[med-svn] r744 - in trunk/packages/bioimagesuite/trunk: . debian debian/old debian/patches
hanska-guest at alioth.debian.org
hanska-guest at alioth.debian.org
Thu Nov 1 10:53:50 UTC 2007
Author: hanska-guest
Date: 2007-11-01 10:53:50 +0000 (Thu, 01 Nov 2007)
New Revision: 744
Added:
trunk/packages/bioimagesuite/trunk/debian/
trunk/packages/bioimagesuite/trunk/debian/bioimagesuite-data.dirs
trunk/packages/bioimagesuite/trunk/debian/bioimagesuite-data.install
trunk/packages/bioimagesuite/trunk/debian/bioimagesuite.dirs
trunk/packages/bioimagesuite/trunk/debian/bioimagesuite.examples
trunk/packages/bioimagesuite/trunk/debian/bioimagesuite.install
trunk/packages/bioimagesuite/trunk/debian/bioimagesuite.links
trunk/packages/bioimagesuite/trunk/debian/bioimagesuite.lintian-override
trunk/packages/bioimagesuite/trunk/debian/bioimagesuite.menu
trunk/packages/bioimagesuite/trunk/debian/changelog
trunk/packages/bioimagesuite/trunk/debian/compat
trunk/packages/bioimagesuite/trunk/debian/control
trunk/packages/bioimagesuite/trunk/debian/copyright
trunk/packages/bioimagesuite/trunk/debian/libbioimagesuite2.dirs
trunk/packages/bioimagesuite/trunk/debian/libbioimagesuite2.install
trunk/packages/bioimagesuite/trunk/debian/libbioimagesuite2.lintian-override
trunk/packages/bioimagesuite/trunk/debian/libbioimagesuite2.postinst
trunk/packages/bioimagesuite/trunk/debian/libbioimagesuite2.shlibs.local
trunk/packages/bioimagesuite/trunk/debian/old/
trunk/packages/bioimagesuite/trunk/debian/old/README.Debian
trunk/packages/bioimagesuite/trunk/debian/old/bioimagesuite-default.ex
trunk/packages/bioimagesuite/trunk/debian/old/bioimagesuite-dev.dirs
trunk/packages/bioimagesuite/trunk/debian/old/bioimagesuite-dev.install
trunk/packages/bioimagesuite/trunk/debian/old/bioimagesuite.doc-base.EX
trunk/packages/bioimagesuite/trunk/debian/old/control.old
trunk/packages/bioimagesuite/trunk/debian/old/libbioimagesuite-dev.install
trunk/packages/bioimagesuite/trunk/debian/old/manpage.1.ex
trunk/packages/bioimagesuite/trunk/debian/old/manpage.sgml.ex
trunk/packages/bioimagesuite/trunk/debian/old/manpage.xml.ex
trunk/packages/bioimagesuite/trunk/debian/old/postinst.ex
trunk/packages/bioimagesuite/trunk/debian/old/postrm.ex
trunk/packages/bioimagesuite/trunk/debian/old/preinst.ex
trunk/packages/bioimagesuite/trunk/debian/old/prerm.ex
trunk/packages/bioimagesuite/trunk/debian/patches/
trunk/packages/bioimagesuite/trunk/debian/patches/edit_paths.patch
trunk/packages/bioimagesuite/trunk/debian/patches/series
trunk/packages/bioimagesuite/trunk/debian/rules
Log:
[svn-inject] Applying Debian modifications to trunk
Property changes on: trunk/packages/bioimagesuite/trunk/debian
___________________________________________________________________
Name: mergeWithUpstream
+ 1
Added: trunk/packages/bioimagesuite/trunk/debian/bioimagesuite-data.dirs
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/bioimagesuite-data.dirs (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/bioimagesuite-data.dirs 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1 @@
+usr/share/bioimagesuite/
Added: trunk/packages/bioimagesuite/trunk/debian/bioimagesuite-data.install
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/bioimagesuite-data.install (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/bioimagesuite-data.install 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1 @@
+images/ usr/share/bioimagesuite/
Added: trunk/packages/bioimagesuite/trunk/debian/bioimagesuite.dirs
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/bioimagesuite.dirs (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/bioimagesuite.dirs 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1,3 @@
+usr/bin
+usr/share/bioimagesuite
+usr/share/lintian
Added: trunk/packages/bioimagesuite/trunk/debian/bioimagesuite.examples
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/bioimagesuite.examples (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/bioimagesuite.examples 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1 @@
+example/*
Added: trunk/packages/bioimagesuite/trunk/debian/bioimagesuite.install
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/bioimagesuite.install (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/bioimagesuite.install 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1,12 @@
+apps/ usr/lib/bioimagesuite/
+base/ usr/lib/bioimagesuite/
+datatree/ usr/lib/bioimagesuite/
+#lib/ usr/lib/bioimagesuite/
+main/ usr/lib/bioimagesuite/
+mjack/ usr/lib/bioimagesuite/
+
+setpaths.sh usr/lib/bioimagesuite/
+surfaceeditor usr/lib/bioimagesuite/
+setpaths.csh usr/lib/bioimagesuite/
+
+start_bioimagesuite usr/lib/bioimagesuite/
Added: trunk/packages/bioimagesuite/trunk/debian/bioimagesuite.links
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/bioimagesuite.links (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/bioimagesuite.links 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1 @@
+usr/lib/bioimagesuite/start_bioimagesuite usr/bin/bioimagesuite
Added: trunk/packages/bioimagesuite/trunk/debian/bioimagesuite.lintian-override
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/bioimagesuite.lintian-override (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/bioimagesuite.lintian-override 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1,2 @@
+bioimagesuite: shell-script-fails-syntax-check ./usr/lib/bioimagesuite/datatree/packages/ImageDialog.tcl
+bioimagesuite: shell-script-fails-syntax-check ./usr/lib/bioimagesuite/datatree/packages/chellyDB.tcl
Added: trunk/packages/bioimagesuite/trunk/debian/bioimagesuite.menu
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/bioimagesuite.menu (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/bioimagesuite.menu 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1,5 @@
+?package(bioimagesuite):\
+ needs="X11" \
+ section="Applications/Science/Medicine" \
+ title="BioImageSuite" \
+ command="/usr/bin/bioimagesuite"
Added: trunk/packages/bioimagesuite/trunk/debian/changelog
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/changelog (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/changelog 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1,6 @@
+bioimagesuite (2.0-1) unstable; urgency=low
+
+ * Initial release
+
+ -- David Paleino <d.paleino at gmail.com> Fri, 26 Oct 2007 22:12:21 +0200
+
Added: trunk/packages/bioimagesuite/trunk/debian/compat
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/compat (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/compat 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1 @@
+5
Added: trunk/packages/bioimagesuite/trunk/debian/control
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/control (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/control 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1,66 @@
+Source: bioimagesuite
+Section: science
+Priority: optional
+Maintainer: David Paleino <d.paleino at gmail.com>
+Build-Depends: debhelper (>= 5), quilt
+Standards-Version: 3.7.2
+Homepage: http://www.bioimagesuite.org
+
+Package: bioimagesuite
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}, itk3.1, vtk-tcl, libmetakit-tcl,
+ tcllib, iwidgets4, itcl3.1, libminc0, bioimagesuite-data, libxerces28,
+ minc-tools, hdf5-tools, netcdf-bin, libbioimagesuite2
+Description: integrated image analysis suite
+ BioImage Suite is an integrated image analysis software suite developed at
+ Yale University.
