[med-svn] r2400 - in trunk/packages/biococoa/trunk/debian: . patches
plessy at alioth.debian.org
plessy at alioth.debian.org
Fri Aug 8 04:48:10 UTC 2008
Author: plessy
Date: 2008-08-08 04:48:09 +0000 (Fri, 08 Aug 2008)
New Revision: 2400
Added:
trunk/packages/biococoa/trunk/debian/BioCocoa.1
trunk/packages/biococoa/trunk/debian/BioCocoa.desktop
Removed:
trunk/packages/biococoa/trunk/debian/SequenceConverter.1
trunk/packages/biococoa/trunk/debian/SequenceConverter.desktop
Modified:
trunk/packages/biococoa/trunk/debian/changelog
trunk/packages/biococoa/trunk/debian/control
trunk/packages/biococoa/trunk/debian/lintian-override
trunk/packages/biococoa/trunk/debian/manpages
trunk/packages/biococoa/trunk/debian/menu
trunk/packages/biococoa/trunk/debian/patches/01_plist.patch
trunk/packages/biococoa/trunk/debian/patches/03_GNUmakefile.patch
trunk/packages/biococoa/trunk/debian/rules
Log:
Temporarly reverted the renaming, so that a version in which only the
description is changed can make it to Lenny.
Copied: trunk/packages/biococoa/trunk/debian/BioCocoa.1 (from rev 2396, trunk/packages/biococoa/trunk/debian/BioCocoa.1)
===================================================================
--- trunk/packages/biococoa/trunk/debian/BioCocoa.1 (rev 0)
+++ trunk/packages/biococoa/trunk/debian/BioCocoa.1 2008-08-08 04:48:09 UTC (rev 2400)
@@ -0,0 +1,27 @@
+.TH BIOCOCOA 1 "December 21, 2004"
+.SH NAME
+BioCocoa \- Sequence file format conversion
+.SH SYNOPSIS
+.B BioCocoa
+.SH DESCRIPTION
+This manual page documents briefly the
+.B BioCocoa
+command.
+This manual page was written for the Debian distribution
+because the original program does not have a manual page.
+.PP
+\fBBioCocoa\fP provides developers with the opportunity to add
+support for reading and writing BEAST, Clustal, EMBL, Fasta, GCG-MSF, GDE,
+Hennig86, NCBI, NEXUS, NONA, PDB, Phylip, PIR, Plain/Raw, Swiss-Prot and
+TNT files by writing only three lines of code. The framework is written in
+Cocoa (Objective-C).
+.SH OPTIONS
+These programs follow the usual GNU command line syntax, with long
+options starting with two dashes (`-').
+A summary of options is included below.
+.SH SEE ALSO
+.BR GNUstep (7).
+.br
+.SH AUTHOR
+This manual page was written by G\[:u]rkan Seng\[:u]n <gurkan at linuks.mine.nu>,
+for the Debian project (but may be used by others).
Copied: trunk/packages/biococoa/trunk/debian/BioCocoa.desktop (from rev 2396, trunk/packages/biococoa/trunk/debian/BioCocoa.desktop)
===================================================================
--- trunk/packages/biococoa/trunk/debian/BioCocoa.desktop (rev 0)
+++ trunk/packages/biococoa/trunk/debian/BioCocoa.desktop 2008-08-08 04:48:09 UTC (rev 2400)
@@ -0,0 +1,8 @@
+[Desktop Entry]
+Type=Application
+Version=0.94
+Categories=Education;Science;Biology;
+Name=BioCocoa
+Comment=GNUstep BioCocoa
+Icon=/usr/lib/GNUstep/Applications/BioCocoa.app/Resources/biococoa.tiff
+Exec=BioCocoa
Deleted: trunk/packages/biococoa/trunk/debian/SequenceConverter.1
===================================================================
--- trunk/packages/biococoa/trunk/debian/SequenceConverter.1 2008-08-07 14:26:24 UTC (rev 2399)
+++ trunk/packages/biococoa/trunk/debian/SequenceConverter.1 2008-08-08 04:48:09 UTC (rev 2400)
@@ -1,27 +0,0 @@
-.TH SEQUENCECONVERTER 1 "December 21, 2004"
-.SH NAME
-SequenceConverter \- Sequence file format conversion
-.SH SYNOPSIS
-.B SequenceConverter
-.SH DESCRIPTION
-This manual page documents briefly the
-.B SequenceConverter
-command.
