[med-svn] r110 - in trunk/packages/sigma-align/trunk/debian: . lintian-override

[Charles Plessy]

Author: charles-guest
Date: 2006-09-16 05:51:12 +0000 (Sat, 16 Sep 2006)
New Revision: 110

Added:
   trunk/packages/sigma-align/trunk/debian/lintian-override/
   trunk/packages/sigma-align/trunk/debian/lintian-override/sigma-align
Removed:
   trunk/packages/sigma-align/trunk/debian/dirs
Modified:
   trunk/packages/sigma-align/trunk/debian/rules
   trunk/packages/sigma-align/trunk/debian/sigma.1.xml
Log:
Cleaning and adding a temporary lintian override


Deleted: trunk/packages/sigma-align/trunk/debian/dirs
===================================================================
--- trunk/packages/sigma-align/trunk/debian/dirs	2006-09-14 02:32:00 UTC (rev 109)
+++ trunk/packages/sigma-align/trunk/debian/dirs	2006-09-16 05:51:12 UTC (rev 110)
@@ -1 +0,0 @@
-usr/bin

Added: trunk/packages/sigma-align/trunk/debian/lintian-override/sigma-align
===================================================================
--- trunk/packages/sigma-align/trunk/debian/lintian-override/sigma-align	                        (rev 0)
+++ trunk/packages/sigma-align/trunk/debian/lintian-override/sigma-align	2006-09-16 05:51:12 UTC (rev 110)
@@ -0,0 +1 @@
+sigma-align: unstripped-binary-or-object ./usr/bin/sigma

Modified: trunk/packages/sigma-align/trunk/debian/rules
===================================================================
--- trunk/packages/sigma-align/trunk/debian/rules	2006-09-14 02:32:00 UTC (rev 109)
+++ trunk/packages/sigma-align/trunk/debian/rules	2006-09-16 05:51:12 UTC (rev 110)
@@ -11,15 +11,18 @@
 
 configure:
 
-build: 
+build: sigma debian/sigma.1
+
+sigma:
 	dh_testdir
 	if [ -x /usr/bin/ocamlopt ]; then \
 		ocamlopt str.cmxa sigma.ml -o sigma ; \
 	else \
 		ocamlc str.cma sigma.ml -o sigma ; \
 	fi
+
+debian/sigma.1:	debian/sigma.1.xml
 	xsltproc -o debian/ -''-nonet /usr/share/xml/docbook/stylesheet/nwalsh/manpages/docbook.xsl debian/sigma.1.xml
-	touch build
 
 clean:
 	dh_testdir
@@ -31,17 +34,19 @@
 	dh_testdir
 	dh_testroot
 	dh_clean -k 
-	dh_installdirs
+	dh_installdirs /usr/bin
 
 binary-indep:
 
-binary-arch: build install
+binary-arch: install
 	dh_testdir
 	dh_testroot
 	dh_installdocs sigma.ml
 	dh_install sigma usr/bin
 	dh_installman debian/sigma.1
 	dh_installchangelogs
+	mkdir -p debian/sigma-align/usr/share/lintian/overrides/
+	cp debian/lintian-override/sigma-align debian/sigma-align/usr/share/lintian/overrides/
 	dh_link
 #	dh_strip
 	dh_compress

Modified: trunk/packages/sigma-align/trunk/debian/sigma.1.xml
===================================================================
--- trunk/packages/sigma-align/trunk/debian/sigma.1.xml	2006-09-14 02:32:00 UTC (rev 109)
+++ trunk/packages/sigma-align/trunk/debian/sigma.1.xml	2006-09-16 05:51:12 UTC (rev 110)
@@ -101,7 +101,7 @@
         <term><option>-F</option>
         </term>
         <listitem>
-          <para>fasta output (can use both <option>-A</option> and <option>-F</option> in either order)</para>
+          <para>Fasta output (can use both <option>-A</option> and <option>-F</option> in either order).</para>
         </listitem>
       </varlistentry>
 
@@ -111,7 +111,7 @@
         </term>
         <listitem>
           <para>Background correlation (default <parameter>2</parameter>=dinucleotide;
-     <parameter>1</parameter>=single-site basecounts, <parameter>0</parameter>=0.25 per base)</para>
+     <parameter>1</parameter>=single-site basecounts, <parameter>0</parameter>=0.25 per base).</para>
         </listitem>
       </varlistentry>
             
@@ -121,7 +121,7 @@
         </term>
         <listitem>
           <para>Set limit for how probable the match is by chance
-     (default 0.002, smaller=more stringent)</para>
+     (default 0.002, smaller=more stringent).</para>
         </listitem>
       </varlistentry>
       
@@ -150,7 +150,7 @@
     <para>This manual page was written by &dhusername; &dhemail; for
       the &debian; system (but may be used by others).  Permission is
       granted to copy, distribute and/or modify this document under
-      the terms of the &gnu; General Public License, Version 2 any 
+      the terms of the &gnu; General Public License, Version 2 or any 
 	  later version published by the Free Software Foundation.
     </para>