+ .
+ BioImage Suite has been published as:
+ X. Papademetris, M. Jackowski, N. Rajeevan, H. Okuda, R.T. Constable, and L.H
+ Staib. BioImage Suite: An integrated medical image analysis suite,
+ Section of Bioimaging Sciences, Dept. of Diagnostic Radiology, Yale
+ School of Medicine. http://www.bioimagesuite.org .
+
+Package: bioimagesuite-data
+Architecture: all
+Description: integrated image analysis suite - common data files
+ BioImage Suite is an integrated image analysis software suite developed at
+ Yale University.
+ .
+ BioImage Suite has been published as:
+ X. Papademetris, M. Jackowski, N. Rajeevan, H. Okuda, R.T. Constable, and L.H
+ Staib. BioImage Suite: An integrated medical image analysis suite,
+ Section of Bioimaging Sciences, Dept. of Diagnostic Radiology, Yale
+ School of Medicine. http://www.bioimagesuite.org .
+ .
+ This package contains architecture-independent data files.
+
+Package: libbioimagesuite2
+Architecture: any
+Section: libs
+Depends: ${shlibs:Depends}
+Description: integrated image analysis suite - library files
+ BioImage Suite is an integrated image analysis software suite developed at
+ Yale University.
+ .
+ BioImage Suite has been published as:
+ X. Papademetris, M. Jackowski, N. Rajeevan, H. Okuda, R.T. Constable, and L.H
+ Staib. BioImage Suite: An integrated medical image analysis suite,
+ Section of Bioimaging Sciences, Dept. of Diagnostic Radiology, Yale
+ School of Medicine. http://www.bioimagesuite.org .
+ .
+ This package contains library files.
+
+#Package: libbioimagesuite2-dev
+#Architecture: any
+#Description: integrated image analysis suite - library header files
+# BioImage Suite is an integrated image analysis software suite developed at
+# Yale University.
+# .
+# BioImage Suite has been published as:
+# X. Papademetris, M. Jackowski, N. Rajeevan, H. Okuda, R.T. Constable, and L.H
+# Staib. BioImage Suite: An integrated medical image analysis suite,
+# Section of Bioimaging Sciences, Dept. of Diagnostic Radiology, Yale
+# School of Medicine. http://www.bioimagesuite.org .
+# .
+# This package contains library header files.
Added: trunk/packages/bioimagesuite/trunk/debian/copyright
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/copyright (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/copyright 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1,43 @@
+This package was debianized by David Paleino <d.paleino at gmail.com> on
+Fri, 26 Oct 2007 22:12:21 +0200.
+
+It was downloaded from http://www.bioimagesuite.org
+
+Upstream Authors:
+
+ X. Papademetris, M. Jackowski, N. Rajeevan, H. Okuda, R.T. Constable, and L.H
+ Staib. BioImage Suite: An integrated medical image analysis suite,
+ Section of Bioimaging Sciences, Dept. of Diagnostic Radiology, Yale
+ School of Medicine. http://www.bioimagesuite.org .
+
+Copyright:
+
+ X. Papademetris
+ M. Jackowski
+ N. Rajeevan
+ H. Okuda
+ R.T. Constable
+ L.H. Staib
+ Section of Bioimaging Sciences, Dept. of Diagnostic Radiology, Yale School of Medicine
+
+License:
+
+ This package is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this package; if not, write to the Free Software
+ Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+
+On Debian systems, the complete text of the GNU General
+Public License can be found in `/usr/share/common-licenses/GPL'.
+
+The Debian packaging is (C) 2007, David Paleino <d.paleino at gmail.com> and
+is licensed under the GPL, see above.
