[med-svn] r1503 - in trunk/packages: . tree-puzzle tree-puzzle/trunk tree-puzzle/trunk/debian tree-puzzle/trunk/debian/patches
tille at alioth.debian.org
tille at alioth.debian.org
Mon Mar 3 12:41:12 UTC 2008
Author: tille
Date: 2008-03-03 12:41:11 +0000 (Mon, 03 Mar 2008)
New Revision: 1503
Added:
trunk/packages/tree-puzzle/
trunk/packages/tree-puzzle/tags/
trunk/packages/tree-puzzle/trunk/
trunk/packages/tree-puzzle/trunk/debian/
trunk/packages/tree-puzzle/trunk/debian/README.Debian
trunk/packages/tree-puzzle/trunk/debian/changelog
trunk/packages/tree-puzzle/trunk/debian/compat
trunk/packages/tree-puzzle/trunk/debian/control
trunk/packages/tree-puzzle/trunk/debian/copyright
trunk/packages/tree-puzzle/trunk/debian/patches/
trunk/packages/tree-puzzle/trunk/debian/patches/config.guess.diff
trunk/packages/tree-puzzle/trunk/debian/patches/config.sub.diff
trunk/packages/tree-puzzle/trunk/debian/rules
trunk/packages/tree-puzzle/trunk/debian/tree-ppuzzle.1
trunk/packages/tree-puzzle/trunk/debian/tree-ppuzzle.desktop
trunk/packages/tree-puzzle/trunk/debian/tree-ppuzzle.dirs
trunk/packages/tree-puzzle/trunk/debian/tree-ppuzzle.docs
trunk/packages/tree-puzzle/trunk/debian/tree-ppuzzle.install
trunk/packages/tree-puzzle/trunk/debian/tree-ppuzzle.manpages
trunk/packages/tree-puzzle/trunk/debian/tree-ppuzzle.xpm
trunk/packages/tree-puzzle/trunk/debian/tree-puzzle-doc.doc-base
trunk/packages/tree-puzzle/trunk/debian/tree-puzzle-doc.docs
trunk/packages/tree-puzzle/trunk/debian/tree-puzzle-doc.examples
trunk/packages/tree-puzzle/trunk/debian/tree-puzzle.1
trunk/packages/tree-puzzle/trunk/debian/tree-puzzle.desktop
trunk/packages/tree-puzzle/trunk/debian/tree-puzzle.dirs
trunk/packages/tree-puzzle/trunk/debian/tree-puzzle.docs
trunk/packages/tree-puzzle/trunk/debian/tree-puzzle.install
trunk/packages/tree-puzzle/trunk/debian/tree-puzzle.manpages
trunk/packages/tree-puzzle/trunk/debian/tree-puzzle.xpm
trunk/packages/tree-puzzle/trunk/debian/watch
Log:
Tree-puzzle group maintenance
Added: trunk/packages/tree-puzzle/trunk/debian/README.Debian
===================================================================
--- trunk/packages/tree-puzzle/trunk/debian/README.Debian (rev 0)
+++ trunk/packages/tree-puzzle/trunk/debian/README.Debian 2008-03-03 12:41:11 UTC (rev 1503)
@@ -0,0 +1,10 @@
+tree-puzzle for Debian
+----------------------
+
+tree-puzzle replaces the previous package puzzle, since the program was
+renamed by upstream because of a name conflict with another program.
+The command and manpage for tree-puzzle are renamed to tree-puzzle as well!
+
+Now also the parallelized version is packaged in the package tree-ppuzzle.
