[med-svn] r438 - in trunk/packages/libbioperl-run-perl/trunk: . Bio/Installer debian debian/patches
smoe-guest at alioth.debian.org
smoe-guest at alioth.debian.org
Wed Sep 19 14:04:40 UTC 2007
Author: smoe-guest
Date: 2007-09-19 14:04:39 +0000 (Wed, 19 Sep 2007)
New Revision: 438
Added:
trunk/packages/libbioperl-run-perl/trunk/debian/
trunk/packages/libbioperl-run-perl/trunk/debian/README.Debian
trunk/packages/libbioperl-run-perl/trunk/debian/changelog
trunk/packages/libbioperl-run-perl/trunk/debian/compat
trunk/packages/libbioperl-run-perl/trunk/debian/control
trunk/packages/libbioperl-run-perl/trunk/debian/copyright
trunk/packages/libbioperl-run-perl/trunk/debian/patches/
trunk/packages/libbioperl-run-perl/trunk/debian/patches/perlpath.patch
trunk/packages/libbioperl-run-perl/trunk/debian/patches/series
trunk/packages/libbioperl-run-perl/trunk/debian/rules
trunk/packages/libbioperl-run-perl/trunk/debian/watch
Modified:
trunk/packages/libbioperl-run-perl/trunk/Bio/Installer/Generic.pm
Log:
[svn-inject] Applying Debian modifications to trunk
Modified: trunk/packages/libbioperl-run-perl/trunk/Bio/Installer/Generic.pm
===================================================================
--- trunk/packages/libbioperl-run-perl/trunk/Bio/Installer/Generic.pm 2007-09-19 14:04:22 UTC (rev 437)
+++ trunk/packages/libbioperl-run-perl/trunk/Bio/Installer/Generic.pm 2007-09-19 14:04:39 UTC (rev 438)
@@ -1,4 +1,4 @@
-#!/usr/local/bin/perl
+#!/usr/bin/perl
# BioPerl module for Bio::Installer::Generic
#
Property changes on: trunk/packages/libbioperl-run-perl/trunk/debian
___________________________________________________________________
Name: mergeWithUpstream
+ 1
Added: trunk/packages/libbioperl-run-perl/trunk/debian/README.Debian
===================================================================
--- trunk/packages/libbioperl-run-perl/trunk/debian/README.Debian (rev 0)
+++ trunk/packages/libbioperl-run-perl/trunk/debian/README.Debian 2007-09-19 14:04:39 UTC (rev 438)
@@ -0,0 +1,7 @@
+This package addresses a first draft of something that shall
+accompany BioPerl. The packaging is not completed yet. Looming
+questions are for instance, if the libmodule-install-perl is
+required for installation/execution.
+
+Steffen
+
Added: trunk/packages/libbioperl-run-perl/trunk/debian/changelog
===================================================================
--- trunk/packages/libbioperl-run-perl/trunk/debian/changelog (rev 0)
+++ trunk/packages/libbioperl-run-perl/trunk/debian/changelog 2007-09-19 14:04:39 UTC (rev 438)
@@ -0,0 +1,5 @@
+libbioperl-run-perl (1.5.2.100-1) unstable; urgency=low
+
+ * Initial Release.
+
+ -- Steffen Moeller <moeller at debian.org> Wed, 19 Sep 2007 13:07:16 +0200
Added: trunk/packages/libbioperl-run-perl/trunk/debian/compat
===================================================================
--- trunk/packages/libbioperl-run-perl/trunk/debian/compat (rev 0)
+++ trunk/packages/libbioperl-run-perl/trunk/debian/compat 2007-09-19 14:04:39 UTC (rev 438)
@@ -0,0 +1 @@
+5
Added: trunk/packages/libbioperl-run-perl/trunk/debian/control
===================================================================
--- trunk/packages/libbioperl-run-perl/trunk/debian/control (rev 0)
+++ trunk/packages/libbioperl-run-perl/trunk/debian/control 2007-09-19 14:04:39 UTC (rev 438)
@@ -0,0 +1,19 @@
+Source: libbioperl-run-perl
+Section: perl
+Priority: optional
+Build-Depends: debhelper (>= 5.0.0), libmodule-build-perl
+Build-Depends-Indep: perl (>= 5.8.8-7), bioperl (>= 1.5.2-1)
+Maintainer: Steffen Moeller <moeller at debian.org>
+Standards-Version: 3.7.2
+
+Package: libbioperl-run-perl
+Architecture: all
+Depends: bioperl (>= 1.5.2-1)
+Suggests: clustalw,emboss,hmmer,mafft,muscle,primer3,t-coffee,wise
+Description: bioperl-run - wrapper toolkit
+ bioperl-run is toolkit of wrappers to interface common utilities
+ in bioinformatics from the BioPerl suite of commands.
+ .
+ Needed? libmodule-install-perl
+ .
+ Homepage: http://www.bioperl.org
Added: trunk/packages/libbioperl-run-perl/trunk/debian/copyright
===================================================================
--- trunk/packages/libbioperl-run-perl/trunk/debian/copyright (rev 0)
+++ trunk/packages/libbioperl-run-perl/trunk/debian/copyright 2007-09-19 14:04:39 UTC (rev 438)
@@ -0,0 +1,18 @@
+This is the debian package for the bioperl-run module.