Added: trunk/packages/bioimagesuite/trunk/debian/libbioimagesuite2.dirs
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/libbioimagesuite2.dirs (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/libbioimagesuite2.dirs 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1,2 @@
+usr/lib/
+usr/share/lintian/
Added: trunk/packages/bioimagesuite/trunk/debian/libbioimagesuite2.install
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/libbioimagesuite2.install (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/libbioimagesuite2.install 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1 @@
+lib/* usr/lib/
Added: trunk/packages/bioimagesuite/trunk/debian/libbioimagesuite2.lintian-override
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/libbioimagesuite2.lintian-override (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/libbioimagesuite2.lintian-override 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1,33 @@
+libbioimagesuite2: several-sonames-in-same-package libvtkmpjCommonTCL.so libvtkmpjDiffusionTCL.so libvtkmpjGraphicsTCL.so libvtkmpjLevelsetTCL.so libvtknrCommonTCL.so libvtknrGraphicsTCL.so libvtknrImagingTCL.so libvtknrNmrlibTCL.so libvtkpxClosedTCL.so libvtkpxCommonTCL.so libvtkpxGUITCL.so libvtkpxGraphicsTCL.so libvtkpxImagingTCL.so libvtkpxLegacyTCL.so libvtkpxLevelsetTCL.so libvtkpxNmrlibTCL.so libvtkpxRegistrationTCL.so libvtkpxSegmentationTCL.so
+
+libbioimagesuite2: package-name-doesnt-match-sonames libvtkmpjCommonTCL libvtkmpjDiffusionTCL libvtkmpjGraphicsTCL libvtkmpjLevelsetTCL libvtknrCommonTCL libvtknrGraphicsTCL libvtknrImagingTCL libvtknrNmrlibTCL libvtkpxClosedTCL libvtkpxCommonTCL libvtkpxGUITCL libvtkpxGraphicsTCL libvtkpxImagingTCL libvtkpxLegacyTCL libvtkpxLevelsetTCL libvtkpxNmrlibTCL libvtkpxRegistrationTCL libvtkpxSegmentationTCL
+
+libbioimagesuite2: no-shlibs-control-file usr/lib/libvtknrCommonTCL.so
+libbioimagesuite2: no-shlibs-control-file usr/lib/libvtkpxLevelsetTCL.so
+libbioimagesuite2: no-shlibs-control-file usr/lib/libvtkpxLegacyTCL.so
+libbioimagesuite2: no-shlibs-control-file usr/lib/libvtkmpjCommonTCL.so
+libbioimagesuite2: no-shlibs-control-file usr/lib/libvtkmpjDiffusionTCL.so
+libbioimagesuite2: no-shlibs-control-file usr/lib/libvtknrNmrlibTCL.so
+libbioimagesuite2: no-shlibs-control-file usr/lib/libvtkpxNmrlibTCL.so
+libbioimagesuite2: no-shlibs-control-file usr/lib/libvtknrGraphicsTCL.so
+libbioimagesuite2: no-shlibs-control-file usr/lib/libvtkpxImagingTCL.so
+libbioimagesuite2: no-shlibs-control-file usr/lib/libvtkpxCommonTCL.so
+libbioimagesuite2: no-shlibs-control-file usr/lib/libvtkpxSegmentationTCL.so
+libbioimagesuite2: no-shlibs-control-file usr/lib/libvtkpxRegistrationTCL.so
+libbioimagesuite2: no-shlibs-control-file usr/lib/libvtkpxClosedTCL.so
+libbioimagesuite2: no-shlibs-control-file usr/lib/libvtkpxGraphicsTCL.so
+libbioimagesuite2: no-shlibs-control-file usr/lib/libvtkmpjGraphicsTCL.so
+libbioimagesuite2: no-shlibs-control-file usr/lib/libvtkmpjLevelsetTCL.so
+libbioimagesuite2: no-shlibs-control-file usr/lib/libvtkpxGUITCL.so
+libbioimagesuite2: no-shlibs-control-file usr/lib/libvtknrImagingTCL.so
+
+libbioimagesuite2: shlib-with-non-pic-code usr/lib/libvtknrCommonTCL.so
+libbioimagesuite2: shlib-with-non-pic-code usr/lib/libvtkpxClosedTCL.so
+libbioimagesuite2: shlib-with-non-pic-code usr/lib/libvtknrNmrlibTCL.so
+libbioimagesuite2: shlib-with-non-pic-code usr/lib/libvtkpxNmrlibTCL.so
+libbioimagesuite2: shlib-with-non-pic-code usr/lib/libvtkpxCommonTCL.so
+libbioimagesuite2: shlib-with-non-pic-code usr/lib/libvtkpxRegistrationTCL.so
+libbioimagesuite2: shlib-with-non-pic-code usr/lib/libvtkpxGUITCL.so
+
+libbioimagesuite2: shlib-with-executable-stack usr/lib/libvtkpxClosedTCL.so
+libbioimagesuite2: shlib-with-executable-stack usr/lib/libvtkpxCommonTCL.so
Added: trunk/packages/bioimagesuite/trunk/debian/libbioimagesuite2.postinst
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/libbioimagesuite2.postinst (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/libbioimagesuite2.postinst 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1,26 @@
+#!/bin/sh
+# postinst script for bioimagesuite
+#
+# see: dh_installdeb(1)
+
+set -e
+
+case "$1" in
+ configure)
+ if [ -x /sbin/ldconfig ]
+ then
+ /sbin/ldconfig
+ fi
+ ;;
+
+ *)
+ echo "postinst called with unknown argument \`$1'" >&2
+ exit 1
+ ;;
+esac
+
+#DEBHELPER#
+
+exit 0
+
+
Added: trunk/packages/bioimagesuite/trunk/debian/libbioimagesuite2.shlibs.local
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/libbioimagesuite2.shlibs.local (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/libbioimagesuite2.shlibs.local 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1,19 @@
+#libbioimagesuite2 2 bioimagesuite (>= 2.0-1)
+libvtkmpjCommonTCL 2 libbioimagesuite2 (>= 2.0-1)
+libvtkmpjDiffusionTCL 2 libbioimagesuite2 (>= 2.0-1)
+libvtkmpjGraphicsTCL 2 libbioimagesuite2 (>= 2.0-1)
+libvtkmpjLevelsetTCL 2 libbioimagesuite2 (>= 2.0-1)
+libvtknrCommonTCL 2 libbioimagesuite2 (>= 2.0-1)
+libvtknrGraphicsTCL 2 libbioimagesuite2 (>= 2.0-1)
+libvtknrImagingTCL 2 libbioimagesuite2 (>= 2.0-1)
+libvtknrNmrlibTCL 2 libbioimagesuite2 (>= 2.0-1)
+libvtkpxClosedTCL 2 libbioimagesuite2 (>= 2.0-1)
+libvtkpxCommonTCL 2 libbioimagesuite2 (>= 2.0-1)
+libvtkpxGUITCL 2 libbioimagesuite2 (>= 2.0-1)
+libvtkpxGraphicsTCL 2 libbioimagesuite2 (>= 2.0-1)
+libvtkpxImagingTCL 2 libbioimagesuite2 (>= 2.0-1)
+libvtkpxLegacyTCL 2 libbioimagesuite2 (>= 2.0-1)
+libvtkpxLevelsetTCL 2 libbioimagesuite2 (>= 2.0-1)
+libvtkpxNmrlibTCL 2 libbioimagesuite2 (>= 2.0-1)
+libvtkpxRegistrationTCL 2 libbioimagesuite2 (>= 2.0-1)
+libvtkpxSegmentationTCL 2 libbioimagesuite2 (>= 2.0-1)
Added: trunk/packages/bioimagesuite/trunk/debian/old/README.Debian
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/old/README.Debian (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/old/README.Debian 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1,6 @@
+bioimagesuite for Debian
+------------------------
+
+<possible notes regarding this package - if none, delete this file>
+
+ -- David Paleino <d.paleino at gmail.com> Fri, 26 Oct 2007 22:12:21 +0200
Added: trunk/packages/bioimagesuite/trunk/debian/old/bioimagesuite-default.ex
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/old/bioimagesuite-default.ex (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/old/bioimagesuite-default.ex 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1,10 @@
+# Defaults for bioimagesuite initscript
+# sourced by /etc/init.d/bioimagesuite
+# installed at /etc/default/bioimagesuite by the maintainer scripts
+
+#
+# This is a POSIX shell fragment
+#
+
+# Additional options that are passed to the Daemon.
