[med-svn] r1466 - trunk/packages/clustalw/trunk/debian

[charles-guest at alioth.debian.org]

Author: charles-guest
Date: 2008-02-25 07:16:17 +0000 (Mon, 25 Feb 2008)
New Revision: 1466

Modified:
   trunk/packages/clustalw/trunk/debian/changelog
   trunk/packages/clustalw/trunk/debian/control
Log:
New upstream release

Modified: trunk/packages/clustalw/trunk/debian/changelog
===================================================================
--- trunk/packages/clustalw/trunk/debian/changelog	2008-02-25 06:36:12 UTC (rev 1465)
+++ trunk/packages/clustalw/trunk/debian/changelog	2008-02-25 07:16:17 UTC (rev 1466)
@@ -1,9 +1,11 @@
-clustalw (2.0.1-1) UNRELEASED; urgency=low
+clustalw (2.0.3-1) UNRELEASED; urgency=low
 
   [ Steffen Moeller ]
   * New upstream release
-    - Includes new code for UPGMA guide trees.
-    - Includes iterative alignment facility.
+    - Includes new code for UPGMA guide trees. (v. 2.0.0)
+    - Includes iterative alignment facility. (v. 2.0.0)
+    - fixed bug where Pseudo -FASTA format files were not being processed
+      as previously in v1.83 (v. 2.0.3)
   * updated debian/watch
   * moved clustalw.1 into debian folder (easier to work
     with svn-buildpackage)

Modified: trunk/packages/clustalw/trunk/debian/control
===================================================================
--- trunk/packages/clustalw/trunk/debian/control	2008-02-25 06:36:12 UTC (rev 1465)
+++ trunk/packages/clustalw/trunk/debian/control	2008-02-25 07:16:17 UTC (rev 1466)
@@ -17,21 +17,16 @@
 Suggests: clustalx, seaview
 Enhances: t-coffee
 Description: global multiple nucleotide or peptide sequence alignment
- This program performs an alignment of multiple nucleotide or amino
- acid sequences. It recognizes the format of input sequences and whether
- the sequences are nucleic acid (DNA/RNA) or amino acid (proteins). The
- output format may be selected from in various formats for multiple alignments
- such as Phylip or FASTA. Clustal W is very well accepted. An alternative,
- particularly for fragmented sequences, may be
- T-Coffee (http://www.ch.embnet.org/software/TCoffee.html)
- DIALIGN (http://dialign.gobics.de/)
- or one of the other many algorithms as summarised on
- http://www.techfak.uni-bielefeld.de/bcd/Curric/MulAli/welcome.html.
+ This program performs an alignment of multiple nucleotide or amino acid
+ sequences. It recognizes the format of input sequences and whether the
+ sequences are nucleic acid (DNA/RNA) or amino acid (proteins). The output
+ format may be selected from in various formats for multiple alignments such as
+ Phylip or FASTA. Clustal W is very well accepted.
  .
- The output of Clustal W can be edited manually but preferably with an alignment
- editor like SeaView or within its companion Clustal X.
- When building a model from your alignment, this can be applied for improved
- database searches. The Debian package hmmer creates such in form of an HMM. 
+ The output of Clustal W can be edited manually but preferably with an
+ alignment editor like SeaView or within its companion Clustal X. When building
+ a model from your alignment, this can be applied for improved database
+ searches. The Debian package hmmer creates such in form of an HMM. 
  .
  For details and citation purposes see paper "Clustal W and Clustal X version
  2.0", Larkin M., et al. Bioinformatics 2007 23(21):2947-2948