+
+ -- Andreas Tille <tille at debian.org> Mon, 5 Nov 2001 11:00:04 +0100
Added: trunk/packages/tree-puzzle/trunk/debian/changelog
===================================================================
--- trunk/packages/tree-puzzle/trunk/debian/changelog (rev 0)
+++ trunk/packages/tree-puzzle/trunk/debian/changelog 2008-03-03 12:41:11 UTC (rev 1503)
@@ -0,0 +1,78 @@
+tree-puzzle (5.2-3) unstable; urgency=low
+
+ * Group maintenance according to Debian-Med group policy
+ * Do not auto generate debian/control
+ * Standards-Version: 3.7.3 (no changes needed)
+ * Removed XB-Tag which is not used
+ * Moved Homepage tag from description to control tags
+ * Removed [Biology] from short description
+ * Moved tree-puzzle-doc to section doc
+ * Added watch file
+ * debian/copyright: added Copyright statement
+
+ -- Andreas Tille <tille at debian.org> Sun, 02 Mar 2008 22:21:44 +0100
+
+tree-puzzle (5.2-2) unstable; urgency=low
+
+ * Standards-Version: 3.7.2 (no changes necessary)
+ * Switched to cdbs
+ * Desktop file
+ * DebTags
+ * Build-Depends: lam4-dev to enable building parallelized version
+ * Split into two binary packages (normal and parallelized) version
+ and extra documentation package.
+ * Removed {Provides,Replaces,Conflicts}: puzzle because there is
+ no such package in the thre previous releases an it causes trouble
+ if both versions should be installed
+
+ -- Andreas Tille <tille at debian.org> Sun, 10 Sep 2006 18:13:50 +0200
+
+tree-puzzle (5.2-1) unstable; urgency=low
+
+ * New upstream version
+
+ -- Andreas Tille <tille at debian.org> Thu, 15 Jul 2004 08:23:28 +0200
+
+tree-puzzle (5.1-1) unstable; urgency=low
+
+ * New upstream version
+ * Standards: 3.6.1
+ * Enhanced use of debhelper scripts
+
+ -- Andreas Tille <tille at debian.org> Wed, 14 Jul 2004 10:03:31 +0200
+
+tree-puzzle (5.0-4) unstable; urgency=low
+
+ * The "I'm against war" release
+ Mankind must put an end to war before war puts an end to mankind.
+ -- John F. Kennedy
+ * Standards-Version: 3.5.9
+ * Use debian/compat for debhelper compatibility
+ * Added documentation to doc-base
+ * Use dh_installman instead of dh_installmanpages
+
+ -- Andreas Tille <tille at debian.org> Sat, 26 Apr 2003 15:24:49 +0200
+
+tree-puzzle (5.0-3) unstable; urgency=low
+
+ * New Maintainer
+ closes: #100265
+ * Standards-Version: 3.5.6
+ * Added URL to the package description because I consider this as
+ "good style" to have an upstream link without installing the package.
+ * Provides: puzzle
+
+ -- Andreas Tille <tille at debian.org> Mon, 5 Nov 2001 11:00:04 +0100
+
+tree-puzzle (5.0-2) unstable; urgency=low
+
+ * Maintainer set to Debian QA Group <packages at qa.debian.org>.
+
+ -- Adrian Bunk <bunk at fs.tum.de> Fri, 24 Aug 2001 23:49:12 +0200
+
+tree-puzzle (5.0-1) unstable; urgency=low
+
+ * Initial Release (replaces puzzle).
+ * Wrote a manpage.
+
+ -- Dr. Guenter Bechly <gbechly at debian.org> Sun, 6 May 2001 12:02:07 +0200
Added: trunk/packages/tree-puzzle/trunk/debian/compat
===================================================================
--- trunk/packages/tree-puzzle/trunk/debian/compat (rev 0)
+++ trunk/packages/tree-puzzle/trunk/debian/compat 2008-03-03 12:41:11 UTC (rev 1503)
@@ -0,0 +1 @@
+4
Added: trunk/packages/tree-puzzle/trunk/debian/control
===================================================================
--- trunk/packages/tree-puzzle/trunk/debian/control (rev 0)
+++ trunk/packages/tree-puzzle/trunk/debian/control 2008-03-03 12:41:11 UTC (rev 1503)
@@ -0,0 +1,65 @@
+Source: tree-puzzle
+Section: science
+Priority: optional
+Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: cdbs (>= 0.4.23-1.1), autotools-dev, patchutils (>= 0.2.25), debhelper (>= 4.2.0), debhelper (>= 4.2.21), lam4-dev
+Standards-Version: 3.7.3
+Homepage: http://www.tree-puzzle.de
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/tree-puzzle/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/tree-puzzle/trunk/
+
+Package: tree-puzzle
+Architecture: any
+Depends: ${shlibs:Depends}
+Recommends: tree-puzzle-doc
+Suggests: phylip, treetool
+Description: Reconstruction of phylogenetic trees by maximum likelihood
+ TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that
+ implements a fast tree search algorithm, quartet puzzling, that allows
+ analysis of large data sets and automatically assigns estimations of support
+ to each internal branch. TREE-PUZZLE also computes pairwise maximum
+ likelihood distances as well as branch lengths for user specified trees.
