority: optional
+Maintainer: Micha Lenk <micha at debian.org>
+Build-Depends: debhelper (>= 7.0.50~), libgwenhywfar60-dev (>= 4),
+ gawk, libpcsclite-dev, zlib1g-dev
+Standards-Version: 3.9.3.0
+Vcs-Browser: http://svn.debian.org/wsvn/aqbanking/libchipcard/trunk/
+Vcs-Svn: svn://svn.debian.org/svn/aqbanking/libchipcard/trunk
+Homepage: http://www.aquamaniac.de/sites/libchipcard/
+
+Package: libchipcard-dev
+Section: libdevel
+Architecture: any
+Priority: extra
+Depends: libchipcard6 (= ${binary:Version}),
+ libchipcard-data (>= ${source:Version}), ${misc:Depends}
+Description: API for smartcard readers
+ libchipcard provides an API for accessing smartcards. Examples are
+ memory cards, as well as HBCI (home banking), German GeldKarte
+ (electronic small change), and KVK (health insurance) cards.
+ .
+ This package contains the development files for libchipcard.
+
+Package: libchipcard6
+Section: libs
+Architecture: any
+Depends: libchipcard-data (>= ${source:Version}), ${shlibs:Depends},
+ ${misc:Depends}
+Priority: optional
+Description: library for accessing smartcards
+ libchipcard provides an API for accessing smartcards. Examples are
+ memory cards, as well as HBCI (home banking), German GeldKarte
+ (electronic small change), and KVK (health insurance) cards.
+ .
+ This package contains the client API.
+
+Package: libchipcard-data
+Section: libs
+Depends: ${misc:Depends}
+Architecture: all
+Priority: optional
+Description: configuration files for libchipcard
+ libchipcard provides an API for accessing smartcards. Examples are
+ memory cards, as well as HBCI (home banking), German GeldKarte
+ (electronic small change), and KVK (health insurance) cards.
+ .
+ This package contains configuration files for libchipcard.
+
+Package: libchipcard-tools
+Section: misc
+Architecture: any
+Priority: optional
+Pre-Depends: dpkg (>= 1.15.7.2)
+Depends: ${shlibs:Depends}, libchipcard-data (>= ${source:Version}),
+ ${misc:Depends}
+Breaks: libchipcardd0 (<< 4.2.7)
+Replaces: libchipcardd0 (<< 4.2.7)
+Description: tools for accessing chipcards
+ libchipcard provides an API for accessing smartcards. Examples are
+ memory cards, as well as HBCI (home banking), German GeldKarte
+ (electronic small change), and KVK (health insurance) cards.
+ .
+ This package contains tools for chipcards, e.g. geldkarte.
+
+Package: libchipcard-libgwenhywfar60-plugins
+Section: misc
+Architecture: any
+Priority: optional
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: crypttoken plugin to libgwenhywfar
+ libchipcard provides an API for accessing smartcards. Examples are
+ memory cards, as well as HBCI (home banking), German GeldKarte
+ (electronic small change), and KVK (health insurance) cards.
+ .
+ This package contains plugins to gwenhywfar providing cryptographic
+ services via smartcards.
+
+Package: libchipcard-libgwenhywfar47-plugins
+Section: oldlibs
+Architecture: all
+Priority: extra
+Depends: libchipcard-libgwenhywfar60-plugins
+Description: crypttoken plugin to libgwenhywfar - transitional dummy package
+ libchipcard provides an API for accessing smartcards. Examples are
+ memory cards, as well as HBCI (home banking), German GeldKarte
+ (electronic small change), and KVK (health insurance) cards.
+ .
+ Transitional package for renaming of libchipcard-libgwenhywfar47-plugins to
+ libchipcard-libgwenhywfar60-plugins.
Added: packages-metadata/l/libchipcard.copyright
===================================================================
--- packages-metadata/l/libchipcard.copyright (rev 0)
+++ packages-metadata/l/libchipcard.copyright 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,42 @@
+Initially this package was debianized by Thomas Viehmann <tv at beamnet.de> on
+Mon, 9 Aug 2004 21:57:32 +0200. Since summer 2007 the package is actively
+maintained by Micha Lenk <micha at lenk.info> with the help of Georg W. Leonhardt
+<repo at geole.info>.
+
+It was downloaded from http://sf.net/projects/libchipcard/
+See also http://www.libchipcard.de/
+
+Upstream Author: Martin Preuss <martin at libchipcard.de>
+
+Copyright: (c) 2003, 2004, 2005, 2006, 2007, 2008, 2009 by Martin Preuss
+
+Libchipcard is licensed under the GNU LGPL (see below).
+
+As the copyright holder of Libchipcard, Martin Preuss grants the following
+license exception:
+
+Martin Preuss explicitly allows the compilation and distribution of
+Libchipcard with the OpenSSL Toolkit.
+No developer is required to provide this exception in a derived work.
+
+License:
+
+ This package is free software; you can redistribute it and/or
+ modify it under the terms of the GNU Lesser General Public
+ License as published by the Free Software Foundation as
+ version 2.1.
+
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+ Lesser General Public License for more details.
+
+ You should have received a copy of the GNU Lesser General Public
+ License along with this package; if not, write to the Free Software
+ Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+
+On Debian systems, the complete text of the GNU Lesser General
+Public License can be found in `/usr/share/common-licenses/LGPL-2.1'.
+
+The Debian packaging is (C) 2007, Micha Lenk <micha at lenk.info> and
+is licensed under the GPL v2, see `/usr/share/common-licenses/GPL-2'.
Added: packages-metadata/m/matlab2tikz.control
===================================================================
--- packages-metadata/m/matlab2tikz.control (rev 0)
+++ packages-metadata/m/matlab2tikz.control 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,22 @@
+Source: matlab2tikz
+Section: math
+Priority: extra
+Maintainer: Debian Octave Group <pkg-octave-devel at lists.alioth.debian.org>
+Uploaders: Sébastien Villemot <sebastien at debian.org>
+Build-Depends: debhelper (>= 9)
+Standards-Version: 3.9.4
+Homepage: https://github.com/nschloe/matlab2tikz
+Vcs-Git: git://git.debian.org/git/pkg-octave/matlab2tikz.git
+Vcs-Browser: http://git.debian.org/?p=pkg-octave/matlab2tikz.git
+
+Package: matlab2tikz
+Architecture: all
+Depends: octave, ${misc:Depends}
+Recommends: texlive-pictures
+Description: converter of Octave plots to TikZ figures (for integration into LaTeX)
+ matlab2tikz is an Octave script for converting Octave figures into native
+ TikZ/Pgfplots figures, which can then easily be incorporated into a LaTeX
+ document. It supports the conversion of most Octave figures, including 2D and
+ 3D plots.
+ .
+ This package is also compatible with the (nonfree) MATLAB software.
Added: packages-metadata/m/matlab2tikz.copyright
===================================================================
--- packages-metadata/m/matlab2tikz.copyright (rev 0)
+++ packages-metadata/m/matlab2tikz.copyright 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,45 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: matlab2tikz
+Upstream-Contact: Nico Schlömer <nico.schloemer at gmail.com>
+Source: https://github.com/nschloe/matlab2tikz
+
+Files: *
+Copyright: 2008-2013 Nico Schlömer <nico.schloemer at gmail.com>
+License: BSD-2-clause
+
+Files: test/herrorbar.m
+Copyright: 2009 Jos van der Geest
+License: BSD-2-clause
+Comment: http://www.mathworks.com/matlabcentral/fileexchange/3963-herrorbar
+
+Files: test/eps2pdf.m
+Copyright: 2005 Primoz Cermelj <primoz.cermelj at email.si>
+License: BSD-2-clause
+Comment: http://www.mathworks.com/matlabcentral/fileexchange/5782-eps2pdf
+
+Files: debian/*
+Copyright: 2013 Sébastien Villemot <sebastien at debian.org>
+License: BSD-2-clause
+
+License: BSD-2-clause
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions are
+ met:
+ .