+DAEMON_OPTS=""
Added: trunk/packages/bioimagesuite/trunk/debian/old/bioimagesuite-dev.dirs
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/old/bioimagesuite-dev.dirs (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/old/bioimagesuite-dev.dirs 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1 @@
+usr/include/bioimagesuite
Added: trunk/packages/bioimagesuite/trunk/debian/old/bioimagesuite-dev.install
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/old/bioimagesuite-dev.install (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/old/bioimagesuite-dev.install 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1 @@
+include/* usr/include/bioimagesuite/
Added: trunk/packages/bioimagesuite/trunk/debian/old/bioimagesuite.doc-base.EX
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/old/bioimagesuite.doc-base.EX (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/old/bioimagesuite.doc-base.EX 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1,22 @@
+Document: bioimagesuite
+Title: Debian bioimagesuite Manual
+Author: <insert document author here>
+Abstract: This manual describes what bioimagesuite is
+ and how it can be used to
+ manage online manuals on Debian systems.
+Section: unknown
+
+Format: debiandoc-sgml
+Files: /usr/share/doc/bioimagesuite/bioimagesuite.sgml.gz
+
+Format: postscript
+Files: /usr/share/doc/bioimagesuite/bioimagesuite.ps.gz
+
+Format: text
+Files: /usr/share/doc/bioimagesuite/bioimagesuite.text.gz
+
+Format: HTML
+Index: /usr/share/doc/bioimagesuite/html/index.html
+Files: /usr/share/doc/bioimagesuite/html/*.html
+
+
Added: trunk/packages/bioimagesuite/trunk/debian/old/control.old
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/old/control.old (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/old/control.old 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1,63 @@
+Source: bioimagesuite
+Section: science
+Priority: optional
+Maintainer: David Paleino <d.paleino at gmail.com>
+Build-Depends: debhelper (>= 5)
+Standards-Version: 3.7.2
+Homepage: http://www.bioimagesuite.org
+
+Package: bioimagesuite
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}, itk3.1, libvtk5, libmetakit-tcl,
+ tcllib, iwidgets4, itcl3.1, libminc0, bioimagesuite-dev
+Description: integrated image analysis suite
+ BioImage Suite is an integrated image analysis software suite developed at
+ Yale University.
+ .
+ BioImage Suite has been published as:
+ X. Papademetris, M. Jackowski, N. Rajeevan, H. Okuda, R.T. Constable, and L.H
+ Staib. BioImage Suite: An integrated medical image analysis suite,
+ Section of Bioimaging Sciences, Dept. of Diagnostic Radiology, Yale
+ School of Medicine. http://www.bioimagesuite.org .
+
+Package: bioimagesuite-dev
+Architecture: any
+Description: integrated image analysis suite - development headers
+ BioImage Suite is an integrated image analysis software suite developed at
+ Yale University.
+ .
+ BioImage Suite has been published as:
+ X. Papademetris, M. Jackowski, N. Rajeevan, H. Okuda, R.T. Constable, and L.H
+ Staib. BioImage Suite: An integrated medical image analysis suite,
+ Section of Bioimaging Sciences, Dept. of Diagnostic Radiology, Yale
+ School of Medicine. http://www.bioimagesuite.org .
+ .
+ This package contains the development header files.
+
+Package: bioimagesuite-data
+Architecture: all
+Description: integrated image analysis suite - common data files
+ BioImage Suite is an integrated image analysis software suite developed at
+ Yale University.
+ .
+ BioImage Suite has been published as:
+ X. Papademetris, M. Jackowski, N. Rajeevan, H. Okuda, R.T. Constable, and L.H
+ Staib. BioImage Suite: An integrated medical image analysis suite,
+ Section of Bioimaging Sciences, Dept. of Diagnostic Radiology, Yale
+ School of Medicine. http://www.bioimagesuite.org .
+ .
+ This package contains architecture-independent data files.
+
+Package: bioimagesuite-libs
+Architecture: any
+Description: integrated image analysis suite - library files
+ BioImage Suite is an integrated image analysis software suite developed at
+ Yale University.
+ .