+ Branch lengths can also be calculated under the clock-assumption. In
+ addition, TREE-PUZZLE offers a novel method, likelihood mapping, to
+ investigate the support of a hypothesized internal branch without
+ computing an overall tree and to visualize the phylogenetic content of
+ a sequence alignment.
+
+Package: tree-ppuzzle
+Architecture: any
+Recommends: tree-puzzle-doc
+Depends: ${shlibs:Depends}
+Suggests: phylip, treetool
+Description: Parallelized reconstruction of phylogenetic trees by maximum likelihood
+ TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that
+ implements a fast tree search algorithm, quartet puzzling, that allows
+ analysis of large data sets and automatically assigns estimations of support
+ to each internal branch. TREE-PUZZLE also computes pairwise maximum
+ likelihood distances as well as branch lengths for user specified trees.
+ Branch lengths can also be calculated under the clock-assumption. In
+ addition, TREE-PUZZLE offers a novel method, likelihood mapping, to
+ investigate the support of a hypothesized internal branch without
+ computing an overall tree and to visualize the phylogenetic content of
+ a sequence alignment.
+ .
+ This is the parallelized version of tree-puzzle.
+
+Package: tree-puzzle-doc
+Architecture: all
+Section: doc
+Recommends: tree-puzzle | tree-ppuzzle
+Description: Reconstruction of phylogenetic trees by maximum likelihood
+ TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that
+ implements a fast tree search algorithm, quartet puzzling, that allows
+ analysis of large data sets and automatically assigns estimations of support
+ to each internal branch. TREE-PUZZLE also computes pairwise maximum
+ likelihood distances as well as branch lengths for user specified trees.
+ Branch lengths can also be calculated under the clock-assumption. In
+ addition, TREE-PUZZLE offers a novel method, likelihood mapping, to
+ investigate the support of a hypothesized internal branch without
+ computing an overall tree and to visualize the phylogenetic content of
+ a sequence alignment.
+ .
+ This is the documentation package for tree-puzzle
Added: trunk/packages/tree-puzzle/trunk/debian/copyright
===================================================================
--- trunk/packages/tree-puzzle/trunk/debian/copyright (rev 0)
+++ trunk/packages/tree-puzzle/trunk/debian/copyright 2008-03-03 12:41:11 UTC (rev 1503)
@@ -0,0 +1,54 @@
+This package was debianized by -- Andreas Tille <tille at debian.org> on
+Mon, 5 Nov 2001 11:00:04 +0100
+
+It was downloaded from http://www.tree-puzzle.de
+
+Upstream Authors: Korbinian Strimmer <korbinian.strimmer at zoo.ox.ac.uk>
+ and Arndt von Haeseler <haeseler at eva.mpg.de>.
+
+Copyright 1995-1999 by Korbinian Strimmer and Arndt von Haeseler
+Copyright 1999-2003 by Heiko A. Schmidt, Korbinian Strimmer, Martin Vingron, and Arndt von Haeseler
+Copyright 2003-2004 by Heiko A. Schmidt, Korbinian Strimmer, and Arndt von Haeseler
+
+License:
+ You are free to distribute this software under the terms of
+ the GNU General Public Licence.
+ On Debian systems, the complete text of the GNU General Public
+ Licence can be found in /usr/share/common-licenses/GPL file.