+ * Redistributions of source code must retain the above copyright
+ notice, this list of conditions and the following disclaimer.
+ * Redistributions in binary form must reproduce the above copyright
+ notice, this list of conditions and the following disclaimer in
+ the documentation and/or other materials provided with the distribution
+ .
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+ AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
+ LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+ CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+ SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+ INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+ CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
+ POSSIBILITY OF SUCH DAMAGE.
Added: packages-metadata/m/mia.control
===================================================================
--- packages-metadata/m/mia.control (rev 0)
+++ packages-metadata/m/mia.control 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,100 @@
+Source: mia
+Priority: optional
+Maintainer: Gert Wollny <gw.fossdev at gmail.com>
+Build-Depends: debhelper (>= 9.0.0), cmake (>= 2.8.8), libboost-all-dev (>= 1.46.1), libxml++2.6-dev (>= 2.34.1), libitpp-dev (>= 4.2), libtbb-dev (>= 3.0), libopenexr-dev (>= 1.6.1), libpng-dev, libdcmtk2-dev (>= 3.6.0), libtiff4-dev (>= 3.9.5), libnlopt-dev (>= 2.3), libgsl0-dev (>= 1.14), libblas-dev, doxygen, libfftw3-dev, xsltproc, docbook-xsl, python-lxml, libvtk5-dev, libgts-dev, libvistaio-dev (>=1.2.12)
+Standards-Version: 3.9.4
+Section: science
+Homepage: http://mia.sourceforge.net
+Vcs-Git:git://git.debian.org/debian-med/mia.git
+Vcs-Browser:http://git.debian.org/?p=debian-med/mia.git
+
+
+Package: libmia-2.0-dev
+Section: libdevel
+Architecture: any
+Recommends: libmia-2.0-doc
+Depends: libmia-2.0-8 (= ${binary:Version}), libxml++2.6-dev (>= 2.34.1), libitpp-dev (>= 4.2), libtbb-dev (>= 3.0), libgsl0-dev (>= 1.14), libboost-all-dev (>= 1.46.1), libfftw3-dev, libblas-dev, ${misc:Depends}
+Description: library for 2D and 3D gray scale image processing, development files
+ libmia comprises a set of libraries and plug-ins for general purpose
+ 2D and 3D gray scale image processing and basic handling of triangular
+ meshes. The libraries provide a basic infrastructure and generic
+ algorithms, that can be specialized by specifying the apropriate plug-ins.
+ This package provides the development files for the library.
+
+
+Package: libmia-2.0-doc
+Section: doc
+Architecture: all
+Enhances: libmia-2.0-dev
+Depends: ${misc:Depends}, libjs-jquery
+Description: library for 2D and 3D gray scale image processing, documentation
+ libmia comprises a set of libraries and plug-ins for general purpose
+ 2D and 3D gray scale image processing and basic handling of triangular
+ meshes. The libraries provide a basic infrastructure and generic
+ algorithms, that can be specialized by specifying the apropriate plug-ins.
+ This package provides the Doxygen generated API reference.
+
+
+Package: libmia-2.0-8
+Section: libs
+Architecture: any
+Pre-Depends: ${misc:Pre-Depends}
+Depends: ${shlibs:Depends}, ${misc:Depends}, libnlopt0 (>= 2.2.4), libopenexr6 (>= 1.6.1)
+Description: library for 2D and 3D gray scale image processing
+ libmia comprises a set of libraries and plug-ins for general purpose
+ 2D and 3D gray scale image processing and basic handling of triangular
+ meshes. The libraries provide a basic infrastructure and generic
+ algorithms, that can be specialized by specifying the apropriate plug-ins.
+
+Package: libmia-2.0-8-dbg
+Section: debug
+Architecture: any
+Depends: libmia-2.0-8 (= ${binary:Version}), ${misc:Depends}
+Priority: extra
+Description: Debug information for the MIA library
+ libmia comprises a set of libraries and plug.ins for general purpose
+ 2D and 3D gray scale image processing and basic handling of triangular
+ meshes. The libraries provide a basic infrastructure and generic
+ algorithms, that can be specialized by specifying the apropriate plug-ins.
+ libmia is library for general purpouse 2D and 3D gray scale image processing.
+ This package provides the debug information of the library.
+
+Package: mia-tools
+Architecture: any
+Recommends: mia-doc
+Depends: libmia-2.0-8 (= ${binary:Version}), ${shlibs:Depends}, ${misc:Depends}
+Description: Command line tools for gray scale image processing
+ Command lines tools to run general purpose image processing tasks on 2D
+ and 3D gray scale images, and basic operations on triangular meshes.
+ Supported image processing algorithms are image filtering, combining, image
+ registration, motion compensation for image series, and the estimation of
+ various statiistics over images.
+
+
+Package: mia-tools-doc
+Section: doc
+Architecture: all
+Enhances: mia-tools
+Depends: ${misc:Depends}
+Description: Cross-referenced documentation of the MIA command line tools
+ Cross referenced documentation of the command line tools and plug-ins that
+ are provided by the MIA gray scale image processing tool chain.
+ These lines tools to provide the means to run general purpose image
+ processing tasks on 2D and 3D gray scale images, and basic operations on
+ triangular meshes interactively from the command line. Supported image
+ processing algorithms are image filtering, combining, image registration,
+ motion compensation for image series, and the estimation of various
+ statistics over images.
+
+Package: mia-tools-dbg
+Section: debug
+Architecture: any
+Depends: mia-tools (= ${binary:Version}), ${misc:Depends}
+Priority: extra
+Description: Debugging information for the MIA command line tools
+ Debug information for the MIA command lines tools. These tools provide the
+ means to run general purpose image processing tasks on 2D and 3D gray scale
+ images, and basic operations on triangular meshes from the command line.
+ Supported image processing algorithms are image filtering, combining, image
+ registration, motion compensation for image series, and the estimation of
+ various statiistics over images.
Added: packages-metadata/m/mia.copyright
===================================================================
--- packages-metadata/m/mia.copyright (rev 0)
+++ packages-metadata/m/mia.copyright 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,29 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: mia
+Source: http://mia.sourceforge.net
+
+Files: *
+Copyright: Gert Wollny <gw.fossdev at gmail.com>
+License: GPL-3.0+
+
+Files: debian/*
+Copyright: 2012 wollny <gw.fossdev at gmail.com>
+License: GPL-3.0+
+
+License: GPL-3.0+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+ .
+ On Debian systems, the complete text of the GNU General
+ Public License version 3 can be found in "/usr/share/common-licenses/GPL-3".
+
Added: packages-metadata/o/orthanc.upstream
===================================================================
--- packages-metadata/o/orthanc.upstream (rev 0)
+++ packages-metadata/o/orthanc.upstream 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,6 @@
+Reference:
+ Author: S. Jodogne and C. Bernard and M. Devillers and E. Lenaerts and P. Coucke
+ Title: "Orthanc -- A Lightweight, RESTful DICOM Server for Healthcare and Medical Research"
+ Type: book
+ Booktitle: Proc. of the International Symposium on Biomedical Imaging
+ Year: 2013
Added: packages-metadata/p/proj.control
===================================================================
--- packages-metadata/p/proj.control (rev 0)
+++ packages-metadata/p/proj.control 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,107 @@
+Source: proj
+Section: science
+Priority: extra
+Maintainer: Debian GIS Project <pkg-grass-devel at lists.alioth.debian.org>
+Uploaders: Peter S Galbraith <psg at debian.org>, Francesco Paolo Lovergine <frankie at debian.org>
+Build-Depends: debhelper (>= 7), sharutils, dpatch
+Standards-Version: 3.8.3
+Homepage: http://trac.osgeo.org/proj/
+Vcs-Browser: http://svn.debian.org/wsvn/pkg-grass/packages/proj/
+Vcs-Svn: svn://svn.debian.org/pkg-grass/packages/proj/
+
+Package: proj
+Architecture: all
+Section: science
+Depends: libproj0 (>= 4.6.1-4), proj-bin (>= 4.6.1-4), libproj-dev (>= 4.6.1-4), ${misc:Depends}
+Description: Cartographic projection filter and library (transitional package)
+ Proj and invproj perform respective forward and inverse transformation
+ of cartographic data to or from Cartesian data with a wide range of
+ selectable projection functions (over 100 projections).
