[med-svn] r799 - in trunk/packages/glam2/trunk: . debian
smoe-guest at alioth.debian.org
smoe-guest at alioth.debian.org
Tue Nov 13 00:25:30 UTC 2007
Author: smoe-guest
Date: 2007-11-13 00:25:30 +0000 (Tue, 13 Nov 2007)
New Revision: 799
Added:
trunk/packages/glam2/trunk/debian/
trunk/packages/glam2/trunk/debian/README.Debian
trunk/packages/glam2/trunk/debian/changelog
trunk/packages/glam2/trunk/debian/compat
trunk/packages/glam2/trunk/debian/control
trunk/packages/glam2/trunk/debian/copyright
trunk/packages/glam2/trunk/debian/dirs
trunk/packages/glam2/trunk/debian/docs
trunk/packages/glam2/trunk/debian/glam2.1
trunk/packages/glam2/trunk/debian/glam2.install
trunk/packages/glam2/trunk/debian/rules
trunk/packages/glam2/trunk/debian/watch
Log:
[svn-inject] Applying Debian modifications to trunk
Property changes on: trunk/packages/glam2/trunk/debian
___________________________________________________________________
Name: mergeWithUpstream
+ 1
Added: trunk/packages/glam2/trunk/debian/README.Debian
===================================================================
--- trunk/packages/glam2/trunk/debian/README.Debian (rev 0)
+++ trunk/packages/glam2/trunk/debian/README.Debian 2007-11-13 00:25:30 UTC (rev 799)
@@ -0,0 +1,10 @@
+glam2 for Debian
+----------------
+
+This is a first shot at GLAM2 in order to have it in the archive. Several issues remain:
+
+ * No copyright information in the sources, the upstream author confirmed "public domain" status and it is also found here: http://bioinformatics.org.au/glam2/doc/
+ * man pages are missing
+ * doc-base entries still missing.
+
+ -- Steffen Moeller <moeller at debian.org> Tue, 13 Nov 2007 00:35:50 +0100
Added: trunk/packages/glam2/trunk/debian/changelog
===================================================================
--- trunk/packages/glam2/trunk/debian/changelog (rev 0)
+++ trunk/packages/glam2/trunk/debian/changelog 2007-11-13 00:25:30 UTC (rev 799)
@@ -0,0 +1,6 @@
+glam2 (1023-1) unstable; urgency=low
+
+ * Initial release (Closes: #nnnn) <nnnn is the bug number of your ITP>
+
+ -- Steffen Moeller <moeller at debian.org> Tue, 13 Nov 2007 00:35:50 +0100
+
Added: trunk/packages/glam2/trunk/debian/compat
===================================================================
--- trunk/packages/glam2/trunk/debian/compat (rev 0)
+++ trunk/packages/glam2/trunk/debian/compat 2007-11-13 00:25:30 UTC (rev 799)
@@ -0,0 +1 @@
+5
Added: trunk/packages/glam2/trunk/debian/control
===================================================================
--- trunk/packages/glam2/trunk/debian/control (rev 0)
+++ trunk/packages/glam2/trunk/debian/control 2007-11-13 00:25:30 UTC (rev 799)
@@ -0,0 +1,14 @@
+Source: glam2
+Section: science
+Priority: optional
+Maintainer: Steffen Moeller <moeller at debian.org>
+Build-Depends: debhelper (>= 5)
+Standards-Version: 3.7.2
+Homepage: http://bioinformatics.org.au/glam2/
+
+Package: glam2
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: gapped protein motifs from unaligned sequences
+ GLAM2 detects gapped motifs in unaligned sequences of
+ protein or DNA.
Added: trunk/packages/glam2/trunk/debian/copyright
===================================================================
--- trunk/packages/glam2/trunk/debian/copyright (rev 0)
+++ trunk/packages/glam2/trunk/debian/copyright 2007-11-13 00:25:30 UTC (rev 799)
@@ -0,0 +1,19 @@
+This package was debianized by Steffen Moeller <moeller at debian.org> on
+Tue, 13 Nov 2007 00:35:50 +0100.
+
+It was downloaded from http://bioinformatics.org.au/glam2/archive/
+
+Upstream Authors:
+
+ Martin C Frith <martin at cbrc.jp>
+ Timothy L Bailey <t.bailey at imb.uq.edu.au>
+
+Copyright:
+
+ Copyright (C) 2007 Martin C Frith
+ Copyright (C) 2007 Timothy L Bailey
+
+License:
+
+ The package is in the public domain and so shall then be
+ the packaging for Debian of Steffen Moeller <moeller at debian.org>.
Added: trunk/packages/glam2/trunk/debian/dirs
===================================================================
--- trunk/packages/glam2/trunk/debian/dirs (rev 0)
+++ trunk/packages/glam2/trunk/debian/dirs 2007-11-13 00:25:30 UTC (rev 799)
@@ -0,0 +1,2 @@
+usr/bin
+usr/sbin
Added: trunk/packages/glam2/trunk/debian/docs
===================================================================
--- trunk/packages/glam2/trunk/debian/docs (rev 0)
+++ trunk/packages/glam2/trunk/debian/docs 2007-11-13 00:25:30 UTC (rev 799)
@@ -0,0 +1,3 @@
+README
+doc/*.html
+doc/*.css
Added: trunk/packages/glam2/trunk/debian/glam2.1
===================================================================
--- trunk/packages/glam2/trunk/debian/glam2.1 (rev 0)
+++ trunk/packages/glam2/trunk/debian/glam2.1 2007-11-13 00:25:30 UTC (rev 799)
@@ -0,0 +1,65 @@
+.\" Hey, EMACS: -*- nroff -*-
+.\" First parameter, NAME, should be all caps
+.\" Second parameter, SECTION, should be 1-8, maybe w/ subsection
+.\" other parameters are allowed: see man(7), man(1)
+.TH GLAM2 1 "November 13, 2007"
+.\" Please adjust this date whenever revising the manpage.