+
+
+A small warning: some files are derived from a work (the book "Numerical
+recipes") for which the authors do not hold the copyright. It does not
+harm:
+
+Date: Mon, 17 May 1999 13:08:31 +0200 (MET DST)
+From: Korbinian Strimmer <strimmer at biochem.mpg.de>
+To: Stephane Bortzmeyer <bortzmeyer at pasteur.fr>
+Cc: Arndt von Haeseler <haeseler at eva.mpg.de>
+Subject: License
+
+[...]
+
+However:
+
+> >The whole package
+> > is licenced under the GNU public licence, except for the parts
+> > indicated in the sources where the copyright of the authors does not
+> > apply.
+>
+> Grepping through the source code, I find no place where there is a
+> copyright other than yours. Do you have the name of the other authors
+> so we can reach them and try to see if they agree with a GPL
+> distribution?
+
+This means that parts of the sources originally derive from
+Numerical Recipes (indicated in the sources). However, I think
+that the code is suffiently modified as not be be generic
+NR code. In addition, we are not making money with the program,
+so probably the whole source can be considered GPL. On the
+other hand, I have not asked NR and I am not a lawyer. For that
+reason the GPL licence covers only part of the sources.
+
+
+ Korbinian
+
Added: trunk/packages/tree-puzzle/trunk/debian/patches/config.guess.diff
===================================================================
--- trunk/packages/tree-puzzle/trunk/debian/patches/config.guess.diff (rev 0)
+++ trunk/packages/tree-puzzle/trunk/debian/patches/config.guess.diff 2008-03-03 12:41:11 UTC (rev 1503)
@@ -0,0 +1,959 @@
+--- config.guess.orig 2001-12-20 02:58:57.000000000 +0100
++++ config.guess 2006-09-10 18:13:09.000000000 +0200
+@@ -1,9 +1,9 @@
+ #! /bin/sh
+ # Attempt to guess a canonical system name.
+-# Copyright (C) 1992, 1993, 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001
+-# Free Software Foundation, Inc.
++# Copyright (C) 1992, 1993, 1994, 1995, 1996, 1997, 1998, 1999,
++# 2000, 2001, 2002, 2003 Free Software Foundation, Inc.
+
+-timestamp='2001-08-21'
++timestamp='2004-03-12'
+
+ # This file is free software; you can redistribute it and/or modify it
+ # under the terms of the GNU General Public License as published by
+@@ -24,8 +24,9 @@
+ # configuration script generated by Autoconf, you may include it under
+ # the same distribution terms that you use for the rest of that program.
+
+-# Written by Per Bothner <bothner at cygnus.com>.
+-# Please send patches to <config-patches at gnu.org>.
++# Originally written by Per Bothner <per at bothner.com>.
++# Please send patches to <config-patches at gnu.org>. Submit a context
++# diff and a properly formatted ChangeLog entry.
+ #
+ # This script attempts to guess a canonical system name similar to
+ # config.sub. If it succeeds, it prints the system name on stdout, and
+@@ -87,30 +88,42 @@
+ exit 1
+ fi
+
++trap 'exit 1' 1 2 15
+
+-dummy=dummy-$$
+-trap 'rm -f $dummy.c $dummy.o $dummy.rel $dummy; exit 1' 1 2 15
++# CC_FOR_BUILD -- compiler used by this script. Note that the use of a
++# compiler to aid in system detection is discouraged as it requires
++# temporary files to be created and, as you can see below, it is a
++# headache to deal with in a portable fashion.
+
+-# CC_FOR_BUILD -- compiler used by this script.
+ # Historically, `CC_FOR_BUILD' used to be named `HOST_CC'. We still
+ # use `HOST_CC' if defined, but it is deprecated.
+
+-set_cc_for_build='case $CC_FOR_BUILD,$HOST_CC,$CC in
+- ,,) echo "int dummy(){}" > $dummy.c ;
+- for c in cc gcc c89 ; do
+- ($c $dummy.c -c -o $dummy.o) >/dev/null 2>&1 ;
+- if test $? = 0 ; then
++# Portable tmp directory creation inspired by the Autoconf team.