+ .
+ Geod and invgeod perform geodesic (Great Circle) computations for
+ determining latitude, longitude and back azimuth of a terminus point given
+ a initial point latitude, longitude, azimuth and distance (direct) or the
+ forward and back azimuths and distance between an initial and terminus
+ point latitudes and longitudes (inverse).
+ .
+ This is a transitional meta-package. You can safely remove it after upgrading.
+
+Package: proj-data
+Architecture: any
+Section: libs
+Conflicts: proj (<= 4.6.1-3)
+Replaces: proj (<= 4.6.1-3)
+Depends: ${misc:Depends}
+Description: Cartographic projection filter and library (transitional package)
+ Proj and invproj perform respective forward and inverse transformation
+ of cartographic data to or from Cartesian data with a wide range of
+ selectable projection functions (over 100 projections).
+ .
+ Geod and invgeod perform geodesic (Great Circle) computations for
+ determining latitude, longitude and back azimuth of a terminus point given
+ a initial point latitude, longitude, azimuth and distance (direct) or the
+ forward and back azimuths and distance between an initial and terminus
+ point latitudes and longitudes (inverse).
+ .
+ This package contains auxiliary projection datum grids used by the
+ library and tools.
+
+Package: libproj0
+Architecture: any
+Section: libs
+Depends: proj-data, ${shlibs:Depends}, ${misc:Depends}
+Suggests: proj-bin
+Conflicts: proj (<= 4.6.1-3)
+Replaces: proj (<= 4.6.1-3)
+Description: Cartographic projection library
+ Proj and invproj perform respective forward and inverse transformation
+ of cartographic data to or from Cartesian data with a wide range of
+ selectable projection functions (over 100 projections).
+ .
+ Geod and invgeod perform geodesic (Great Circle) computations for
+ determining latitude, longitude and back azimuth of a terminus point given
+ a initial point latitude, longitude, azimuth and distance (direct) or the
+ forward and back azimuths and distance between an initial and terminus
+ point latitudes and longitudes (inverse).
+ .
+ This package provides the PROJ4 shared library used by tools and third
+ parties programs.
+
+Package: libproj-dev
+Architecture: any
+Section: libdevel
+Depends: libproj0 (=${binary:Version}), ${shlibs:Depends}, ${misc:Depends}
+Suggests: proj-bin
+Conflicts: proj (<= 4.6.1-3)
+Replaces: proj (<= 4.6.1-3)
+Description: Cartographic projection library (development files)
+ Proj and invproj perform respective forward and inverse transformation
+ of cartographic data to or from Cartesian data with a wide range of
+ selectable projection functions (over 100 projections).
+ .
+ Geod and invgeod perform geodesic (Great Circle) computations for
+ determining latitude, longitude and back azimuth of a terminus point given
+ a initial point latitude, longitude, azimuth and distance (direct) or the
+ forward and back azimuths and distance between an initial and terminus
+ point latitudes and longitudes (inverse).
+ .
+ This package provides the PROJ4 development files.
+
+Package: proj-bin
+Architecture: any
+Section: science
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Conflicts: proj (<= 4.6.1-3)
+Replaces: proj (<= 4.6.1-3)
+Description: Cartographic projection library (tools)
+ Proj and invproj perform respective forward and inverse transformation
+ of cartographic data to or from Cartesian data with a wide range of
+ selectable projection functions (over 100 projections).
+ .
+ Geod and invgeod perform geodesic (Great Circle) computations for
+ determining latitude, longitude and back azimuth of a terminus point given
+ a initial point latitude, longitude, azimuth and distance (direct) or the
+ forward and back azimuths and distance between an initial and terminus
+ point latitudes and longitudes (inverse).
+ .
+ This package provides the PROJ4 binary tools.
Added: packages-metadata/p/proj.copyright
===================================================================
--- packages-metadata/p/proj.copyright (rev 0)
+++ packages-metadata/p/proj.copyright 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,67 @@
+This package was debianized by Peter S Galbraith psg at debian.org on
+Sun, 24 Oct 1999 14:13:26 -0400. It is currently maintained by
+the DebianGis team.
+
+The Debian orig.tar.gz files combines:
+
+ ftp://ftp.remotesensing.org/proj/proj-4.4.9.tar.gz
+ ftp://ftp.remotesensing.org/proj/proj-datumgrid-1.3.zip
+
+where the second is unzipped in the nad directory before configuring to add
+NAD27/NAD83 and NZGD49 datum conversion.
+
+Web page: http://www.remotesensing.org/proj
+Old Web pages: http://kai.er.usgs.gov/ftp/mapgenproj.html
+ http://www.vectaport.com/ivmaps/projinfo.html
+
+Version 4.3.3 was authored by:
+ Gerald (Jerry) Ian Evenden
+ email: gie at kai.er.usgs.gov gevenden at capecod.net
+ phone: (508)563-6766
+ P.O. Box 1027
+ N.Falmouth, MA 02556-1027
+
+ Proj is a U.S. Government work and is not eligible for U.S. copyright
+ protection. This is free software.
+
+ Here's what Jerry replied when I asked what the license was:
+
+ `The software was developed by the USGS and has no copyright
+ nor license. Do with it what you will. :-)'
+
+Maintenance of proj has been taken up by Frank Warmerdam <warmerda at home.com>
+under the following license:
+
+ All source, data files and other contents of the PROJ.4 package are
+ available under the following terms. Note that the PROJ 4.3 and earlier
+ was "public domain" as is common with US government work, but apparently
+ this is not a well defined legal term in many countries. I am placing
+ everything under the following MIT style license because I believe it is
+ effectively the same as public domain, allowing anyone to use the code as
+ they wish, including making proprietary derivatives.
+
+ Though I have put my own name as copyright holder, I don't mean to imply
+ I did the work. Essentially all work was done by Gerald Evenden.
+
+ --------------
+
+ Copyright (c) 2000, Frank Warmerdam
+
+ Permission is hereby granted, free of charge, to any person obtaining a
+ copy of this software and associated documentation files (the "Software"),
+ to deal in the Software without restriction, including without limitation
+ the rights to use, copy, modify, merge, publish, distribute, sublicense,
+ and/or sell copies of the Software, and to permit persons to whom the
+ Software is furnished to do so, subject to the following conditions:
+
+ The above copyright notice and this permission notice shall be included
+ in all copies or substantial portions of the Software.
+
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
+ OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
+ THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
+ FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
+ DEALINGS IN THE SOFTWARE.
+
Added: packages-metadata/p/python-clips.control
===================================================================
--- packages-metadata/p/python-clips.control (rev 0)
+++ packages-metadata/p/python-clips.control 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,21 @@
+Source: python-clips
+Section: python
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Thorsten Alteholz <debian at alteholz.de>
+Build-Depends: debhelper (>= 9),
+ python-all-dev
+Standards-Version: 3.9.4
+Homepage: http://sourceforge.net/projects/pyclips/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/python-clips/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/python-clips/trunk/
+
+Package: python-clips
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}
+Provides: ${python:Provides}
+Description: Python module to interface the CLIPS expert system shell library
+ CLIPS is an expert system shell / inference engine written by NASA
+ (see Debian package clips).