+ BioImage Suite has been published as:
+ X. Papademetris, M. Jackowski, N. Rajeevan, H. Okuda, R.T. Constable, and L.H
+ Staib. BioImage Suite: An integrated medical image analysis suite,
+ Section of Bioimaging Sciences, Dept. of Diagnostic Radiology, Yale
+ School of Medicine. http://www.bioimagesuite.org .
+ .
+ This package contains library files.
Added: trunk/packages/bioimagesuite/trunk/debian/old/libbioimagesuite-dev.install
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/old/libbioimagesuite-dev.install (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/old/libbioimagesuite-dev.install 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1 @@
+lib/*.a usr/lib/bioimagesuite/
Added: trunk/packages/bioimagesuite/trunk/debian/old/manpage.1.ex
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/old/manpage.1.ex (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/old/manpage.1.ex 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1,59 @@
+.\" Hey, EMACS: -*- nroff -*-
+.\" First parameter, NAME, should be all caps
+.\" Second parameter, SECTION, should be 1-8, maybe w/ subsection
+.\" other parameters are allowed: see man(7), man(1)
+.TH BIOIMAGESUITE SECTION "ottobre 26, 2007"
+.\" Please adjust this date whenever revising the manpage.
+.\"
+.\" Some roff macros, for reference:
+.\" .nh disable hyphenation
+.\" .hy enable hyphenation
+.\" .ad l left justify
+.\" .ad b justify to both left and right margins
+.\" .nf disable filling
+.\" .fi enable filling
+.\" .br insert line break
+.\" .sp <n> insert n+1 empty lines
+.\" for manpage-specific macros, see man(7)
+.SH NAME
+bioimagesuite \- program to do something
+.SH SYNOPSIS
+.B bioimagesuite
+.RI [ options ] " files" ...
+.br
+.B bar
+.RI [ options ] " files" ...
+.SH DESCRIPTION
+This manual page documents briefly the
+.B bioimagesuite
+and
+.B bar
+commands.
+.PP
+.\" TeX users may be more comfortable with the \fB<whatever>\fP and
+.\" \fI<whatever>\fP escape sequences to invode bold face and italics,
+.\" respectively.
+\fBbioimagesuite\fP is a program that...
+.SH OPTIONS
+These programs follow the usual GNU command line syntax, with long
+options starting with two dashes (`-').
+A summary of options is included below.
+For a complete description, see the Info files.
+.TP
+.B \-h, \-\-help
+Show summary of options.
+.TP
+.B \-v, \-\-version
+Show version of program.
+.SH SEE ALSO
+.BR bar (1),
+.BR baz (1).
+.br
+The programs are documented fully by
+.IR "The Rise and Fall of a Fooish Bar" ,
+available via the Info system.
+.SH AUTHOR
+bioimagesuite was written by <upstream author>.
+.PP
+This manual page was written by David Paleino <d.paleino at gmail.com>,
+for the Debian project (but may be used by others).
Added: trunk/packages/bioimagesuite/trunk/debian/old/manpage.sgml.ex
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/old/manpage.sgml.ex (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/old/manpage.sgml.ex 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1,156 @@
+<!doctype refentry PUBLIC "-//OASIS//DTD DocBook V4.1//EN" [
+
+<!-- Process this file with docbook-to-man to generate an nroff manual
+ page: `docbook-to-man manpage.sgml > manpage.1'. You may view
+ the manual page with: `docbook-to-man manpage.sgml | nroff -man |
+ less'. A typical entry in a Makefile or Makefile.am is:
+
+manpage.1: manpage.sgml
+ docbook-to-man $< > $@
+
+
+ The docbook-to-man binary is found in the docbook-to-man package.
+ Please remember that if you create the nroff version in one of the
+ debian/rules file targets (such as build), you will need to include
+ docbook-to-man in your Build-Depends control field.
+
+ -->
+
+ <!-- Fill in your name for FIRSTNAME and SURNAME. -->
+ <!ENTITY dhfirstname "<firstname>FIRSTNAME</firstname>">
+ <!ENTITY dhsurname "<surname>SURNAME</surname>">
+ <!-- Please adjust the date whenever revising the manpage. -->
+ <!ENTITY dhdate "<date>ottobre 26, 2007</date>">
+ <!-- SECTION should be 1-8, maybe w/ subsection other parameters are
+ allowed: see man(7), man(1). -->
+ <!ENTITY dhsection "<manvolnum>SECTION</manvolnum>">
+ <!ENTITY dhemail "<email>d.paleino at gmail.com</email>">
+ <!ENTITY dhusername "David Paleino">
+ <!ENTITY dhucpackage "<refentrytitle>BIOIMAGESUITE</refentrytitle>">
+ <!ENTITY dhpackage "bioimagesuite">
+
+ <!ENTITY debian "<productname>Debian</productname>">
+ <!ENTITY gnu "<acronym>GNU</acronym>">
+ <!ENTITY gpl "&gnu; <acronym>GPL</acronym>">
+]>
+
+<refentry>
+ <refentryinfo>
+ <address>
+ &dhemail;
+ </address>
+ <author>
+ &dhfirstname;
+ &dhsurname;
+ </author>
+ <copyright>
+ <year>2003</year>
+ <holder>&dhusername;</holder>
+ </copyright>
+ &dhdate;
+ </refentryinfo>
+ <refmeta>
+ &dhucpackage;
+
+ &dhsection;
+ </refmeta>
+ <refnamediv>
+ <refname>&dhpackage;</refname>
+
+ <refpurpose>program to do something</refpurpose>
+ </refnamediv>
+ <refsynopsisdiv>
+ <cmdsynopsis>
+ <command>&dhpackage;</command>
+
+ <arg><option>-e <replaceable>this</replaceable></option></arg>
+
+ <arg><option>--example <replaceable>that</replaceable></option></arg>
+ </cmdsynopsis>
+ </refsynopsisdiv>
+ <refsect1>
+ <title>DESCRIPTION</title>
+
+ <para>This manual page documents briefly the
+ <command>&dhpackage;</command> and <command>bar</command>
+ commands.</para>
+
+ <para>This manual page was written for the &debian; distribution
+ because the original program does not have a manual page.
