[med-svn] r1379 - in trunk/packages: . libgenome libgenome/trunk libgenome/trunk/debian
tille at alioth.debian.org
tille at alioth.debian.org
Thu Feb 14 21:55:22 UTC 2008
Author: tille
Date: 2008-02-14 21:55:21 +0000 (Thu, 14 Feb 2008)
New Revision: 1379
Added:
trunk/packages/libgenome/
trunk/packages/libgenome/tags/
trunk/packages/libgenome/trunk/
trunk/packages/libgenome/trunk/debian/
trunk/packages/libgenome/trunk/debian/README.Debian
trunk/packages/libgenome/trunk/debian/changelog
trunk/packages/libgenome/trunk/debian/compat
trunk/packages/libgenome/trunk/debian/control
trunk/packages/libgenome/trunk/debian/copyright
trunk/packages/libgenome/trunk/debian/docs
trunk/packages/libgenome/trunk/debian/libgenome1-dev.dirs
trunk/packages/libgenome/trunk/debian/libgenome1-dev.install
trunk/packages/libgenome/trunk/debian/libgenome1.dirs
trunk/packages/libgenome/trunk/debian/libgenome1.doc-base.EX
trunk/packages/libgenome/trunk/debian/libgenome1.install
trunk/packages/libgenome/trunk/debian/rules
trunk/packages/libgenome/trunk/debian/watch
Log:
dh_make stuff for libGenome
Added: trunk/packages/libgenome/trunk/debian/README.Debian
===================================================================
--- trunk/packages/libgenome/trunk/debian/README.Debian (rev 0)
+++ trunk/packages/libgenome/trunk/debian/README.Debian 2008-02-14 21:55:21 UTC (rev 1379)
@@ -0,0 +1,7 @@
+libGenome for Debian
+--------------------
+
+This library is packaged as a precondition of the Mauve
+multiple genome alignment package.
+
+ -- Andreas Tille <tille at debian.org> Thu, 14 Feb 2008 22:13:45 +0100
Added: trunk/packages/libgenome/trunk/debian/changelog
===================================================================
--- trunk/packages/libgenome/trunk/debian/changelog (rev 0)
+++ trunk/packages/libgenome/trunk/debian/changelog 2008-02-14 21:55:21 UTC (rev 1379)
@@ -0,0 +1,6 @@
+libgenome (1.3.0-1) unstable; urgency=low
+
+ * Initial release (Closes: #nnnn) <nnnn is the bug number of your ITP>
+
+ -- Andreas Tille <tille at debian.org> Thu, 14 Feb 2008 22:13:45 +0100
+
Added: trunk/packages/libgenome/trunk/debian/compat
===================================================================
--- trunk/packages/libgenome/trunk/debian/compat (rev 0)
+++ trunk/packages/libgenome/trunk/debian/compat 2008-02-14 21:55:21 UTC (rev 1379)
@@ -0,0 +1 @@
+6
Added: trunk/packages/libgenome/trunk/debian/control
===================================================================
--- trunk/packages/libgenome/trunk/debian/control (rev 0)
+++ trunk/packages/libgenome/trunk/debian/control 2008-02-14 21:55:21 UTC (rev 1379)
@@ -0,0 +1,52 @@
+Source: libgenome
+Priority: optional
+Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 6), autotools-dev, d-shlibs
+Standards-Version: 3.7.3
+Section: libs
+Homepage: http://gel.ahabs.wisc.edu/mauve/source/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/libgenome/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/libgenome/trunk/
+
+Package: libgenome1-dev
+Section: libdevel
+Architecture: any
+Depends: libgenome1 (= ${binary:Version}), ${devlibs:Depends}
+Provides: libgenome-dev
+Conflicts: libgenome-dev
+Description: toolkit for developing bioinformatic related software
+ libGenome is a freely available toolkit for developing bioinformatic related
+ software in C++. It is intended to take the hassle out of performing common
+ tasks on genetic sequence and annotation data.
+ .
+ Among other things, libGenome can help you:
+ .
+ * Read and write Multi-FastA format files
+ * Read and write GenBank flat file database entries
+ * Append, chop, truncate, reverse, complement, translate, and otherwise
+ mangle sequence data
+ * Access annotation in GenBank flat files
+ .
+ This is the development package containing the statically linked
+ library and the header files.
+
+Package: libgenome1
+Section: libs
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: toolkit for developing bioinformatic related software
+ libGenome is a freely available toolkit for developing bioinformatic related
+ software in C++. It is intended to take the hassle out of performing common
+ tasks on genetic sequence and annotation data.