-This manual page was written for the Debian distribution
-because the original program does not have a manual page.
-.PP
-\fBSequenceConverter\fP provides developers with the opportunity to add
-support for reading and writing BEAST, Clustal, EMBL, Fasta, GCG-MSF, GDE,
-Hennig86, NCBI, NEXUS, NONA, PDB, Phylip, PIR, Plain/Raw, Swiss-Prot and
-TNT files by writing only three lines of code. The framework is written in
-Cocoa (Objective-C).
-.SH OPTIONS
-These programs follow the usual GNU command line syntax, with long
-options starting with two dashes (`-').
-A summary of options is included below.
-.SH SEE ALSO
-.BR GNUstep (7).
-.br
-.SH AUTHOR
-This manual page was written by G\[:u]rkan Seng\[:u]n <gurkan at linuks.mine.nu>,
-for the Debian project (but may be used by others).
Deleted: trunk/packages/biococoa/trunk/debian/SequenceConverter.desktop
===================================================================
--- trunk/packages/biococoa/trunk/debian/SequenceConverter.desktop 2008-08-07 14:26:24 UTC (rev 2399)
+++ trunk/packages/biococoa/trunk/debian/SequenceConverter.desktop 2008-08-08 04:48:09 UTC (rev 2400)
@@ -1,8 +0,0 @@
-[Desktop Entry]
-Type=Application
-Version=0.94
-Categories=Education;Science;Biology;
-Name=SequenceConverter
-Comment=GNUstep SequenceConverter
-Icon=/usr/lib/GNUstep/Applications/SequenceConverter.app/Resources/biococoa.tiff
-Exec=SequenceConverter
Modified: trunk/packages/biococoa/trunk/debian/changelog
===================================================================
--- trunk/packages/biococoa/trunk/debian/changelog 2008-08-07 14:26:24 UTC (rev 2399)
+++ trunk/packages/biococoa/trunk/debian/changelog 2008-08-08 04:48:09 UTC (rev 2400)
@@ -1,12 +1,11 @@
biococoa.app (1.6.0-8) unstable; urgency=low
- * Changed the name of the binary package `biococoa.app' to
- `sequence-converter.app', and updated its description to match its
- contents: this package does not contain the biococoa libraries, but
- the SequenceConverter demo application. (Closes: #493051)
+ * Changed the description of the binary package `biococoa.app' to reflect
+ that this package does not contain the biococoa libraries, but the
+ SequenceConverter demo application.
* Added myself to the Uploaders.
- -- Charles Plessy <plessy at debian.org> Thu, 07 Aug 2008 23:23:14 +0900
+ -- Charles Plessy <plessy at debian.org> Fri, 08 Aug 2008 13:45:58 +0900
biococoa.app (1.6.0-7) unstable; urgency=low
Modified: trunk/packages/biococoa/trunk/debian/control
===================================================================
--- trunk/packages/biococoa/trunk/debian/control 2008-08-07 14:26:24 UTC (rev 2399)
+++ trunk/packages/biococoa/trunk/debian/control 2008-08-08 04:48:09 UTC (rev 2400)
@@ -10,21 +10,18 @@
Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/biococoa/trunk/?rev=0&sc=0
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/biococoa/trunk/
-Package: sequence-converter.app
+Package: biococoa.app
Architecture: any
Depends: ${shlibs:Depends}
-Conflicts: biococoa.app ( < 1.6.0-8 )
-Replaces: biococoa.app ( < 1.6.0-8 )
-Provides: biococoa.app
Description: biological sequence file format conversion applet for GNUstep
Demo application to demonstrate the possibilities of the BioCocoa framework.
.
- SequenceConverter is a GNUstep applet to convert between sequence file formats.