+ .
+ pyclips are the Python bindings to that engine.
Added: packages-metadata/p/python-clips.copyright
===================================================================
--- packages-metadata/p/python-clips.copyright (rev 0)
+++ packages-metadata/p/python-clips.copyright 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,64 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: pyclips
+Source: http://sourceforge.net/projects/pyclips/
+
+Files: *
+Copyright: 2002-2008 Francesco Garosi/JKS
+License: LGPL-2
+
+Files: CLIPSSrc.zip
+Copyright: 2006 Barry Cameron, Bebe Ly, Brian L. Donnell,
+ Chris Culbert, Gary D. Riley
+License: CLIPS
+
+Files: debian/*
+Copyright: 2013 Thorsten Alteholz <debian at alteholz.de>
+License: GPL-2.0+
+
+License: GPL-2.0+
+ This package is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>
+ .
+ On Debian systems, the complete text of the GNU General
+ Public License version 2 can be found in "/usr/share/common-licenses/GPL-2".
+
+License: LGPL-2
+ On Debian systems, the complete text of the GNU Lesser General
+ Public License version 2.1 can be found in "/usr/share/common-licenses/LGPL-2".
+
+License: CLIPS
+ CLIPS License Information
+ .
+ Permission is hereby granted, free of charge, to any person obtaining a
+ copy of this software and associated documentation files (the "Software"),
+ to deal in the Software without restriction, including without limitation
+ the rights to use, copy, modify, merge, publish, distribute, and/or sell
+ copies of the Software, and to permit persons to whom the Software is
+ furnished to do so.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT OF THIRD PARTY RIGHTS.
+ IN NO EVENT SHALL THE AUTHORS BE LIABLE FOR ANY CLAIM, OR ANY SPECIAL
+ INDIRECT OR CONSEQUENTIAL DAMAGES, OR ANY DAMAGES WHATSOEVER RESULTING FROM
+ LOSS OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE
+ OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR
+ PERFORMANCE OF THIS SOFTWARE.
+ .
+ CLIPS is released as public domain software and as such you are under no
+ obligation to pay for its use. However, if you derive commercial or
+ monetary benefit from use of the software or just want to show support,
+ please consider making a voluntary payment based on the worth of the
+ software to you as compensation for the time and effort required to
+ develop and maintain CLIPS. Payments can be made online at
+ http://order.kagi.com/?JKT.
Added: packages-metadata/p/python-mzml.control
===================================================================
--- packages-metadata/p/python-mzml.control (rev 0)
+++ packages-metadata/p/python-mzml.control 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,52 @@
+Source: python-mzml
+Maintainer: The Debichem Group <debichem-devel at lists.alioth.debian.org>
+Uploaders: Filippo Rusconi <lopippo at debian.org>
+Section: python
+Priority: optional
+Build-Depends: python-all (>= 2.6.6-3),
+ debhelper (>= 7.0.50~),
+ dpkg-dev (>= 1.16.1~),
+ python-sphinx (>= 1.1.3)
+Build-Depends-Indep: doxygen (>= 1.8.1.2),
+ texlive-extra-utils,
+ texlive-latex-extra,
+ latex-xcolor,
+ texlive-font-utils,
+ ghostscript,
+ texlive-fonts-recommended
+Standards-Version: 3.9.3
+Homepage: http://pymzml.github.com/
+Vcs-Git: git://git.debian.org/git/debichem/packages/python-mzml.git
+Vcs-Browser: http://git.debian.org/?p=debichem/packages/python-mzml.git
+
+Package: python-mzml
+Architecture: all
+Depends: ${misc:Depends},
+ ${python:Depends}
+Suggests: python-mzml-doc
+Description: mzML mass spectrometric data parsing
+ python-mzml is an extension to Python that offers:
+ - easy access to mass spectrometry (MS) data that allows
+ the rapid development of tools;
+ - a very fast parser for mzML data, the standard in
+ mass spectrometry data format;
+ - a set of functions to compare or handle spectra.
+
+Package: python-mzml-doc
+Section: doc
+Architecture: all
+Depends: libjs-jquery,
+ libjs-underscore,
+ ${shlibs:Depends},
+ ${misc:Depends}
+Description: mzML mass spectrometric data parsing - documentation
+ python-mzml is an extension to Python that offers:
+ - easy access to mass spectrometry (MS) data that allows
+ the rapid development of tools;
+ - a very fast parser for mzML data, the standard in
+ mass spectrometry data format;
+ - a set of functions to compare or handle spectra.
+ .
+ This package contains the documentation in PDF and HTML format,
+ along with the text sources (process with sphinx).
+
Added: packages-metadata/p/python-mzml.copyright
===================================================================
--- packages-metadata/p/python-mzml.copyright (rev 0)
+++ packages-metadata/p/python-mzml.copyright 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,50 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: pymzML
+Upstream-Contact: Dr. Christian Fufezan (christian at fufezan.net)
+Source: http://pymzml.github.com/dist/pymzml.tar.bz2
+
+Files: *
+Copyright: 2010-2011 T. Bald
+ 2010-2011 J. Barth
+ 2010-2011 A. Niehues
+ 2010-2011 M. Specht
+ 2010-2011 M. Hippler
+ 2010-2011 C. Fufezan (christian at fufezan.net)
+License: LGPL
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU Lesser General Public License as
+ published by the Free Software Foundation, either version 3 of the
+ License, or (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU Lesser General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+ .
+ On Debian systems, the full text of the GNU General Public
+ License version 3 can be found in the file
+ `/usr/share/common-licenses/LGPL-3'.
+
+Files: debian/*
+Copyright: 2012 Filippo Rusconi (lopippo at debian.org)
+License: GPL-3+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+ .
+ On Debian systems, the full text of the GNU General Public
+ License version 2 can be found in the file
+ `/usr/share/common-licenses/GPL-3'.
+
\ No newline at end of file
Added: packages-metadata/p/python-mzml.upstream
===================================================================
--- packages-metadata/p/python-mzml.upstream (rev 0)
+++ packages-metadata/p/python-mzml.upstream 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,14 @@
+Reference:
+ Author: Bald, T., Barth, J., Niehues, A., Specht, M., Hippler, M., and Fufezan, C.
+ Title: pymzML - Python module for high throughput bioinformatics on mass spectrometry data
+ Journal: Bioinformatics, UK
+ Year: 2012
+ Volume: 28
+ Number: 7
+ Pages: 1052-1053
+ DOI: 10.1093/bioinformatics/bts066
+ PMID: 22302572
+ URL: http://bioinformatics.oxfordjournals.org/content/25/20/2741.long
+ eprint: http://bioinformatics.oxfordjournals.org/content/early/2012/02/02/bioinformatics.bts066.full.pdf
+
+Repository : https://github.com/pymzml/pymzML
Added: packages-metadata/q/qrisk2.control
===================================================================
--- packages-metadata/q/qrisk2.control (rev 0)
+++ packages-metadata/q/qrisk2.control 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,35 @@
+Source: qrisk2
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>,
+ Thorsten Alteholz <debian at alteholz.de>
+Build-Depends: debhelper (>= 9),
+ xutils-dev
+Standards-Version: 3.9.4
+Homepage: http://qrisk.org/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/qrisk2/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/qrisk2/trunk/
+
+Package: qrisk2
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: cardiovascular disease risk calculator
+ You can use this calculator to work out your risk of having a heart
+ attack or stroke over the next ten years by answering some simple
+ questions. It is suitable for people who do not already have a diagnosis
+ of heart disease or stroke.
+ .