+ .
+ Among other things, libGenome can help you:
+ .
+ * Read and write Multi-FastA format files
+ * Read and write GenBank flat file database entries
+ * Append, chop, truncate, reverse, complement, translate, and otherwise
+ mangle sequence data
+ * Access annotation in GenBank flat files
+ .
+ This package contains the dynamic library.
Added: trunk/packages/libgenome/trunk/debian/copyright
===================================================================
--- trunk/packages/libgenome/trunk/debian/copyright (rev 0)
+++ trunk/packages/libgenome/trunk/debian/copyright 2008-02-14 21:55:21 UTC (rev 1379)
@@ -0,0 +1,23 @@
+Source: http://gel.ahabs.wisc.edu/mauve/source/
+
+Files: debian/*
+Copyright: © 2008, Andreas Tille <tille at debian.org>
+License: GPL-2+
+ This package is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+
+Files: *
+Copyright: © 2003, 2004, 2005, 2006, 2007, Aaron Darling -- darling at cs.wisc.edu
+ Robert Mau -- mau at genome.wisc.edu
+ Nicole T. Perna -- perna at ahabs.wisc.edu
+ Frederick R. Blattner -- fred at genome.wisc.edu
+
+License: GPL-2
+ This package is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation version 2 of the License.
+
+On Debian systems, the complete text of the licenses can be found in:
+GPL-2 - `/usr/share/common-licenses/GPL-2'
Added: trunk/packages/libgenome/trunk/debian/docs
===================================================================
--- trunk/packages/libgenome/trunk/debian/docs (rev 0)
+++ trunk/packages/libgenome/trunk/debian/docs 2008-02-14 21:55:21 UTC (rev 1379)
@@ -0,0 +1,2 @@
+NEWS
+README
Added: trunk/packages/libgenome/trunk/debian/libgenome1-dev.dirs
===================================================================
--- trunk/packages/libgenome/trunk/debian/libgenome1-dev.dirs (rev 0)
+++ trunk/packages/libgenome/trunk/debian/libgenome1-dev.dirs 2008-02-14 21:55:21 UTC (rev 1379)
@@ -0,0 +1,2 @@
+usr/lib
+usr/include
Added: trunk/packages/libgenome/trunk/debian/libgenome1-dev.install
===================================================================
--- trunk/packages/libgenome/trunk/debian/libgenome1-dev.install (rev 0)
+++ trunk/packages/libgenome/trunk/debian/libgenome1-dev.install 2008-02-14 21:55:21 UTC (rev 1379)
@@ -0,0 +1,6 @@
+usr/include/*
+usr/lib/lib*.a
+usr/lib/lib*.so
+usr/lib/pkgconfig/*
+usr/lib/*.la
+usr/share/pkgconfig/*
Added: trunk/packages/libgenome/trunk/debian/libgenome1.dirs
===================================================================
--- trunk/packages/libgenome/trunk/debian/libgenome1.dirs (rev 0)
+++ trunk/packages/libgenome/trunk/debian/libgenome1.dirs 2008-02-14 21:55:21 UTC (rev 1379)
@@ -0,0 +1 @@
+usr/lib
Added: trunk/packages/libgenome/trunk/debian/libgenome1.doc-base.EX
===================================================================
--- trunk/packages/libgenome/trunk/debian/libgenome1.doc-base.EX (rev 0)
+++ trunk/packages/libgenome/trunk/debian/libgenome1.doc-base.EX 2008-02-14 21:55:21 UTC (rev 1379)
@@ -0,0 +1,22 @@
+Document: libgenome
+Title: Debian libgenome Manual
+Author: <insert document author here>
+Abstract: This manual describes what libgenome is
+ and how it can be used to
+ manage online manuals on Debian systems.
+Section: unknown
+
+Format: debiandoc-sgml
+Files: /usr/share/doc/libgenome/libgenome.sgml.gz
+
+Format: postscript
+Files: /usr/share/doc/libgenome/libgenome.ps.gz
+
+Format: text
+Files: /usr/share/doc/libgenome/libgenome.text.gz
+
+Format: HTML
+Index: /usr/share/doc/libgenome/html/index.html
+Files: /usr/share/doc/libgenome/html/*.html
+
+
Added: trunk/packages/libgenome/trunk/debian/libgenome1.install
===================================================================
--- trunk/packages/libgenome/trunk/debian/libgenome1.install (rev 0)
+++ trunk/packages/libgenome/trunk/debian/libgenome1.install 2008-02-14 21:55:21 UTC (rev 1379)
@@ -0,0 +1 @@
+usr/lib/lib*.so.*
Added: trunk/packages/libgenome/trunk/debian/rules
===================================================================
--- trunk/packages/libgenome/trunk/debian/rules (rev 0)
+++ trunk/packages/libgenome/trunk/debian/rules 2008-02-14 21:55:21 UTC (rev 1379)
@@ -0,0 +1,106 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+# Sample debian/rules that uses debhelper.
