[med-svn] r1472 - in trunk/packages/boxshade/tags: . 3.3.1-3

tille at alioth.debian.org tille at alioth.debian.org
Tue Feb 26 17:48:04 UTC 2008


Author: tille
Date: 2008-02-26 17:48:03 +0000 (Tue, 26 Feb 2008)
New Revision: 1472

Added:
   trunk/packages/boxshade/tags/3.3.1-3/
   trunk/packages/boxshade/tags/3.3.1-3/boxshade.sh
   trunk/packages/boxshade/tags/3.3.1-3/changelog
   trunk/packages/boxshade/tags/3.3.1-3/control
   trunk/packages/boxshade/tags/3.3.1-3/get-orig-source
   trunk/packages/boxshade/tags/3.3.1-3/rules
Removed:
   trunk/packages/boxshade/tags/3.3.1-3/changelog
   trunk/packages/boxshade/tags/3.3.1-3/control
   trunk/packages/boxshade/tags/3.3.1-3/rules
Log:
Tagged 3.3.1-3 release


Copied: trunk/packages/boxshade/tags/3.3.1-3 (from rev 1470, trunk/packages/boxshade/trunk/debian)

Copied: trunk/packages/boxshade/tags/3.3.1-3/boxshade.sh (from rev 1471, trunk/packages/boxshade/trunk/debian/boxshade.sh)
===================================================================
--- trunk/packages/boxshade/tags/3.3.1-3/boxshade.sh	                        (rev 0)
+++ trunk/packages/boxshade/tags/3.3.1-3/boxshade.sh	2008-02-26 17:48:03 UTC (rev 1472)
@@ -0,0 +1,3 @@
+#!/bin/bash
+export BOXDIR=/etc/boxshade
+/usr/lib/boxshade/boxshade $*

Deleted: trunk/packages/boxshade/tags/3.3.1-3/changelog
===================================================================
--- trunk/packages/boxshade/trunk/debian/changelog	2008-02-26 08:06:06 UTC (rev 1470)
+++ trunk/packages/boxshade/tags/3.3.1-3/changelog	2008-02-26 17:48:03 UTC (rev 1472)
@@ -1,71 +0,0 @@
-boxshade (3.3.1-3) UNRELEASED; urgency=low
-
-  [ David Paleino ]
-  * debian/boxshade.1 has been statically generated: this saves some
-    time (and space) on buildds (leaving the XML version for future
-    editing)
-  * debian/control:
-    - B-D updated (manpage is not generated on buildds anymore)
-    - added myself to Uploaders
-    - XS-Vcs-* moved to Vcs-* and fixed
-    - Homepage field now replaces the old pseudo-field in the long
-      description
-    - removed XS- from DM-Upload-Allowed
-  * debian/rules:
-    - reflecting static generation of boxshade.1 -- removing boxshade.1
-      target
-    - some general cleanup
-  * debian/README.Debian updated: the new debian-med.alioth.d.o website
-    is now mentioned.
-
-  [ Nelson A. de Oliveira ]
-  * Added watch file.
-
- -- David Paleino <d.paleino at gmail.com>  Wed, 06 Feb 2008 12:02:26 +0100
-
-boxshade (3.3.1-2) unstable; urgency=low
-
-  [Charles Plessy]
-
-  * Debian Menu transition: Apps/Science becomes Applications/Science/Biology.
-  * makefile.unx : changes managed using the `quilt' patch system.
-  * makefile.unx : commenting `LDFLAGS= -s' so that stripping is handled by
-    dh_strip (Closes: #436605).
-  * debian/rules : `ifeq (,$(findstring nostrip,$(DEB_BUILD_OPTIONS)))' test
-    removed because dh_strip can work without.
-
-  [Steffen Moeller]
-
-  * Updated README.Debian with reference to Debian-Med
-  * Updated email address to moeller at debian.org
-
- -- Charles Plessy <charles-debian-nospam at plessy.org>  Thu,  9 Aug 2007 10:38:31 +0900
-
-boxshade (3.3.1-1) unstable; urgency=low
-
-  [ Steffen Moeller ]
-  * Removed [biology] tag from description
-
-  [ Charles Plessy ]
-  * New version number, but upsteams' 3.3.1 was already packaged in Debian
-    under number 3.1.1 (Closes: #385255).
-  * Swiching to collaborative maintainance: Maintainer is a mailing-list,
-    Uploaders are real people.
-  * Tidying the package:
-    - Using debhelper v5 and conforming to policy 3.7.2.
-    - Updated manpage using the template of docbook-xsl 1.71.0.dfsg.1-1.1.
-    - Converted the manpage to unicode.
-    - Relicenced the manpage to "same licence as Boxshade itself", with the
-      agreement of Steffen.
-    - Added XS-Vcs-Svn and XS-Vcs-Browser to debian/control.
-    - Removed empty files debian/dirs, debian/install, debian/conffiles.
-  * Replaced clustalw (non-freee) by kalign (free)|clustalw in the Suggests field.
-  * Changed priority to optional.
-
- -- Charles Plessy <charles-debian-nospam at plessy.org>  Sun, 25 Feb 2007 08:47:18 +0900
-
-boxshade (3.1.1-1) unstable; urgency=low
-
-  * Initial Release (Closes: #234923).
-
- -- Steffen Moeller <moeller at pzr.uni-rostock.de>  Thu, 26 Feb 2004 13:17:22 +0100