+ Instead, it has documentation in the &gnu;
+ <application>Info</application> format; see below.</para>
+
+ <para><command>&dhpackage;</command> is a program that...</para>
+
+ </refsect1>
+ <refsect1>
+ <title>OPTIONS</title>
+
+ <para>These programs follow the usual &gnu; command line syntax,
+ with long options starting with two dashes (`-'). A summary of
+ options is included below. For a complete description, see the
+ <application>Info</application> files.</para>
+
+ <variablelist>
+ <varlistentry>
+ <term><option>-h</option>
+ <option>--help</option>
+ </term>
+ <listitem>
+ <para>Show summary of options.</para>
+ </listitem>
+ </varlistentry>
+ <varlistentry>
+ <term><option>-v</option>
+ <option>--version</option>
+ </term>
+ <listitem>
+ <para>Show version of program.</para>
+ </listitem>
+ </varlistentry>
+ </variablelist>
+ </refsect1>
+ <refsect1>
+ <title>SEE ALSO</title>
+
+ <para>bar (1), baz (1).</para>
+
+ <para>The programs are documented fully by <citetitle>The Rise and
+ Fall of a Fooish Bar</citetitle> available via the
+ <application>Info</application> system.</para>
+ </refsect1>
+ <refsect1>
+ <title>AUTHOR</title>
+
+ <para>This manual page was written by &dhusername; &dhemail; for
+ the &debian; system (but may be used by others). Permission is
+ granted to copy, distribute and/or modify this document under
+ the terms of the &gnu; General Public License, Version 2 any
+ later version published by the Free Software Foundation.
+ </para>
+ <para>
+ On Debian systems, the complete text of the GNU General Public
+ License can be found in /usr/share/common-licenses/GPL.
+ </para>
+
+ </refsect1>
+</refentry>
+
+<!-- Keep this comment at the end of the file
+Local variables:
+mode: sgml
+sgml-omittag:t
+sgml-shorttag:t
+sgml-minimize-attributes:nil
+sgml-always-quote-attributes:t
+sgml-indent-step:2
+sgml-indent-data:t
+sgml-parent-document:nil
+sgml-default-dtd-file:nil
+sgml-exposed-tags:nil
+sgml-local-catalogs:nil
+sgml-local-ecat-files:nil
+End:
+-->
+
+
Added: trunk/packages/bioimagesuite/trunk/debian/old/manpage.xml.ex
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/old/manpage.xml.ex (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/old/manpage.xml.ex 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1,144 @@
+<?xml version='1.0' encoding='ISO-8859-1'?>
+<!DOCTYPE refentry PUBLIC "-//OASIS//DTD DocBook XML V4.2//EN"
+"http://www.oasis-open.org/docbook/xml/4.2/docbookx.dtd" [
+
+<!--
+
+Process this file with an XSLT processor: `xsltproc \
+-''-nonet /usr/share/sgml/docbook/stylesheet/xsl/nwalsh/\
+manpages/docbook.xsl manpage.dbk'. A manual page
+<package>.<section> will be generated. You may view the
+manual page with: nroff -man <package>.<section> | less'. A
+typical entry in a Makefile or Makefile.am is:
+
+DB2MAN=/usr/share/sgml/docbook/stylesheet/xsl/nwalsh/\
+manpages/docbook.xsl
+XP=xsltproc -''-nonet
+
+manpage.1: manpage.dbk
+ $(XP) $(DB2MAN) $<
+
+The xsltproc binary is found in the xsltproc package. The
+XSL files are in docbook-xsl. Please remember that if you
+create the nroff version in one of the debian/rules file
+targets (such as build), you will need to include xsltproc
+and docbook-xsl in your Build-Depends control field.
+
+-->
+
+ <!-- Fill in your name for FIRSTNAME and SURNAME. -->
+ <!ENTITY dhfirstname "<firstname>FIRSTNAME</firstname>">
+ <!ENTITY dhsurname "<surname>SURNAME</surname>">
+ <!-- Please adjust the date whenever revising the manpage. -->
+ <!ENTITY dhdate "<date>ottobre 26, 2007</date>">
+ <!-- SECTION should be 1-8, maybe w/ subsection other parameters are
+ allowed: see man(7), man(1). -->
+ <!ENTITY dhsection "<manvolnum>SECTION</manvolnum>">
+ <!ENTITY dhemail "<email>d.paleino at gmail.com</email>">
+ <!ENTITY dhusername "David Paleino">
+ <!ENTITY dhucpackage "<refentrytitle>BIOIMAGESUITE</refentrytitle>">
+ <!ENTITY dhpackage "bioimagesuite">
+
+ <!ENTITY debian "<productname>Debian</productname>">
+ <!ENTITY gnu "<acronym>GNU</acronym>">
+ <!ENTITY gpl "&gnu; <acronym>GPL</acronym>">
+]>
+
+<refentry>
+ <refentryinfo>
+ <address>
+ &dhemail;
+ </address>
+ <copyright>
+ <year>2007</year>
+ <holder>&dhusername;</holder>
+ </copyright>
+ &dhdate;
+ </refentryinfo>
+ <refmeta>
+ &dhucpackage;
+
+ &dhsection;
+ </refmeta>
+ <refnamediv>
+ <refname>&dhpackage;</refname>
+
+ <refpurpose>program to do something</refpurpose>
+ </refnamediv>
+ <refsynopsisdiv>
+ <cmdsynopsis>
+ <command>&dhpackage;</command>
+
+ <arg><option>-e <replaceable>this</replaceable></option></arg>
+
+ <arg><option>--example <replaceable>that</replaceable></option></arg>
+ </cmdsynopsis>
+ </refsynopsisdiv>
+ <refsect1>
+ <title>DESCRIPTION</title>
+
+ <para>This manual page documents briefly the
+ <command>&dhpackage;</command> and <command>bar</command>
+ commands.</para>
+
+ <para>This manual page was written for the &debian; distribution
+ because the original program does not have a manual page.