+ The QRISK®2 algorithm has been developed by doctors and academics
+ working in the UK National Health Service and is based on routinely
+ collected data from many thousands of GPs across the country who have
+ freely contributed data for medical research.
+ .
+ Whilst QRISK2 has been developed for use in the UK, it is being used
+ internationally. For non-UK use, if the postcode field is left blank the
+ score will be calculated using an average value. Users should note,
+ however, that CVD risk is likely to be under-estimated in patients from
+ deprived areas and over-estimated for patients from affluent areas. All
+ medical decisions need to be taken by a patient in consultation with
+ their doctor. The authors and the sponsors accept no responsibility for
+ clinical use or misuse of these score.
Added: packages-metadata/q/qrisk2.copyright
===================================================================
--- packages-metadata/q/qrisk2.copyright (rev 0)
+++ packages-metadata/q/qrisk2.copyright 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,17 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: QRISK®2
+Source: http://svn.clinrisk.co.uk/opensource/
+
+Files: *
+Copyright: © 2008-2012 ClinRisk Ltd.
+License: LGPLv3
+
+Files: debian/*
+Copyright: © 2012 Andreas Tille <tille at debian.org>
+ © 2013 Thorsten Alteholz <debian at alteholz.de>
+License: LGPLv3
+
+License: LGPLv3
+ On Debian systems, the complete text of the GNU Lesser General
+ Public License version 3 can be found in "/usr/share/common-licenses/LGPL-3".
+
Added: packages-metadata/q/qrisk2.upstream
===================================================================
--- packages-metadata/q/qrisk2.upstream (rev 0)
+++ packages-metadata/q/qrisk2.upstream 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,12 @@
+Reference:
+ Author: Julia Hippisley-Cox and Carol Coupland and Yana Vinogradova and John Robson and Rubin Minhas and Aziz Sheikh and Peter Brindle
+ Title: "Predicting cardiovascular risk in England and Wales: prospective derivation and validation of QRISK2"
+ Journal: British Medical Journal
+ Year: 2008
+ Volume: 336
+ Number: 7659
+ Pages: 1475-82
+ DOI: 10.1136/bmj.39609.449676.25
+ PMID: 18573856
+ URL: http://www.bmj.com/content/336/7659/1475
+ eprint: http://www.bmj.com/content/336/7659/1475.pdf%2Bhtml
Added: packages-metadata/t/tandem-mass.control
===================================================================
--- packages-metadata/t/tandem-mass.control (rev 0)
+++ packages-metadata/t/tandem-mass.control 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,37 @@
+Source: tandem-mass
+Section: science
+Priority: optional
+Maintainer: The Debichem Group <debichem-devel at lists.alioth.debian.org>
+Uploaders: Filippo Rusconi <lopippo at debian.org>
+Standards-Version: 3.9.3
+Build-Depends: debhelper (>= 7.0.50~),
+ dpkg-dev (>= 1.16.1~),
+ quilt (>= 0.60-2),
+ libexpat1-dev (>= 2.0.1)
+Homepage: http://www.thegpm.org/TANDEM/
+Vcs-Git: git://git.debian.org/git/debichem/packages/tandem-mass.git
+Vcs-Browser: http://git.debian.org/?p=debichem/packages/tandem-mass.git
+
+Package: tandem-mass
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: mass spectrometry software for protein identification
+ X! Tandem can match tandem mass spectra with peptide sequences, in a
+ process that is commonly used to perform protein identification.
+ .
+ This software has a very simple, unsophisticated application
+ programming interface (API): it simply takes an XML file of
+ instructions on its command line, and outputs the results into an XML
+ file, which has been specified in the input XML file. The output file
+ format is described at
+ \fI`http://www.thegpm.org/docs/X_series_output_form.pdf'\fR.
+ .
+ Unlike some earlier generation search engines, all of the X! Series
+ search engines calculate statistical confidence (expectation values)
+ for all of the individual spectrum-to-sequence assignments. They also
+ reassemble all of the peptide assignments in a data set onto the
+ known protein sequences and assign the statistical confidence that
+ this assembly and alignment is non-random. The formula for which can
+ be found here. Therefore, separate assembly and statistical analysis
+ software, e.g. PeptideProphet and ProteinProphet, do not need to be
+ used.
Added: packages-metadata/t/tandem-mass.copyright
===================================================================
--- packages-metadata/t/tandem-mass.copyright (rev 0)
+++ packages-metadata/t/tandem-mass.copyright 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,39 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+X-Debianized-By: Olivier Langella <olivier.langella at laposte.net>
+X-Debianized-Date: Thu, 15 Jan 2009 11:18:51 +0200
+X-Source-Downloaded-From: http://www.thegpm.org/TANDEM/
+X-Upstream-Author: Copyright © 2004, The Global Proteome Machine Organization
+
+Files: *
+Copyright: © 2004, The Global Proteome Machine Organization
+License: Artistic License 1.0
+ The Artistic License for all X! software, binaries and documentation
+ .
+ On Debian systems, the full text of the Artistic License version 1.0
+ can be found in the file `/usr/share/common-licenses/Artistic'.
+
+Files: debian/*
+Copyright: © 2010 Olivier Langella <olivier.langella at laposte.net>
+ 2012 Filippo Rusconi <lopippo at debian.org>
+License: GPL-3+
+ This program is free software; you can redistribute it
+ and/or modify it under the terms of the GNU General Public
+ License as published by the Free Software Foundation; either
+ version 3 of the License, or (at your option) any later
+ version.
+ .
+ This program is distributed in the hope that it will be
+ useful, but WITHOUT ANY WARRANTY; without even the implied
+ warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ PURPOSE. See the GNU General Public License for more
+ details.
+ .
+ You should have received a copy of the GNU General Public
+ License along with this package; if not, write to the Free
+ Software Foundation, Inc., 51 Franklin St, Fifth Floor,
+ Boston, MA 02110-1301 USA
+ .
+ On Debian systems, the full text of the GNU General Public
+ License version 3 can be found in the file
+ `/usr/share/common-licenses/GPL-3'.
+
Added: packages-metadata/u/umegaya.control
===================================================================
--- packages-metadata/u/umegaya.control (rev 0)
+++ packages-metadata/u/umegaya.control 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,30 @@
+Source: umegaya
+Maintainer: Charles Plessy <plessy at debian.org>
+Section: database
+Priority: optional
+Build-Depends: debhelper (>= 9),
+ pandoc,
+ perl,
+ perl-doc
+Standards-Version: 3.9.4
+Vcs-Browser: http://source.umegaya.branchable.com/?p=source.git;a=tree
+Vcs-Git: git://umegaya.branchable.com/
+Homepage: http://umegaya.branchable.com
+
+Package: umegaya
+Architecture: all
+Depends: devscripts,
+ libberkeleydb-perl,
+ libyaml-libyaml-perl,
+ libyaml-appconfig-perl,
+ libwww-perl,
+ subversion,
+ ${perl:Depends},
+ ${misc:Depends}
+Recommends: curl
+Description: Umegaya is a MEtadata GAtherer using YAml
+ Aggregator of meta information about the software packages. The central
+ concept is that the metadata is accumlated by the package maintainer in a
+ version control system containing the source package, in a file called
+ debian/upstream, and collected by the web aggregator each time it is accessed.
+
Added: packages-metadata/u/umegaya.copyright
===================================================================
--- packages-metadata/u/umegaya.copyright (rev 0)
+++ packages-metadata/u/umegaya.copyright 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,28 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Source: http://source.umegaya.branchable.com/?p=source.git;a=tags
+
+Files: *
+Copyright: none claimed
+License: BOLA-1.1
+ BOLA - Buena Onda License Agreement (v1.1)
+ ------------------------------------------
+ .
+ This work is provided 'as-is', without any express or implied warranty. In no
+ event will the authors be held liable for any damages arising from the use of
+ this work.