Copied: trunk/packages/boxshade/tags/3.3.1-3/changelog (from rev 1471, trunk/packages/boxshade/trunk/debian/changelog)
===================================================================
--- trunk/packages/boxshade/tags/3.3.1-3/changelog	                        (rev 0)
+++ trunk/packages/boxshade/tags/3.3.1-3/changelog	2008-02-26 17:48:03 UTC (rev 1472)
@@ -0,0 +1,78 @@
+boxshade (3.3.1-3) unstable; urgency=low
+
+  [ David Paleino ]
+  * debian/boxshade.1 has been statically generated: this saves some
+    time (and space) on buildds (leaving the XML version for future
+    editing)
+  * debian/control:
+    - B-D updated (manpage is not generated on buildds anymore)
+    - added myself to Uploaders
+    - XS-Vcs-* moved to Vcs-* and fixed
+    - Homepage field now replaces the old pseudo-field in the long
+      description
+    - removed XS- from DM-Upload-Allowed
+  * debian/rules:
+    - reflecting static generation of boxshade.1 -- removing boxshade.1
+      target
+    - some general cleanup
+  * debian/README.Debian updated: the new debian-med.alioth.d.o website
+    is now mentioned.
+
+  [ Nelson A. de Oliveira ]
+  * Added watch file.
+
+  [ Andreas Tille ]
+  * Added myself to uploaders
+  * Added path to dh_installman
+  * Moved additional shellscript wrapper boxshade.sh to debian dir
+  * Added debian/get-orig-source script and added get-orig-source
+    target to debian/rules
+
+ -- Andreas Tille <tille at debian.org>  Tue, 26 Feb 2008 07:28:42 +0100
+
+boxshade (3.3.1-2) unstable; urgency=low
+
+  [Charles Plessy]
+
+  * Debian Menu transition: Apps/Science becomes Applications/Science/Biology.
+  * makefile.unx : changes managed using the `quilt' patch system.
+  * makefile.unx : commenting `LDFLAGS= -s' so that stripping is handled by
+    dh_strip (Closes: #436605).
+  * debian/rules : `ifeq (,$(findstring nostrip,$(DEB_BUILD_OPTIONS)))' test
+    removed because dh_strip can work without.
+
+  [Steffen Moeller]
+
+  * Updated README.Debian with reference to Debian-Med
+  * Updated email address to moeller at debian.org
+
+ -- Charles Plessy <charles-debian-nospam at plessy.org>  Thu,  9 Aug 2007 10:38:31 +0900
+
+boxshade (3.3.1-1) unstable; urgency=low
+
+  [ Steffen Moeller ]
+  * Removed [biology] tag from description
+
+  [ Charles Plessy ]
+  * New version number, but upsteams' 3.3.1 was already packaged in Debian
+    under number 3.1.1 (Closes: #385255).
+  * Swiching to collaborative maintainance: Maintainer is a mailing-list,
+    Uploaders are real people.
+  * Tidying the package:
+    - Using debhelper v5 and conforming to policy 3.7.2.
+    - Updated manpage using the template of docbook-xsl 1.71.0.dfsg.1-1.1.
+    - Converted the manpage to unicode.
+    - Relicenced the manpage to "same licence as Boxshade itself", with the
+      agreement of Steffen.
+    - Added XS-Vcs-Svn and XS-Vcs-Browser to debian/control.
+    - Removed empty files debian/dirs, debian/install, debian/conffiles.
+  * Replaced clustalw (non-freee) by kalign (free)|clustalw in the Suggests field.
+  * Changed priority to optional.
+
+ -- Charles Plessy <charles-debian-nospam at plessy.org>  Sun, 25 Feb 2007 08:47:18 +0900
+
+boxshade (3.1.1-1) unstable; urgency=low
+
+  * Initial Release (Closes: #234923).
+
+ -- Steffen Moeller <moeller at pzr.uni-rostock.de>  Thu, 26 Feb 2004 13:17:22 +0100