++
++set_cc_for_build='
++trap "exitcode=\$?; (rm -f \$tmpfiles 2>/dev/null; rmdir \$tmp 2>/dev/null) && exit \$exitcode" 0 ;
++trap "rm -f \$tmpfiles 2>/dev/null; rmdir \$tmp 2>/dev/null; exit 1" 1 2 13 15 ;
++: ${TMPDIR=/tmp} ;
++ { tmp=`(umask 077 && mktemp -d -q "$TMPDIR/cgXXXXXX") 2>/dev/null` && test -n "$tmp" && test -d "$tmp" ; } ||
++ { test -n "$RANDOM" && tmp=$TMPDIR/cg$$-$RANDOM && (umask 077 && mkdir $tmp) ; } ||
++ { tmp=$TMPDIR/cg-$$ && (umask 077 && mkdir $tmp) && echo "Warning: creating insecure temp directory" >&2 ; } ||
++ { echo "$me: cannot create a temporary directory in $TMPDIR" >&2 ; exit 1 ; } ;
++dummy=$tmp/dummy ;
++tmpfiles="$dummy.c $dummy.o $dummy.rel $dummy" ;
++case $CC_FOR_BUILD,$HOST_CC,$CC in
++ ,,) echo "int x;" > $dummy.c ;
++ for c in cc gcc c89 c99 ; do
++ if ($c -c -o $dummy.o $dummy.c) >/dev/null 2>&1 ; then
+ CC_FOR_BUILD="$c"; break ;
+ fi ;
+ done ;
+- rm -f $dummy.c $dummy.o $dummy.rel ;
+ if test x"$CC_FOR_BUILD" = x ; then
+ CC_FOR_BUILD=no_compiler_found ;
+ fi
+ ;;
+ ,,*) CC_FOR_BUILD=$CC ;;
+ ,*,*) CC_FOR_BUILD=$HOST_CC ;;
+-esac'
++esac ;'
+
+ # This is needed to find uname on a Pyramid OSx when run in the BSD universe.
+ # (ghazi at noc.rutgers.edu 1994-08-24)
+@@ -127,29 +140,30 @@
+
+ case "${UNAME_MACHINE}:${UNAME_SYSTEM}:${UNAME_RELEASE}:${UNAME_VERSION}" in
+ *:NetBSD:*:*)
+- # Netbsd (nbsd) targets should (where applicable) match one or
++ # NetBSD (nbsd) targets should (where applicable) match one or
+ # more of the tupples: *-*-netbsdelf*, *-*-netbsdaout*,
+ # *-*-netbsdecoff* and *-*-netbsd*. For targets that recently
+ # switched to ELF, *-*-netbsd* would select the old
+ # object file format. This provides both forward
+ # compatibility and a consistent mechanism for selecting the
+ # object file format.
+- # Determine the machine/vendor (is the vendor relevant).
+- case "${UNAME_MACHINE}" in
+- amiga) machine=m68k-unknown ;;
+- arm32) machine=arm-unknown ;;
+- atari*) machine=m68k-atari ;;
+- sun3*) machine=m68k-sun ;;
+- mac68k) machine=m68k-apple ;;
+- macppc) machine=powerpc-apple ;;
+- hp3[0-9][05]) machine=m68k-hp ;;
+- ibmrt|romp-ibm) machine=romp-ibm ;;
+- *) machine=${UNAME_MACHINE}-unknown ;;
++ #
++ # Note: NetBSD doesn't particularly care about the vendor
++ # portion of the name. We always set it to "unknown".
++ sysctl="sysctl -n hw.machine_arch"
++ UNAME_MACHINE_ARCH=`(/sbin/$sysctl 2>/dev/null || \
++ /usr/sbin/$sysctl 2>/dev/null || echo unknown)`
++ case "${UNAME_MACHINE_ARCH}" in
++ armeb) machine=armeb-unknown ;;
++ arm*) machine=arm-unknown ;;
++ sh3el) machine=shl-unknown ;;
++ sh3eb) machine=sh-unknown ;;
++ *) machine=${UNAME_MACHINE_ARCH}-unknown ;;
+ esac
+ # The Operating System including object format, if it has switched
+ # to ELF recently, or will in the future.