+ .
+ To all effects and purposes, this work is to be considered Public Domain.
+ .
+ .
+ However, if you want to be "buena onda", you should:
+ .
+ 1. Not take credit for it, and give proper recognition to the authors.
+ 2. Share your modifications, so everybody benefits from them.
+ 3. Do something nice for the authors.
+ 4. Help someone who needs it: sign up for some volunteer work or help your
+ neighbour paint the house.
+ 5. Don't waste. Anything, but specially energy that comes from natural
+ non-renewable resources. Extra points if you discover or invent something
+ to replace them.
+ 6. Be tolerant. Everything that's good in nature comes from cooperation.
+
Added: packages-metadata/u/umegaya.upstream
===================================================================
--- packages-metadata/u/umegaya.upstream (rev 0)
+++ packages-metadata/u/umegaya.upstream 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,4 @@
+Archive: Alioth
+Contact: Charles Plessy <plessy at debian.org>
+Name: Umegaya
+Homepage: http://umegaya.branchable.com
Added: packages-metadata/v/visionegg.control
===================================================================
--- packages-metadata/v/visionegg.control (rev 0)
+++ packages-metadata/v/visionegg.control 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,26 @@
+Source: visionegg
+Section: python
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Thorsten Alteholz <debian at alteholz.de>
+Build-Depends: debhelper (>= 9),
+ python-all-dev (>=2.6),
+ python-setuptools,
+ python-numpy,
+ python-imaging,
+ python-opengl,
+ python-pygame,
+ mesa-common-dev,
+ libgl1-mesa-dev
+Standards-Version: 3.9.4
+Homepage: http://www.visionegg.org
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/visionegg/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/visionegg/trunk/
+
+Package: python-visionegg
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}, libgl1-mesa-glx
+Description: Python library for 2D/3D visual stimulus generation
+ The Vision Egg is a programming library that uses standard, inexpensive
+ computer graphics cards to produce visual stimuli for vision research
+ experiments.
Added: packages-metadata/v/visionegg.copyright
===================================================================
--- packages-metadata/v/visionegg.copyright (rev 0)
+++ packages-metadata/v/visionegg.copyright 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,85 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: visionegg
+Source: http://www.visionegg.org
+
+Files: *
+Copyright: 2001-2003 Andrew Straw
+ 2004-2008 California Institute of Technology
+License: LGPL 2.1
+ This library is free software; you can redistribute it and/or
+ modify it under the terms of the GNU Lesser General Public
+ License as published by the Free Software Foundation; either
+ version 2.1 of the License, or (at your option) any later version.
+ .
+ This library is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+ Lesser General Public License for more details.
+ .
+ You should have received a copy of the GNU Lesser General Public
+ License along with this library; if not, write to the Free Software
+ Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA.
+ .
+ On Debian systems, the complete text of the GNU Lesser General
+ Public License version 2.1 can be found in "/usr/share/common-licenses/LGPL-2".
+
+Files: VisionEgg/DaqKeyboard.py
+ VisionEgg/ResponseControl.py
+ demo/demo_fixationpoint.py
+ demo/demo_keyboardresponse.py
+ demo/demo_keyboardtrigger.py
+Copyright: 2005 Hubertus Becker, Hertie Institute for Clinical Brain Research,
+ Department of Cognitive Neurology, University of Tuebingen
+License: LGPL 2.1
+ see above
+
+Files: VisoinEgg/MoreStimuli.py
+Copyright: 2001-2003 Andrew Straw.
+ 2005 by Hertie Institute for Clinical Brain Research,
+ Department of Cognitive Neurology, University of Tuebingen
+ 2005,2008 California Institute of Technology
+ 2006 Peter Jurica and Gijs Plomp
+License: LGPL 2.1
+ see above
+
+Files: VisoinEgg/WrappedText.py
+Copyright: 2007 Eamon Caddigan, University of Illinois
+License: LGPL 2.1
+ see above
+
+Files: doc/flames_pygames.py
+Copyright: 2001 Pete Shinners
+ 2003 Andrew Straw
+License: LGPL 2.1
+ see above
+
+Files: VisionEgg/PyroApps/AST_ext.py
+ VisionEgg/PyroApps/DropinGUI.py
+ VisionEgg/PyroApps/DropinServer.py
+ VisionEgg/PyroApps/EPhysGUI.py
+ VisionEgg/PyroApps/EPhysServer.py
+ VisionEgg/PyroApps/VarTypes.py
+Copyright: 2004 Imran S. Ali, Lachlan Dowd
+License: LGPL 2.1
+ see above
+
+Files: VisionEgg/win32_vretrace_orig.h
+Copyright: Thiadmer Riemersma
+License: Creative Commons Attribution-Share Alike 3.0 Unported
+ THE WORK (AS DEFINED BELOW) IS PROVIDED UNDER THE TERMS OF THIS CREATIVE
+ COMMONS PUBLIC LICENSE ("CCPL" OR "LICENSE"). THE WORK IS PROTECTED BY
+ COPYRIGHT AND/OR OTHER APPLICABLE LAW. ANY USE OF THE WORK OTHER THAN AS
+ AUTHORIZED UNDER THIS LICENSE OR COPYRIGHT LAW IS PROHIBITED.
+ .
+ BY EXERCISING ANY RIGHTS TO THE WORK PROVIDED HERE, YOU ACCEPT AND AGREE
+ TO BE BOUND BY THE TERMS OF THIS LICENSE. TO THE EXTENT THIS LICENSE MAY
+ BE CONSIDERED TO BE A CONTRACT, THE LICENSOR GRANTS YOU THE RIGHTS CONTAINED
+ HERE IN CONSIDERATION OF YOUR ACCEPTANCE OF SUCH TERMS AND CONDITIONS.
+ .
+ The complete license can be found at:
+ http://creativecommons.org/licenses/by-sa/3.0/legalcode
+
+Files: debian/*
+Copyright: 2013 Thorsten Alteholz <debian at alteholz.de>
+License: LGPL 2.1
+ see above
Added: packages-metadata/v/visionegg.upstream
===================================================================
--- packages-metadata/v/visionegg.upstream (rev 0)
+++ packages-metadata/v/visionegg.upstream 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,9 @@
+Reference:
+ Author: Andrew D. Straw
+ Title: "Vision Egg: An Open-Source Library for Realtime Visual Stimulus Generation"
+ Journal: Frontiers in Neuroinformatics
+ Year: 2008
+ Volume: 2
+ Number: 4
+ DOI: 10.3389/neuro.11.004.2008
+ URL: http://frontiersin.org/neuroinformatics/paper/10.3389/neuro.11/004.2008/
Added: packages-metadata/y/yorick.control
===================================================================
--- packages-metadata/y/yorick.control (rev 0)
+++ packages-metadata/y/yorick.control 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,195 @@
+Source: yorick
+Section: science
+Priority: extra
+Maintainer: Debian Science Maintainers <debian-science-maintainers at lists.alioth.debian.org>
+Uploaders: Thibaut Paumard <paumard at users.sourceforge.net>
+Build-Depends: libx11-dev, texinfo, debhelper (>= 7.0.0), quilt (>= 0.40),
+ imagemagick, po-debconf, texi2html (>= 1.82), libmpich2-dev,
+ libopenmpi-dev [alpha amd64 armel armhf hurd-i386 i386 ia64 kfreebsd-amd64 kfreebsd-i386 powerpc powerpcspe ppc64 sparc sparc64]
+Standards-Version: 3.9.3
+DM-Upload-Allowed: yes
+Vcs-Git: git://git.debian.org/git/debian-science/packages/yorick.git
+Vcs-Browser: http://git.debian.org/?p=debian-science/packages/yorick.git
+Homepage: http://yorick.sourceforge.net
+
+Package: yorick
+Architecture: any
+Depends: yorick-data (= ${source:Version}), ${shlibs:Depends}, ${misc:Depends}, debconf
+Replaces: yorick-data (<< 2.1.04+dfsg-1)
+Conflicts: yorick-yutils (<= 1.5.0)
+Breaks: yorick-imutil (<< 0.5.4-2~), yorick-spydr (<< 0.8.0-2~),
+ yorick-curses (<< 0.1-4~)
+Recommends: rlwrap, yorick-z
+Suggests: yorick-full, yorick-dbg, yorick-mpy-openmpi | yorick-mpy-mpich2,
+ emacsen, curl
+Description: interpreted language and scientific graphics
+ Yorick is an interpreted programming language for:
+ * scientific simulations or calculations
+ * postprocessing or steering large simulation codes
+ * interactive scientific graphics
+ * reading, writing, and translating large files of numbers
+ .