Deleted: trunk/packages/boxshade/tags/3.3.1-3/control
===================================================================
--- trunk/packages/boxshade/trunk/debian/control	2008-02-26 08:06:06 UTC (rev 1470)
+++ trunk/packages/boxshade/tags/3.3.1-3/control	2008-02-26 17:48:03 UTC (rev 1472)
@@ -1,29 +0,0 @@
-Source: boxshade
-Section: science
-Priority: optional
-Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-DM-Upload-Allowed: yes
-Uploaders: Steffen Moeller <moeller at debian.org>, Charles Plessy <charles-debian-nospam at plessy.org>,
- David Paleino <d.paleino at gmail.com>
-Build-Depends: debhelper (>= 5), quilt
-Standards-Version: 3.7.3
-Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/boxshade/trunk/?rev=0&sc=0
-Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/boxshade/trunk/
-Homepage: http://www.ch.embnet.org/software/BOX_form.html
-
-Package: boxshade
-Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}
-Suggests: seaview, kalign | clustalw | mafft | hmmer, xfig, texlive-latex-extra
-Description: Pretty-printing of multiple sequence alignments
- Boxshade is a program for creating good looking printouts from
- multiple-aligned protein or DNA sequences. The program does not perform
- the alignment by itself and requires as input a file that was created
- by a multiple alignment program or manually edited with respective tools.
- .
- Boxshade reads multiple-aligned sequences from either PILEUP-MSF,
- CLUSTAL-ALN, MALIGNED-data and ESEE-save files (limited to a maximum
- of 150 sequences with up to 10000 elements each).  Various kinds of
- shading can be applied to identical/similar residues. Output is written
- to screen or to a file in the following formats: ANSI/VT100, PS/EPS,
- RTF, HPGL, ReGIS, LJ250-printer, ASCII, xFIG, PICT, HTML