+# This file was originally written by Joey Hess and Craig Small.
+# As a special exception, when this file is copied by dh-make into a
+# dh-make output file, you may use that output file without restriction.
+# This special exception was added by Craig Small in version 0.37 of dh-make.
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+
+# These are used for cross-compiling and for saving the configure script
+# from having to guess our platform (since we know it already)
+DEB_HOST_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_HOST_GNU_TYPE)
+DEB_BUILD_GNU_TYPE ?= $(shell dpkg-architecture -qDEB_BUILD_GNU_TYPE)
+
+
+# shared library versions, option 1
+version=2.0.5
+major=2
+# option 2, assuming the library is created as src/.libs/libfoo.so.2.0.5 or so
+#version=`ls src/.libs/lib*.so.* | \
+# awk '{if (match($$0,/[0-9]+\.[0-9]+\.[0-9]+$$/)) print substr($$0,RSTART)}'`
+#major=`ls src/.libs/lib*.so.* | \
+# awk '{if (match($$0,/\.so\.[0-9]+$$/)) print substr($$0,RSTART+4)}'`
+
+config.status: configure
+ dh_testdir
+ # Add here commands to configure the package.
+ifneq "$(wildcard /usr/share/misc/config.sub)" ""
+ cp -f /usr/share/misc/config.sub config.sub
+endif
+ifneq "$(wildcard /usr/share/misc/config.guess)" ""
+ cp -f /usr/share/misc/config.guess config.guess
+endif
+ ./configure --host=$(DEB_HOST_GNU_TYPE) --build=$(DEB_BUILD_GNU_TYPE) --prefix=/usr --mandir=\$${prefix}/share/man --infodir=\$${prefix}/share/info CFLAGS="$(CFLAGS)" LDFLAGS="-Wl,-z,defs"
+
+
+build: build-stamp
+build-stamp: config.status
+ dh_testdir
+
+ # Add here commands to compile the package.
+ $(MAKE)
+
+ touch $@
+
+clean:
+ dh_testdir
+ dh_testroot
+ rm -f build-stamp
+
+ # Add here commands to clean up after the build process.
+ $(MAKE) distclean
+ rm -f config.sub config.guess
+
+ dh_clean
+
+install: build
+ dh_testdir
+ dh_testroot
+ dh_clean -k
+ dh_installdirs
+
+ # Add here commands to install the package into debian/tmp
+ $(MAKE) DESTDIR=$(CURDIR)/debian/tmp install
+
+
+# Build architecture-independent files here.
+binary-indep: build install
+# We have nothing to do by default.
+
+# Build architecture-dependent files here.
+binary-arch: build install
+ dh_testdir
+ dh_testroot
+ dh_installchangelogs ChangeLog
+ dh_installdocs
+ dh_installexamples
+# dh_install
+# dh_installmenu
+# dh_installdebconf
+# dh_installlogrotate
+# dh_installemacsen
+# dh_installpam
+# dh_installmime
+# dh_installinit
+# dh_installcron
+# dh_installinfo
+ dh_installman
+ dh_link
+ dh_strip
+ dh_compress
+ dh_fixperms
+# dh_perl
+# dh_python
+# dh_makeshlibs
+ dh_installdeb
+ dh_shlibdeps
+ dh_gencontrol
+ dh_md5sums
+ dh_builddeb
+
+binary: binary-indep binary-arch
+.PHONY: build clean binary-indep binary-arch binary install
Property changes on: trunk/packages/libgenome/trunk/debian/rules
___________________________________________________________________
Name: svn:executable
+ *
Added: trunk/packages/libgenome/trunk/debian/watch
===================================================================
--- trunk/packages/libgenome/trunk/debian/watch (rev 0)
+++ trunk/packages/libgenome/trunk/debian/watch 2008-02-14 21:55:21 UTC (rev 1379)
@@ -0,0 +1,3 @@
+version=3
+
+http://gel.ahabs.wisc.edu/mauve/source/libGenome-(.*)\.tar\.gz
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