+ The language features a compact syntax for many common array
+ operations, so it processes large arrays of numbers very quickly and
+ efficiently. Superficially, yorick code resembles C code, but yorick
+ variables are never explicitly declared and have a dynamic scoping
+ similar to many Lisp dialects. The yorick language is designed to be
+ typed interactively at a keyboard, as well as stored in files for
+ later use.
+ .
+ This package includes an emacs-based development environment, which
+ you can launch by typing M-x yorick in emacs.
+ .
+ Many add-on packages and plug-ins are available for Yorick (the
+ package names begin with "yorick-"). You may want to install the
+ yorick-full metapackage which depends on the vast majority of them.
+
+Package: yorick-dbg
+Section: debug
+Architecture: any
+Depends: yorick (= ${binary:Version}), ${misc:Depends}
+Description: debugging symbols for Yorick
+ Yorick is an interpreted programming language for:
+ * scientific simulations or calculations
+ * postprocessing or steering large simulation codes
+ * interactive scientific graphics
+ * reading, writing, and translating large files of numbers
+ .
+ This package contains the debugging symbols for the yorick
+ executable.
+
+Package: yorick-data
+Architecture: all
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Recommends: yorick (>= ${source:Version})
+Description: interpreted library for the Yorick language
+ Yorick is an interpreted programming language for:
+ * scientific simulations or calculations
+ * postprocessing or steering large simulation codes
+ * interactive scientific graphics
+ * reading, writing, and translating large files of numbers
+ .
+ The yorick-data package contains all the architecture-independent data, which
+ is mostly the standard interpreted library.
+
+Package: yorick-dev
+Architecture: any
+Depends: yorick (= ${binary:Version}), ${shlibs:Depends}, ${misc:Depends}
+Description: development files for the Yorick interpreted language
+ Yorick is an interpreted programming language for:
+ * scientific simulations or calculations
+ * postprocessing or steering large simulation codes
+ * interactive scientific graphics
+ * reading, writing, and translating large files of numbers
+ .
+ The yorick-dev package contains the files needed to compile (or package)
+ plug-ins or custom `yorick' executables.
+
+Package: yorick-mpy-mpich2
+Architecture: any
+Depends: yorick (= ${binary:Version}), yorick-mpy-common (= ${source:Version}),
+ mpich2, ${shlibs:Depends}, ${misc:Depends}
+Description: Message Passing Yorick (MPICH2 build)
+ Yorick is an interpreted programming language for:
+ * scientific simulations or calculations
+ * postprocessing or steering large simulation codes
+ * interactive scientific graphics
+ * reading, writing, and translating large files of numbers
+ .
+ The MPY is a parallel version of Yorick based on the Message Passing
+ Interface (MPI). This package contains a build of MPY linked against
+ MPICH2.
+
+Package: yorick-mpy-openmpi
+Architecture: alpha amd64 armel armhf hurd-i386 i386 ia64 kfreebsd-amd64 kfreebsd-i386 powerpc powerpcspe ppc64 sparc sparc64
+Depends: yorick (= ${binary:Version}), yorick-mpy-common (= ${source:Version}),
+ openmpi-bin, ${shlibs:Depends}, ${misc:Depends}
+Description: Message Passing Yorick (OpenMPI build)
+ Yorick is an interpreted programming language for:
+ * scientific simulations or calculations
+ * postprocessing or steering large simulation codes
+ * interactive scientific graphics
+ * reading, writing, and translating large files of numbers
+ .
+ The MPY is a parallel version of Yorick based on the Message Passing
+ Interface (MPI). This package contains a build of MPY linked against
+ OpenMPI.
+
+Package: yorick-mpy-common
+Architecture: all
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Recommends: yorick-mpy-openmpi (>= ${source:Version}) | yorick-mpy-mpich2 (>= ${source:Version})
+Description: Message Passing Yorick (common files)
+ Yorick is an interpreted programming language for:
+ * scientific simulations or calculations
+ * postprocessing or steering large simulation codes
+ * interactive scientific graphics
+ * reading, writing, and translating large files of numbers
+ .
+ The MPY is a parallel version of Yorick based on the Message Passing
+ Interface (MPI). This package contains the files common to all
+ builds of MPY.
+
+Package: yorick-doc
+Section: doc
+Architecture: all
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Recommends: yorick (>= 2.1.04+dfsg+cvs20071130)
+Description: documentation for the Yorick interpreted language
+ Yorick is an interpreted programming language for:
+ * scientific simulations or calculations
+ * postprocessing or steering large simulation codes
+ * interactive scientific graphics
+ * reading, writing, and translating large files of numbers
+ .
+ The Yorick package ships with little documentation: a manpage, the
+ Yorick Manual in info format, and its own "help" command. This
+ package adds the Yorick Manual and Quick Reference in PDF and HTML
+ format and a utility (update-yorickdoc) to build HTML documentation
+ for the set of functions (from Yorick and add-on packages) installed
+ on this machine. By default, these pages are built and updated
+ automatically whenever necessary.
+ .
+ Once this package is installed, simply point your preferred web
+ browser to file:///usr/share/doc/yorick-doc/README.html .
+
+Package: yorick-full
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends},
+ yorick, yorick-dev, yorick-doc,
+ yorick-av [!ia64 !mips !mipsel !s390 !s390x !sparc],
+ yorick-cubeview,
+ yorick-curses,
+ yorick-gl,
+ yorick-hdf5,
+ yorick-imutil,
+ yorick-mira,
+ yorick-ml4,
+ yorick-mpeg,
+ yorick-optimpack,
+ yorick-soy,
+ yorick-spydr,
+ yorick-yao,
+ yorick-yeti,
+ yorick-yeti-fftw,
+ yorick-yeti-gsl,
+ yorick-yeti-regex,
+ yorick-yeti-tiff,
+ yorick-yutils,
+ yorick-z
+Suggests: yorick-mpy-openmpi | yorick-mpy-mpich2, yorick-svipc, yorick-gyoto
+Description: full installation of the Yorick interpreter and add-ons
+ Yorick is an interpreted programming language for:
+ * scientific simulations or calculations
+ * postprocessing or steering large simulation codes
+ * interactive scientific graphics
+ * reading, writing, and translating large files of numbers
+ .
+ The yorick-full metapackage installs Yorick together with the full set
+ of add-ons packaged for Debian.
+ .
+ You may prefer to only install the yorick package and cherry-pick the
+ yorick-* add-ons you need.
+ .
+ If you need MPY, the MPI parallel version of Yorick, please install
+ either yorick-mpy-openmpi or yorick-mpy-mpich2 in addition.