Copied: trunk/packages/boxshade/tags/3.3.1-3/control (from rev 1471, trunk/packages/boxshade/trunk/debian/control)
===================================================================
--- trunk/packages/boxshade/tags/3.3.1-3/control	                        (rev 0)
+++ trunk/packages/boxshade/tags/3.3.1-3/control	2008-02-26 17:48:03 UTC (rev 1472)
@@ -0,0 +1,31 @@
+Source: boxshade
+Section: science
+Priority: optional
+Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Steffen Moeller <moeller at debian.org>,
+ Charles Plessy <charles-debian-nospam at plessy.org>,
+ David Paleino <d.paleino at gmail.com>,
+ Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 5), quilt
+Standards-Version: 3.7.3
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/boxshade/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/boxshade/trunk/
+Homepage: http://www.ch.embnet.org/software/BOX_form.html
+
+Package: boxshade
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Suggests: seaview, kalign | clustalw | mafft | hmmer, xfig, texlive-latex-extra
+Description: Pretty-printing of multiple sequence alignments
+ Boxshade is a program for creating good looking printouts from
+ multiple-aligned protein or DNA sequences. The program does not perform
+ the alignment by itself and requires as input a file that was created
+ by a multiple alignment program or manually edited with respective tools.
+ .
+ Boxshade reads multiple-aligned sequences from either PILEUP-MSF,
+ CLUSTAL-ALN, MALIGNED-data and ESEE-save files (limited to a maximum
+ of 150 sequences with up to 10000 elements each).  Various kinds of
+ shading can be applied to identical/similar residues. Output is written
+ to screen or to a file in the following formats: ANSI/VT100, PS/EPS,
+ RTF, HPGL, ReGIS, LJ250-printer, ASCII, xFIG, PICT, HTML

Copied: trunk/packages/boxshade/tags/3.3.1-3/get-orig-source (from rev 1471, trunk/packages/boxshade/trunk/debian/get-orig-source)
===================================================================
--- trunk/packages/boxshade/tags/3.3.1-3/get-orig-source	                        (rev 0)
+++ trunk/packages/boxshade/tags/3.3.1-3/get-orig-source	2008-02-26 17:48:03 UTC (rev 1472)
@@ -0,0 +1,27 @@
+#!/bin/sh -e
+set -e
+# set -x
+NAME=boxshade
+VERSION=3.3.1
+UTARBALL=source.tar.Z
+downloadurl=ftp://www.isrec.isb-sib.ch/pub/software/unix/boxshade/3.3.1/
+
+TMPDIR=../tarballs
+mkdir -p "$TMPDIR"
+cd "$TMPDIR"
+
+if [ -e ${UTARBALL} ] ; then
+    echo "Using existing tarball ${UTARBALL}"
+else
+    wget --quiet ${downloadurl}/${UTARBALL}
+fi
+
+DISTDIR=${NAME}-${VERSION}
+mkdir -p ${DISTDIR}
+cd ${DISTDIR}
+tar -xzf ../"$UTARBALL"
+cd ..
+
+GZIP=-9 tar -czf "$NAME"_"$VERSION".orig.tar.gz "$NAME"-"$VERSION"
+
+rm -rf "$NAME"-"$VERSION"

Deleted: trunk/packages/boxshade/tags/3.3.1-3/rules
===================================================================
--- trunk/packages/boxshade/trunk/debian/rules	2008-02-26 08:06:06 UTC (rev 1470)
+++ trunk/packages/boxshade/tags/3.3.1-3/rules	2008-02-26 17:48:03 UTC (rev 1472)
@@ -1,71 +0,0 @@
-#!/usr/bin/make -f
-# -*- makefile -*-
-# Sample debian/rules that uses debhelper.
-# GNU copyright 1997 to 1999 by Joey Hess.
-
-CFLAGS = -Wall -g
-
-ifneq (,$(findstring noopt,$(DEB_BUILD_OPTIONS)))
-	CFLAGS += -O0
-else
-	CFLAGS += -O2
-endif
-
-include /usr/share/quilt/quilt.make
-
-#XP=xsltproc  \
-#      --nonet \
-#      --param man.charmap.use.subset "0" \
-#      --param make.year.ranges "1" \
-#      --param make.single.year.ranges "1" 
-
-
-build: patch build-stamp
-build-stamp:
-	dh_testdir
-	$(MAKE) -f makefile.unx
-	touch $@
-
-clean: clean-patched unpatch
-clean-patched: patch
-	dh_testdir
-	dh_testroot
-	rm -f build-stamp
-	$(MAKE) -f makefile.unx clean
-	dh_clean boxshade.1
-
-install: build
-	dh_testdir
-	dh_testroot
-	dh_clean -k 
-	dh_installdirs
-
-	mkdir -p $(CURDIR)/debian/boxshade/usr/bin \
-		$(CURDIR)/debian/boxshade/usr/lib/boxshade \
-		$(CURDIR)/debian/boxshade/etc/boxshade || true
-
-	cp boxshade.sh $(CURDIR)/debian/boxshade/usr/bin/boxshade
-	cp boxshade $(CURDIR)/debian/boxshade/usr/lib/boxshade
-	cp *.grp *.par *.sim $(CURDIR)/debian/boxshade/etc/boxshade
-
-
-binary-indep: build install
-binary-arch: build install
-	dh_testdir
-	dh_testroot
-	dh_installchangelogs 
-	dh_installdocs
-	dh_installmenu
-	dh_installman boxshade.1
-	dh_link
-	dh_strip
-	dh_compress
-	dh_fixperms
-	dh_installdeb
-	dh_shlibdeps
-	dh_gencontrol
-	dh_md5sums
-	dh_builddeb
-
-binary: binary-indep binary-arch
-.PHONY: build clean binary-indep binary-arch binary install