+.\"
+.\" Some roff macros, for reference:
+.\" .nh disable hyphenation
+.\" .hy enable hyphenation
+.\" .ad l left justify
+.\" .ad b justify to both left and right margins
+.\" .nf disable filling
+.\" .fi enable filling
+.\" .br insert line break
+.\" .sp <n> insert n+1 empty lines
+.\" for manpage-specific macros, see man(7)
+.SH NAME
+glam2 \- detects gapped motifs in unaligned biological sequences
+.SH SYNOPSIS
+.B glam2
+.RI [ options ] " files" ...
+.br
+.B glam2format
+.RI [ options ] " files" ...
+.br
+.B glam2mask
+.RI [ options ] " files" ...
+.br
+.B glam2scan
+.RI [ options ] " files" ...
+.SH DESCRIPTION
+This manual page documents briefly the
+.B glam2
+and
+.B bar
+commands.
+.PP
+.\" TeX users may be more comfortable with the \fB<whatever>\fP and
+.\" \fI<whatever>\fP escape sequences to invode bold face and italics,
+.\" respectively.
+\fBglam2\fP is a program that...
+.SH OPTIONS
+These programs follow the usual GNU command line syntax, with long
+options starting with two dashes (`-').
+A summary of options is included below.
+For a complete description, see the Info files.
+.TP
+.B \-h, \-\-help
+Show summary of options.
+.TP
+.B \-v, \-\-version
+Show version of program.
+.SH SEE ALSO
+.BR bar (1),
+.BR baz (1).
+.br
+The programs are documented fully by
+.IR "The Rise and Fall of a Fooish Bar" ,
+available via the Info system.
+.SH AUTHOR
+glam2 was written by <upstream author>.
+.PP
+This manual page was written by Steffen Moeller <moeller at debian.org>,
+for the Debian project (but may be used by others).
Added: trunk/packages/glam2/trunk/debian/glam2.install
===================================================================
--- trunk/packages/glam2/trunk/debian/glam2.install (rev 0)
+++ trunk/packages/glam2/trunk/debian/glam2.install 2007-11-13 00:25:30 UTC (rev 799)
@@ -0,0 +1,4 @@
+src/glam2format /usr/bin/
+src/glam2mask /usr/bin/
+src/glam2scan /usr/bin/
+src/glam2 /usr/bin/
Added: trunk/packages/glam2/trunk/debian/rules
===================================================================
--- trunk/packages/glam2/trunk/debian/rules (rev 0)
+++ trunk/packages/glam2/trunk/debian/rules 2007-11-13 00:25:30 UTC (rev 799)
@@ -0,0 +1,53 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+# Sample debian/rules that uses debhelper.
+# This file was originally written by Joey Hess and Craig Small.
+# As a special exception, when this file is copied by dh-make into a
+# dh-make output file, you may use that output file without restriction.
+# This special exception was added by Craig Small in version 0.37 of dh-make.
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+
+build: build-stamp
+
+build-stamp:
+ dh_testdir
+ $(MAKE) -C src
+ #(cd debian; for i in glam2format.1 glam2mask.1 glam2scan.1; do ln -s glam2.1 $$i; done)
+ touch $@
+
+clean:
+ dh_testdir
+ dh_testroot
+ rm -f build-stamp configure-stamp
+
+ dh_clean src/*.o src/{glam2,glam2mask,glam2format,glam2scan}
+
+install: build
+
+binary-indep: build install
+
+binary-arch: build install
+ dh_testdir
+ dh_testroot
+ dh_installchangelogs ChangeLog
+ dh_installdocs
+ dh_installexamples examples/*
+ dh_install
+ for i in format scan mask; do \
+ dh_link /usr/share/man/man1/glam2.1.gz /usr/share/man/man1/glam2$$i.1.gz; \
+ done
+ dh_installman debian/glam2.1
+ dh_strip
+ dh_compress
+ dh_fixperms
+ dh_installdeb
+ dh_shlibdeps
+ dh_gencontrol
+ dh_md5sums
+ dh_builddeb
+
+binary: binary-indep binary-arch
+.PHONY: build clean binary-indep binary-arch binary install configure
Property changes on: trunk/packages/glam2/trunk/debian/rules
___________________________________________________________________
Name: svn:executable
+ *
Added: trunk/packages/glam2/trunk/debian/watch
===================================================================
--- trunk/packages/glam2/trunk/debian/watch (rev 0)
+++ trunk/packages/glam2/trunk/debian/watch 2007-11-13 00:25:30 UTC (rev 799)
@@ -0,0 +1,2 @@
+version=3
+http://bioinformatics.org.au/glam2/archive/glam2-(\d+)\.zip
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