[med-svn] r1376 - trunk/packages/infernal/trunk/debian

[smoe-guest at alioth.debian.org]

Author: smoe-guest
Date: 2008-02-14 14:03:19 +0000 (Thu, 14 Feb 2008)
New Revision: 1376

Modified:
   trunk/packages/infernal/trunk/debian/README.Debian
   trunk/packages/infernal/trunk/debian/README.Debian.source
   trunk/packages/infernal/trunk/debian/copyright
Log:
Further improvements on the copyright and READMEs.


Modified: trunk/packages/infernal/trunk/debian/README.Debian
===================================================================
--- trunk/packages/infernal/trunk/debian/README.Debian	2008-02-14 13:48:11 UTC (rev 1375)
+++ trunk/packages/infernal/trunk/debian/README.Debian	2008-02-14 14:03:19 UTC (rev 1376)
@@ -19,8 +19,10 @@
 leave with that situation since the two are not safely substituted for
 another.
 
-Infernal offers to be compiled for LAM-MPI. Please contact us if there
-is respective demand.
+Infernal offers to be compiled for LAM-MPI. Please contact us if there is
+respective demand. Also, the Large File Support (LFS) was not activated,
+which may be of concern for large screening projects on files larger
+than 2GB.
 
 Infernal optionally uses the CFSQP library which is non-free. This is
 not supported by this Debian package. Please address the Userguide for

Modified: trunk/packages/infernal/trunk/debian/README.Debian.source
===================================================================
--- trunk/packages/infernal/trunk/debian/README.Debian.source	2008-02-14 13:48:11 UTC (rev 1375)
+++ trunk/packages/infernal/trunk/debian/README.Debian.source	2008-02-14 14:03:19 UTC (rev 1376)
@@ -14,4 +14,7 @@
 As an interim solution all the files that may be considered
 problematic are not part of the source distribution.
 
+The redundancy of the squid folder with the Debian package
+biosquid needs to remain until upstream resolves the conflicts.
+
 -- Steffen Moeller   Sun, 20 Jan 2008 23:05:22 +0100

Modified: trunk/packages/infernal/trunk/debian/copyright
===================================================================
--- trunk/packages/infernal/trunk/debian/copyright	2008-02-14 13:48:11 UTC (rev 1375)
+++ trunk/packages/infernal/trunk/debian/copyright	2008-02-14 14:03:19 UTC (rev 1376)
@@ -1,5 +1,5 @@
 X-Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat
-X-Debianized-By: Steffen Möller <moeller at debian.org>
+X-Debianized-By: Steffen Moeller <moeller at debian.org>
 X-Debianized-Date: Mon, 10 Sep 2007 23:15:37 +0200
 X-Source-Downloaded-From: ftp://infernal.janelia.org/pub/software/infernal
 X-Upstream-Author: Infernal developer team at HHMI Janelia Farm:
@@ -11,7 +11,7 @@
 
 
 Files: debian/*
-Copyright: © 2007-2008 Steffen Möller <moeller at debian.org>
+Copyright: © 2007-2008 Steffen Moeller <moeller at debian.org>
            © 2007-2008 Charles Plessy <charles-debian-nospam at plessy.org>
 License: GPL-2+
 
@@ -49,7 +49,9 @@
 
 Files: easel/documentation/figures/evd*.pdf, easel/documentation/figures/gev*.pdf
 X-Comment: Those files are figures with only a few words of text, that probably
- have been generated in a command line session, and therefore have no source.
+ have been generated in a command line session. Most of these will not be possible
+ to recreate without the raw data at hand. As an interim solution, the folder
+ easel/documentation was removed from the source.
 
 
 Files: Userguide.pdf
@@ -67,11 +69,15 @@
     LICENSE      -- version 2 of the GNU Public License (see COPYRIGHT)"
  .
  However:
-  - There are no COPYRIGHT and LICENSE files in the squid directory;
+  - There are no COPYRIGHT and LICENSE files in the squid directory but the
+    source files indicate to be distributed under the terms of the GPL;
   - ../COPYRIGHT ../LICENSE indicate the GNU GPL "version 2 or (at your option)
-     any later version";
-  - a more recent version of the squid library, distributed in Debian's biosquid
-    package, is also disributed under version 2 or later.
+     any later version", upstream behaved well in not distributing the same
+     files twice;
+  - squid is of the same author as it is infernal.
+  - a more recent but "incompatible" version (upstream) of the squid library,
+    distributed in Debian's biosquid package, is also disributed under version
+    2 or later.
 
 
 Files: *
@@ -105,8 +111,8 @@
  .
  You should have received a copy of the GNU General Public License
  along with this software, in the file LICENSE; if not, write to the
- Free Software Foundation, Inc., 675 Mass. Ave, Cambridge, MA 02139
- USA or see http://www.gnu.org/
+ Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston,
+ MA 02110-1301, USA or see http://www.gnu.org/
 
 X-Comment: On Debian systems, the complete text of the GNU General
  Public License can be found in `/usr/share/common-licenses/GPL'.