+ Instead, it has documentation in the &gnu;
+ <application>Info</application> format; see below.</para>
+
+ <para><command>&dhpackage;</command> is a program that...</para>
+
+ </refsect1>
+ <refsect1>
+ <title>OPTIONS</title>
+
+ <para>These programs follow the usual &gnu; command line syntax,
+ with long options starting with two dashes (`-'). A summary of
+ options is included below. For a complete description, see the
+ <application>Info</application> files.</para>
+
+ <variablelist>
+ <varlistentry>
+ <term><option>-h</option>
+ <option>--help</option>
+ </term>
+ <listitem>
+ <para>Show summary of options.</para>
+ </listitem>
+ </varlistentry>
+ <varlistentry>
+ <term><option>-v</option>
+ <option>--version</option>
+ </term>
+ <listitem>
+ <para>Show version of program.</para>
+ </listitem>
+ </varlistentry>
+ </variablelist>
+ </refsect1>
+ <refsect1>
+ <title>SEE ALSO</title>
+
+ <para>bar (1), baz (1).</para>
+
+ <para>The programs are documented fully by <citetitle>The Rise and
+ Fall of a Fooish Bar</citetitle> available via the
+ <application>Info</application> system.</para>
+ </refsect1>
+ <refsect1>
+ <title>AUTHOR</title>
+
+ <para>This manual page was written by &dhusername; &dhemail; for
+ the &debian; system (but may be used by others). Permission is
+ granted to copy, distribute and/or modify this document under
+ the terms of the &gnu; General Public License, Version 2 any
+ later version published by the Free Software Foundation.
+ </para>
+ <para>
+ On Debian systems, the complete text of the GNU General Public
+ License can be found in /usr/share/common-licenses/GPL.
+ </para>
+
+ </refsect1>
+</refentry>
+
Added: trunk/packages/bioimagesuite/trunk/debian/old/postinst.ex
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/old/postinst.ex (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/old/postinst.ex 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1,41 @@
+#!/bin/sh
+# postinst script for bioimagesuite
+#
+# see: dh_installdeb(1)
+
+set -e
+
+# summary of how this script can be called:
+# * <postinst> `configure' <most-recently-configured-version>
+# * <old-postinst> `abort-upgrade' <new version>
+# * <conflictor's-postinst> `abort-remove' `in-favour' <package>
+# <new-version>
+# * <postinst> `abort-remove'
+# * <deconfigured's-postinst> `abort-deconfigure' `in-favour'
+# <failed-install-package> <version> `removing'
+# <conflicting-package> <version>
+# for details, see http://www.debian.org/doc/debian-policy/ or
+# the debian-policy package
+
+
+case "$1" in
+ configure)
+ ;;
+
+ abort-upgrade|abort-remove|abort-deconfigure)
+ ;;
+
+ *)
+ echo "postinst called with unknown argument \`$1'" >&2
+ exit 1
+ ;;
+esac
+
+# dh_installdeb will replace this with shell code automatically
+# generated by other debhelper scripts.
+
+#DEBHELPER#
+
+exit 0
+
+
Added: trunk/packages/bioimagesuite/trunk/debian/old/postrm.ex
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/old/postrm.ex (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/old/postrm.ex 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1,39 @@
+#!/bin/sh
+# postrm script for bioimagesuite
+#
+# see: dh_installdeb(1)
+
+set -e
+
+# summary of how this script can be called:
+# * <postrm> `remove'
+# * <postrm> `purge'
+# * <old-postrm> `upgrade' <new-version>
+# * <new-postrm> `failed-upgrade' <old-version>
+# * <new-postrm> `abort-install'
+# * <new-postrm> `abort-install' <old-version>
+# * <new-postrm> `abort-upgrade' <old-version>
+# * <disappearer's-postrm> `disappear' <overwriter>
+# <overwriter-version>
+# for details, see http://www.debian.org/doc/debian-policy/ or
+# the debian-policy package
+
+
+case "$1" in
+ purge|remove|upgrade|failed-upgrade|abort-install|abort-upgrade|disappear)
+ ;;
+
+ *)
+ echo "postrm called with unknown argument \`$1'" >&2
+ exit 1
+ ;;
+esac
+
+# dh_installdeb will replace this with shell code automatically
+# generated by other debhelper scripts.
+
+#DEBHELPER#
+
+exit 0
+
+
Added: trunk/packages/bioimagesuite/trunk/debian/old/preinst.ex
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/old/preinst.ex (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/old/preinst.ex 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1,37 @@
+#!/bin/sh
+# preinst script for bioimagesuite
+#
+# see: dh_installdeb(1)
+
+set -e
+
+# summary of how this script can be called:
+# * <new-preinst> `install'
+# * <new-preinst> `install' <old-version>
+# * <new-preinst> `upgrade' <old-version>
+# * <old-preinst> `abort-upgrade' <new-version>
+# for details, see http://www.debian.org/doc/debian-policy/ or
+# the debian-policy package
+
+
+case "$1" in
+ install|upgrade)
+ ;;
+
+ abort-upgrade)
+ ;;
+
+ *)
+ echo "preinst called with unknown argument \`$1'" >&2
+ exit 1
+ ;;
+esac
+
+# dh_installdeb will replace this with shell code automatically
+# generated by other debhelper scripts.
+
+#DEBHELPER#
+
+exit 0
+
+
Added: trunk/packages/bioimagesuite/trunk/debian/old/prerm.ex
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/old/prerm.ex (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/old/prerm.ex 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1,40 @@
+#!/bin/sh
+# prerm script for bioimagesuite
+#
+# see: dh_installdeb(1)
+
+set -e
+
+# summary of how this script can be called:
+# * <prerm> `remove'
+# * <old-prerm> `upgrade' <new-version>
+# * <new-prerm> `failed-upgrade' <old-version>
+# * <conflictor's-prerm> `remove' `in-favour' <package> <new-version>
+# * <deconfigured's-prerm> `deconfigure' `in-favour'
+# <package-being-installed> <version> `removing'
+# <conflicting-package> <version>
+# for details, see http://www.debian.org/doc/debian-policy/ or
+# the debian-policy package
+
+
+case "$1" in
+ remove|upgrade|deconfigure)
+ ;;
+
+ failed-upgrade)
+ ;;
+
+ *)
+ echo "prerm called with unknown argument \`$1'" >&2
+ exit 1
+ ;;
+esac
+
+# dh_installdeb will replace this with shell code automatically
+# generated by other debhelper scripts.