Copied: trunk/packages/boxshade/tags/3.3.1-3/rules (from rev 1471, trunk/packages/boxshade/trunk/debian/rules)
===================================================================
--- trunk/packages/boxshade/tags/3.3.1-3/rules	                        (rev 0)
+++ trunk/packages/boxshade/tags/3.3.1-3/rules	2008-02-26 17:48:03 UTC (rev 1472)
@@ -0,0 +1,74 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+# Sample debian/rules that uses debhelper.
+# GNU copyright 1997 to 1999 by Joey Hess.
+
+CFLAGS = -Wall -g
+
+ifneq (,$(findstring noopt,$(DEB_BUILD_OPTIONS)))
+	CFLAGS += -O0
+else
+	CFLAGS += -O2
+endif
+
+include /usr/share/quilt/quilt.make
+
+#XP=xsltproc  \
+#      --nonet \
+#      --param man.charmap.use.subset "0" \
+#      --param make.year.ranges "1" \
+#      --param make.single.year.ranges "1" 
+
+
+build: patch build-stamp
+build-stamp:
+	dh_testdir
+	$(MAKE) -f makefile.unx
+	touch $@
+
+clean: clean-patched unpatch
+clean-patched: patch
+	dh_testdir
+	dh_testroot
+	rm -f build-stamp
+	$(MAKE) -f makefile.unx clean
+	dh_clean boxshade.1
+
+install: build
+	dh_testdir
+	dh_testroot
+	dh_clean -k 
+	dh_installdirs
+
+	mkdir -p $(CURDIR)/debian/boxshade/usr/bin \
+		$(CURDIR)/debian/boxshade/usr/lib/boxshade \
+		$(CURDIR)/debian/boxshade/etc/boxshade || true
+
+	cp debian/boxshade.sh $(CURDIR)/debian/boxshade/usr/bin/boxshade
+	cp boxshade $(CURDIR)/debian/boxshade/usr/lib/boxshade
+	cp *.grp *.par *.sim $(CURDIR)/debian/boxshade/etc/boxshade
+
+
+binary-indep: build install
+binary-arch: build install
+	dh_testdir
+	dh_testroot
+	dh_installchangelogs 
+	dh_installdocs
+	dh_installmenu
+	dh_installman debian/boxshade.1
+	dh_link
+	dh_strip
+	dh_compress
+	dh_fixperms
+	dh_installdeb
+	dh_shlibdeps
+	dh_gencontrol
+	dh_md5sums
+	dh_builddeb
+
+get-orig-source:
+	sh debian/get-orig-source
+
+binary: binary-indep binary-arch
+.PHONY: build clean binary-indep binary-arch binary install




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