Added: packages-metadata/y/yorick.copyright
===================================================================
--- packages-metadata/y/yorick.copyright (rev 0)
+++ packages-metadata/y/yorick.copyright 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,142 @@
+Format: http://svn.debian.org/wsvn/dep/web/deps/dep5.mdwn?op=file
+Upstream-Name: Yorick
+Upstream-Contact: David H. Munro <dhmunro at users.sourceforge.net>
+Source: http://yorick.sourceforge.net/
+
+Files: *
+Copyright: 1989, 1993-1995, 2005-2011, The Regents of the University of California.
+License: BSD
+
+Files: emacs/yorick.el
+Copyright: 2000, David H. Munro
+License: GPL-2+
+
+Files: i/fits.i
+Copyright: 2000-2008, Éric Thiébaut <thiebaut at obs.univ-lyon1.fr>
+License: GPL-2+
+
+Files: doc/refs.tex
+Copyright: 1987, Free Software Foundation, Inc.
+ 1995, Regents of the University of California
+License: GPL-1+
+
+Files: debian/* distribs/debian/*
+Copyright: 2006-2011 Thibaut Paumard <paumard at users.sourceforge.com>
+License: GPL-2+
+
+Files: regexp/yregexp.c
+Copyright: 1986, University of Toronto
+License: other
+ Written by Henry Spencer. Not derived from licensed software.
+ .
+ Permission is granted to anyone to use this software for any
+ purpose on any computer system, and to redistribute it freely,
+ subject to the following restrictions:
+ .
+ 1. The author is not responsible for the consequences of use of
+ this software, no matter how awful, even if they arise
+ from defects in it.
+ .
+ 2. The origin of this software must not be misrepresented, either
+ by explicit claim or by omission.
+ .
+ 3. Altered versions must be plainly marked as such, and must not
+ be misrepresented as being the original software.
+ .
+ Beware that some of this code is subtly aware of the way operator
+ precedence is structured in regular expressions. Serious changes in
+ regular-expression syntax might require a total rethink.
+
+License: BSD
+ BSD License
+ .
+ Copyright (c) 2005, The Regents of the University of California.
+ Produced at the Lawrence Livermore National Laboratory.
+ Written by David H. Munro <dhmunro at users.sourceforge.net>.
+ UCRL-CODE-155996
+ All rights reserved.
+ .
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions are
+ met:
+ .
+ * Redistributions of source code must retain the above copyright
+ notice, this list of conditions and the disclaimer below.
+ .
+ * Redistributions in binary form must reproduce the above copyright
+ notice, this list of conditions and the disclaimer (as noted below)
+ in the documentation and/or other materials provided with the
+ distribution.
+ .
+ * Neither the name of the UC/LLNL nor the names of its contributors
+ may be used to endorse or promote products derived from this software
+ without specific prior written permission.
+ .
+ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+ "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
+ LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
+ A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OF
+ THE UNIVERSITY OF CALIFORNIA, THE U.S. DEPARTMENT OF ENERGY OR
+ CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
+ EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
+ PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
+ PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
+ LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
+ NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+ SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+ .
+ .
+ .
+ .
+ Additional BSD Notice
+ .
+ 1. This notice is required to be provided under our contract with the
+ U.S. Department of Energy (DOE). This work was produced at the
+ University of California, Lawrence Livermore National Laboratory under
+ Contract No. W-7405-ENG-48 with the DOE.
+ .
+ 2. Neither the United States Government nor the University of
+ California nor any of their employees, makes any warranty, express or
+ implied, or assumes any liability or responsibility for the accuracy,
+ completeness, or usefulness of any information, apparatus, product, or
+ process disclosed, or represents that its use would not infringe
+ privately-owned rights.
+ .
+ 3. Also, reference herein to any specific commercial products,
+ process, or services by trade name, trademark, manufacturer or
+ otherwise does not necessarily constitute or imply its endorsement,
+ recommendation, or favoring by the United States Government or the
+ University of California. The views and opinions of authors expressed
+ herein do not necessarily state or reflect those of the United States
+ Government or the University of California, and shall not be used for
+ advertising or product endorsement purposes.
+
+License: GPL-1+
+ Permission is granted to make and distribute copies of
+ this card provided the copyright notice and this permission notice
+ are preserved on all copies.
+ .
+ On Debian systems, the GPL (v. 2) can be found in
+ /usr/share/common-licenses/GPL-2
+
+License: GPL-2+
+ This program is free software; you can redistribute it
+ and/or modify it under the terms of the GNU General Public
+ License as published by the Free Software Foundation; either
+ version 2 of the License, or (at your option) any later
+ version.
+ .
+ This program is distributed in the hope that it will be
+ useful, but WITHOUT ANY WARRANTY; without even the implied
+ warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ PURPOSE. See the GNU General Public License for more
+ details.
+ .
+ You should have received a copy of the GNU General Public
+ License along with this package; if not, write to the Free
+ Software Foundation, Inc., 51 Franklin St, Fifth Floor,
+ Boston, MA 02110-1301 USA
+ .
+ On Debian systems, the full text of the GNU General Public
+ License version 2 can be found in the file
+ `/usr/share/common-licenses/GPL-2'.
Added: packages-metadata/z/zalign.control
===================================================================
--- packages-metadata/z/zalign.control (rev 0)
+++ packages-metadata/z/zalign.control 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,27 @@
+Source: zalign
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Steffen Moeller <moeller at debian.org>,
+ Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 9), autotools-dev, libopenmpi-dev, dh-autoreconf
+Standards-Version: 3.9.4
+Homepage: https://launchpad.net/zalign
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/zalign/trunk/
+Vcs-Browser: http://anonscm.debian.org/viewvc/debian-med/trunk/packages/zalign/trunk
+
+Package: zalign
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: parallel local alignment of biological sequences
+ zAlign is a local sequence aligner, especially intended for use with
+ large biological DNA sequences, with more than 1Mbp (Millions of base
+ pairs). It uses the Smith-Waterman exact algorithm with affine gap cost
+ function to perform this task.
+ .
+ zAlign can be used both in distributed (clusters, for
+ example) or standalone environments. Currently it has
+ been tested on Linux and Sun Solaris, using both the MPICH
+ (http://www.mcs.anl.gov/research/projects/mpi/mpich1/) and OpenMPI
+ (http://www.open-mpi.org/) implementations. Ports for other Unix-like
+ environments are highly considered.
Added: packages-metadata/z/zalign.copyright
===================================================================
--- packages-metadata/z/zalign.copyright (rev 0)
+++ packages-metadata/z/zalign.copyright 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,31 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: zalign
+Source: https://launchpad.net/zalign
+
+Files: *
+Copyright: 2006-2009 Rodolfo Bezerra Batista <rodolfo.batista at gmail.com>
+ 2006-2009 Felipe Brant Scarel <fbscarel at gmail.com>
+License: GPL-3.0+
+
+Files: debian/*
+Copyright: 2012 Steffen Moeller <moeller at debian.org>
+ 2013 Andreas Tille <tille at debian.org>
+License: GPL-3.0+
+
+License: GPL-3.0+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+ .
+ On Debian systems, the complete text of the GNU General
+ Public License version 3 can be found in "/usr/share/common-licenses/GPL-3".
+
Added: packages-metadata/z/zalign.upstream
===================================================================
--- packages-metadata/z/zalign.upstream (rev 0)
+++ packages-metadata/z/zalign.upstream 2013-04-27 04:09:26 UTC (rev 2660)
@@ -0,0 +1,11 @@
+Reference:
+ Author: Rodolfo Bezerra Batista and Azzedine Boukerche and Alba Cristina Magalhaes Alves de Melo
+ Title: A parallel strategy for biological sequence alignment in restricted memory space
+ Journal: Journal of Parallel and Distributed Computing
+ Year: 2008
+ Volume: 68
+ Number: 4
+ Pages: 548--561
+ DOI: 10.1016/j.jpdc.2007.08.007
+ URL: http://www.sciencedirect.com/science/article/pii/S0743731507001530
+ issn: 0743-7315
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