- The BioCocoa framework provides developers with the opportunity to add
- support for reading and writing BEAST, Clustal, EMBL, Fasta, GCG-MSF, GDE,
- Hennig86, NCBI, NEXUS, NONA, PDB, Phylip, PIR, Plain/Raw, Swiss-Prot and
- TNT files by writing only three lines of code. The framework is written in
- Cocoa (Objective-C).
+ This package contains a GNUstep applet to convert between sequence file
+ formats. The BioCocoa framework provides developers with the opportunity to
+ add support for reading and writing BEAST, Clustal, EMBL, Fasta, GCG-MSF, GDE,
+ Hennig86, NCBI, NEXUS, NONA, PDB, Phylip, PIR, Plain/Raw, Swiss-Prot and TNT
+ files by writing only three lines of code. The framework is written in Cocoa
+ (Objective-C).
.
Version 1.6 is the last upstream version that works with GNUstep. If
newer versions are needed to work under Linux try to convince upstream to
Modified: trunk/packages/biococoa/trunk/debian/lintian-override
===================================================================
--- trunk/packages/biococoa/trunk/debian/lintian-override 2008-08-07 14:26:24 UTC (rev 2399)
+++ trunk/packages/biococoa/trunk/debian/lintian-override 2008-08-08 04:48:09 UTC (rev 2400)
@@ -1 +1 @@
-sequence-converter.app: image-file-in-usr-lib
+biococoa.app: image-file-in-usr-lib
Modified: trunk/packages/biococoa/trunk/debian/manpages
===================================================================
--- trunk/packages/biococoa/trunk/debian/manpages 2008-08-07 14:26:24 UTC (rev 2399)
+++ trunk/packages/biococoa/trunk/debian/manpages 2008-08-08 04:48:09 UTC (rev 2400)
@@ -1 +1 @@
-debian/SequenceConverter.1
+debian/BioCocoa.1
Modified: trunk/packages/biococoa/trunk/debian/menu
===================================================================
--- trunk/packages/biococoa/trunk/debian/menu 2008-08-07 14:26:24 UTC (rev 2399)
+++ trunk/packages/biococoa/trunk/debian/menu 2008-08-08 04:48:09 UTC (rev 2400)
@@ -1,2 +1,2 @@
-?package(sequence-converter.app):needs="X11" section="Applications/Science/Biology"\
- title="SequenceConverter" command="/usr/bin/SequenceConverter"
+?package(biococoa.app):needs="X11" section="Applications/Science/Biology"\
+ title="BioCocoa" command="/usr/bin/BioCocoa"
Modified: trunk/packages/biococoa/trunk/debian/patches/01_plist.patch
===================================================================
--- trunk/packages/biococoa/trunk/debian/patches/01_plist.patch 2008-08-07 14:26:24 UTC (rev 2399)
+++ trunk/packages/biococoa/trunk/debian/patches/01_plist.patch 2008-08-08 04:48:09 UTC (rev 2400)
@@ -1,13 +1,12 @@
-Index: biococoa.app-1.6.0/BioCocoaInfo.plist
-===================================================================
---- biococoa.app-1.6.0.orig/BioCocoaInfo.plist
-+++ biococoa.app-1.6.0/BioCocoaInfo.plist
+--- biococoa.orig/BioCocoaInfo.plist
++++ biococoa/BioCocoaInfo.plist
@@ -1,7 +1,7 @@
{
- ApplicationName = BioCocoa
-+ ApplicationName = "SequenceConverter";
- ApplicationDescription = "GNUstep BioCocoaDemo";
+- ApplicationDescription = "GNUstep BioCocoaDemo";
- ApplicationRelease = BioCocoa 1.6";
++ ApplicationName = "BioCocoa";
++ ApplicationDescription = "GNUstep BioCocoa";
+ ApplicationRelease = "BioCocoa 1.6";
FullVersionID = "1.6.0 Nov 2004";
Authors = ("Peter Schols <peter.schols at bio.kuleuven.ac.be>");