+It was created by Steffen Moeller <moeller at debian.org> using dh-make-perl.
+
+It was downloaded from http://bioperl.org.
+
+The upstream author is: Bioperl Team <bioperl-l at bioperl.org>.
+
+This module is a free software.
+You may copy or redistribute it under the same terms as Perl itself.
+
+Perl is distributed under your choice of the GNU General Public License or
+the Artistic License. On Debian GNU/Linux systems, the complete text of the
+GNU General Public License can be found in `/usr/share/common-licenses/GPL'
+and the Artistic Licence in `/usr/share/common-licenses/Artistic'.
+
+
+The Debian packaging is (C) 2007, Steffen Moeller <moeller at debian.org> and
+is licensed under the same terms as the software itself (see above).
Added: trunk/packages/libbioperl-run-perl/trunk/debian/patches/perlpath.patch
===================================================================
--- trunk/packages/libbioperl-run-perl/trunk/debian/patches/perlpath.patch (rev 0)
+++ trunk/packages/libbioperl-run-perl/trunk/debian/patches/perlpath.patch 2007-09-19 14:04:39 UTC (rev 438)
@@ -0,0 +1,10 @@
+Index: libbioperl-run-perl-1.5.2.100/Bio/Installer/PAML.pm
+===================================================================
+--- libbioperl-run-perl-1.5.2.100.orig/Bio/Installer/PAML.pm 2007-09-19 15:56:04.013218569 +0200
++++ libbioperl-run-perl-1.5.2.100/Bio/Installer/PAML.pm 2007-09-19 15:56:07.321150725 +0200
+@@ -1,4 +1,4 @@
+-#!/usr/local/bin/perl
++#!/usr/bin/perl
+
+ # BioPerl module for Bio::Installer::PAML
+ #
Added: trunk/packages/libbioperl-run-perl/trunk/debian/patches/series
===================================================================
--- trunk/packages/libbioperl-run-perl/trunk/debian/patches/series (rev 0)
+++ trunk/packages/libbioperl-run-perl/trunk/debian/patches/series 2007-09-19 14:04:39 UTC (rev 438)
@@ -0,0 +1 @@
+perlpath.patch
Added: trunk/packages/libbioperl-run-perl/trunk/debian/rules
===================================================================
--- trunk/packages/libbioperl-run-perl/trunk/debian/rules (rev 0)
+++ trunk/packages/libbioperl-run-perl/trunk/debian/rules 2007-09-19 14:04:39 UTC (rev 438)
@@ -0,0 +1,79 @@
+#!/usr/bin/make -f
+# This debian/rules file is provided as a template for normal perl
+# packages. It was created by Marc Brockschmidt <marc at dch-faq.de> for
+# the Debian Perl Group (http://pkg-perl.alioth.debian.org/) but may
+# be used freely wherever it is useful.
+#
+# It was later modified by Jason Kohles <email at jasonkohles.com>
+# http://www.jasonkohles.com/ to support Module::Build installed modules
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+# If set to a true value then MakeMaker's prompt function will
+# always return the default without waiting for user input.
+export PERL_MM_USE_DEFAULT=1
+
+PACKAGE=$(shell dh_listpackages)
+
+ifndef PERL
+PERL = /usr/bin/perl
+endif
+
+include /usr/share/quilt/quilt.make
+
+TMP =$(CURDIR)/debian/$(PACKAGE)
+
+build: patch build-stamp
+build-stamp:
+ dh_testdir
+
+ # Add commands to compile the package here
+ $(PERL) Build.PL installdirs=vendor
+ $(PERL) Build
+ #$(PERL) Build test
+
+ touch build-stamp
+
+clean: unpatch
+ dh_testdir
+ dh_testroot
+
+ dh_clean build-stamp install-stamp
+
+ # Add commands to clean up after the build process here
+ [ ! -f Build ] || $(PERL) Build distclean
+
+install: build install-stamp
+install-stamp:
+ dh_testdir
+ dh_testroot
+ dh_clean -k
+
+ # Add commands to install the package into debian/$PACKAGE_NAME here
+ $(PERL) Build install destdir=$(TMP)
+
+ touch install-stamp
+
+binary-arch:
+# We have nothing to do here for an architecture-independent package
+
+binary-indep: build install
+ dh_testdir
+ dh_testroot
+ dh_installdocs
+ dh_installexamples
+ dh_installchangelogs
+ dh_perl
+ dh_compress
+ dh_fixperms
+ dh_installdeb
+ dh_gencontrol
+ dh_md5sums
+ dh_builddeb
+
+source diff:
+ @echo >&2 'source and diff are obsolete - use dpkg-source -b'; false
+
+binary: binary-indep binary-arch
+.PHONY: build clean binary-indep binary-arch binary
Property changes on: trunk/packages/libbioperl-run-perl/trunk/debian/rules
___________________________________________________________________
Name: svn:executable
+ *
Added: trunk/packages/libbioperl-run-perl/trunk/debian/watch
===================================================================
--- trunk/packages/libbioperl-run-perl/trunk/debian/watch (rev 0)
+++ trunk/packages/libbioperl-run-perl/trunk/debian/watch 2007-09-19 14:04:39 UTC (rev 438)
@@ -0,0 +1,2 @@
+version=3
+http://bioperl.org/DIST/bioperl-run-([0-9.]+)_?([0-9]+)?.tar.gz
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