+
+#DEBHELPER#
+
+exit 0
+
+
Added: trunk/packages/bioimagesuite/trunk/debian/patches/edit_paths.patch
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/patches/edit_paths.patch (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/patches/edit_paths.patch 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1,76 @@
+Index: bioimagesuite/setpaths.csh
+===================================================================
+--- bioimagesuite.orig/setpaths.csh 2007-10-29 22:54:15.000000000 +0100
++++ bioimagesuite/setpaths.csh 2007-10-29 23:06:00.000000000 +0100
+@@ -1,23 +1,14 @@
++#!/bin/sh
+ #Script file to set paths for bioimagesuite
+
+ # Temp fix
+-setenv BASE /usr/local/bioimagesuite
++setenv BASE /usr/lib/bioimagesuite
+ setenv OS `uname`
+
+-if ( $OS == "Darwin") then
+- if (${?DISPLAY}) then
+- source /usr/local/vtk44_x11_yale/setvtk44.csh
+- else
+- source /usr/local/vtk44_carbon_yale/setvtk44.csh
+- endif
+-else
+- source /usr/local/vtk44_yale/setvtk44.csh
+-endif
++source /usr/local/vtk44_yale/setvtk44.csh
+
+ source /usr/local/itk241_yale/setitk241.csh
+
+-if (-r /usr/local/bioimagesuite_extra/setextra.csh ) source /usr/local/bioimagesuite_extra/setextra.csh
+-
+ setenv FSLDIR /usr/local/fsl
+ setenv FSLOUTPUTTYPE ANALYZE
+
+Index: bioimagesuite/setpaths.sh
+===================================================================
+--- bioimagesuite.orig/setpaths.sh 2007-10-29 22:54:15.000000000 +0100
++++ bioimagesuite/setpaths.sh 2007-10-29 22:56:07.000000000 +0100
+@@ -1,25 +1,14 @@
++#!/bin/sh
+ #Script file to set paths for bioimagesuite
+
+-BASE=/usr/local/bioimagesuite
++BASE=/usr/lib/bioimagesuite
+ OS=`uname`
+-if [ $OS == "Darwin" ]; then
+- if [ -n "$DISPLAY" ]; then
+- source /usr/local/vtk44_x11_yale/setvtk44.sh
+- else
+- source /usr/local/vtk44_carbon_yale/setvtk44.sh
+- fi
+-else
+- source /usr/local/vtk44_yale/setvtk44.sh
+-fi
+-
+
++source /usr/local/vtk44_yale/setvtk44.sh
+
+ source /usr/local/itk241_yale/setitk241.sh
+
+
+-if [ -r /usr/local/bioimagesuite_extra/setextra.sh ]; then
+- source /usr/local/bioimagesuite_extra/setextra.sh
+- fi
+
+
+ FSLDIR=/usr/local/fsl
+Index: bioimagesuite/start_bioimagesuite
+===================================================================
+--- bioimagesuite.orig/start_bioimagesuite 2007-10-29 22:54:15.000000000 +0100
++++ bioimagesuite/start_bioimagesuite 2007-10-29 22:56:07.000000000 +0100
+@@ -1,6 +1,5 @@
+ #!/bin/sh
+
+-BASE=/usr/local/bioimagesuite
++BASE=/usr/lib/bioimagesuite
+ source ${BASE}/setpaths.sh
+ pxmenu.tcl
+-
Added: trunk/packages/bioimagesuite/trunk/debian/patches/series
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/patches/series (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/patches/series 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1 @@
+edit_paths.patch
Added: trunk/packages/bioimagesuite/trunk/debian/rules
===================================================================
--- trunk/packages/bioimagesuite/trunk/debian/rules (rev 0)
+++ trunk/packages/bioimagesuite/trunk/debian/rules 2007-11-01 10:53:50 UTC (rev 744)
@@ -0,0 +1,59 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+include /usr/share/quilt/quilt.make
+
+build: patch build-stamp
+build-stamp:
+ dh_testdir
+ touch $@
+
+clean: unpatch
+ dh_testdir
+ dh_testroot
+
+ dh_clean build-stamp
+
+install: build
+ dh_testdir
+ dh_testroot
+ dh_clean -k
+ dh_installdirs
+ dh_install
+
+ # Removing RPATH...
+ chrpath -d $(CURDIR)/debian/libbioimagesuite2/usr/lib/*.so
+
+ # Fixing permissions...
+ chmod -R a-x $(CURDIR)/debian/bioimagesuite-data/usr/share/bioimagesuite/images/*
+
+binary-common: build install
+ dh_testdir
+ dh_testroot
+ dh_installchangelogs
+ dh_installdocs
+ dh_installexamples
+# dh_install
+ dh_installman
+ dh_link
+ dh_strip
+ dh_compress
+ dh_fixperms
+ dh_installdeb
+ dh_makeshlibs
+ # PLEASE FIX THIS:
+ # dpkg-shlibdeps: failure: couldn't find library libvtkCommonTCL.so
+ # (note: only packages with 'shlibs' files are looked into).
+ #dh_shlibdeps
+ dh_gencontrol
+ dh_md5sums
+ dh_builddeb
+
+binary-indep: binary-common
+binary-arch: binary-common
+
+binary: binary-indep binary-arch
+.PHONY: build clean binary-indep binary-arch binary install
Property changes on: trunk/packages/bioimagesuite/trunk/debian/rules
___________________________________________________________________
Name: svn:executable
+ *
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