Modified: trunk/packages/biococoa/trunk/debian/patches/03_GNUmakefile.patch
===================================================================
--- trunk/packages/biococoa/trunk/debian/patches/03_GNUmakefile.patch 2008-08-07 14:26:24 UTC (rev 2399)
+++ trunk/packages/biococoa/trunk/debian/patches/03_GNUmakefile.patch 2008-08-08 04:48:09 UTC (rev 2400)
@@ -1,7 +1,5 @@
-Index: biococoa.app-1.6.0/GNUmakefile
-===================================================================
---- biococoa.app-1.6.0.orig/GNUmakefile
-+++ biococoa.app-1.6.0/GNUmakefile
+--- biococoa.orig/GNUmakefile
++++ biococoa/GNUmakefile
@@ -1,12 +1,14 @@
# GNUmakefile: makefile for Biococoa
#
@@ -18,20 +16,12 @@
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
-@@ -21,11 +23,11 @@
-
- include $(GNUSTEP_MAKEFILES)/common.make
-
--APP_NAME = BioCocoa
--BioCocoa_HEADERS = Controller.h Interface.h BCReader.h BCCreator.h StringAdditions.h
--BioCocoa_OBJC_FILES = main.m Controller.m Interface.m BCReader.m BCCreator.m StringAdditions.m
--BioCocoa_APPLICATION_ICON = biococoa.tiff
+@@ -25,7 +27,7 @@
+ BioCocoa_HEADERS = Controller.h Interface.h BCReader.h BCCreator.h StringAdditions.h
+ BioCocoa_OBJC_FILES = main.m Controller.m Interface.m BCReader.m BCCreator.m StringAdditions.m
+ BioCocoa_APPLICATION_ICON = biococoa.tiff
-BioCocoa_RESOURCE_FILES = biococoa.tiff
-+APP_NAME = SequenceConverter
-+SequenceConverter_HEADERS = Controller.h Interface.h BCReader.h BCCreator.h StringAdditions.h
-+SequenceConverter_OBJC_FILES = main.m Controller.m Interface.m BCReader.m BCCreator.m StringAdditions.m
-+SequenceConverter_APPLICATION_ICON = biococoa.tiff
-+SequenceConverter_RESOURCE_FILES = biococoa.tiff SequenceConverterInfo.plist
++BioCocoa_RESOURCE_FILES = biococoa.tiff BioCocoaInfo.plist
include $(GNUSTEP_MAKEFILES)/application.make
Modified: trunk/packages/biococoa/trunk/debian/rules
===================================================================
--- trunk/packages/biococoa/trunk/debian/rules 2008-08-07 14:26:24 UTC (rev 2399)
+++ trunk/packages/biococoa/trunk/debian/rules 2008-08-08 04:48:09 UTC (rev 2400)
@@ -11,7 +11,6 @@
build-stamp:
dh_testdir
- cp BioCocoaInfo.plist SequenceConverterInfo.plist
gs_make
touch build-stamp
@@ -20,15 +19,15 @@
dh_testroot
rm -f build-stamp
gs_make distclean clean
- dh_clean SequenceConverterInfo.plist
+ dh_clean
install: build
dh_testdir
dh_testroot
dh_clean -k
dh_installdirs
- gs_make install DESTDIR=$(CURDIR)/debian/sequence-converter.app GNUSTEP_INSTALLATION_DOMAIN=SYSTEM
- find `pwd`/debian/sequence-converter.app -name "*.plist" -exec chmod -x {} \;
+ gs_make install DESTDIR=$(CURDIR)/debian/biococoa.app GNUSTEP_INSTALLATION_DOMAIN=SYSTEM
+ find `pwd`/debian/biococoa.app -name "*.plist" -exec chmod -x {} \;
dh_install debian/*.desktop usr/share/applications/
rm $(CURDIR)/debian/*.app/usr/lib/GNUstep/Applications/*.app/Resources/*.desktop
@@ -41,7 +40,7 @@
dh_testdir
dh_testroot
dh_installchangelogs
- install -m 644 debian/lintian-override $(CURDIR)/debian/sequence-converter.app/usr/share/lintian/overrides/sequence-converter.app
+ install -m 644 debian/lintian-override $(CURDIR)/debian/biococoa.app/usr/share/lintian/overrides/biococoa.app
dh_installdocs
dh_installmenu
dh_installman
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