+- case "${UNAME_MACHINE}" in
+- i386|sparc|amiga|arm*|hp300|mvme68k|vax|atari|luna68k|mac68k|news68k|next68k|pc532|sun3*|x68k)
++ case "${UNAME_MACHINE_ARCH}" in
++ arm*|i386|m68k|ns32k|sh3*|sparc|vax)
+ eval $set_cc_for_build
+ if echo __ELF__ | $CC_FOR_BUILD -E - 2>/dev/null \
+ | grep __ELF__ >/dev/null
+@@ -166,74 +180,135 @@
+ ;;
+ esac
+ # The OS release
++ # Debian GNU/NetBSD machines have a different userland, and
++ # thus, need a distinct triplet. However, they do not need
++ # kernel version information, so it can be replaced with a
++ # suitable tag, in the style of linux-gnu.
++ case "${UNAME_VERSION}" in
++ Debian*)
++ release='-gnu'
++ ;;
++ *)
+ release=`echo ${UNAME_RELEASE}|sed -e 's/[-_].*/\./'`
++ ;;
++ esac
+ # Since CPU_TYPE-MANUFACTURER-KERNEL-OPERATING_SYSTEM:
+ # contains redundant information, the shorter form:
+ # CPU_TYPE-MANUFACTURER-OPERATING_SYSTEM is used.
+ echo "${machine}-${os}${release}"
+ exit 0 ;;
++ amd64:OpenBSD:*:*)
++ echo x86_64-unknown-openbsd${UNAME_RELEASE}
++ exit 0 ;;
++ amiga:OpenBSD:*:*)
++ echo m68k-unknown-openbsd${UNAME_RELEASE}
++ exit 0 ;;
++ arc:OpenBSD:*:*)
++ echo mipsel-unknown-openbsd${UNAME_RELEASE}
++ exit 0 ;;
++ cats:OpenBSD:*:*)
++ echo arm-unknown-openbsd${UNAME_RELEASE}
++ exit 0 ;;
++ hp300:OpenBSD:*:*)
++ echo m68k-unknown-openbsd${UNAME_RELEASE}
++ exit 0 ;;
++ mac68k:OpenBSD:*:*)
++ echo m68k-unknown-openbsd${UNAME_RELEASE}
++ exit 0 ;;
++ macppc:OpenBSD:*:*)
++ echo powerpc-unknown-openbsd${UNAME_RELEASE}
++ exit 0 ;;
++ mvme68k:OpenBSD:*:*)
++ echo m68k-unknown-openbsd${UNAME_RELEASE}
++ exit 0 ;;
++ mvme88k:OpenBSD:*:*)
++ echo m88k-unknown-openbsd${UNAME_RELEASE}
++ exit 0 ;;
++ mvmeppc:OpenBSD:*:*)
++ echo powerpc-unknown-openbsd${UNAME_RELEASE}
++ exit 0 ;;
++ pegasos:OpenBSD:*:*)
++ echo powerpc-unknown-openbsd${UNAME_RELEASE}
++ exit 0 ;;
++ pmax:OpenBSD:*:*)
++ echo mipsel-unknown-openbsd${UNAME_RELEASE}
++ exit 0 ;;
++ sgi:OpenBSD:*:*)
++ echo mipseb-unknown-openbsd${UNAME_RELEASE}
++ exit 0 ;;
++ sun3:OpenBSD:*:*)
++ echo m68k-unknown-openbsd${UNAME_RELEASE}
++ exit 0 ;;
++ wgrisc:OpenBSD:*:*)
++ echo mipsel-unknown-openbsd${UNAME_RELEASE}
++ exit 0 ;;
++ *:OpenBSD:*:*)
++ echo ${UNAME_MACHINE}-unknown-openbsd${UNAME_RELEASE}
++ exit 0 ;;
++ *:ekkoBSD:*:*)
++ echo ${UNAME_MACHINE}-unknown-ekkobsd${UNAME_RELEASE}
++ exit 0 ;;
++ macppc:MirBSD:*:*)
++ echo powerppc-unknown-mirbsd${UNAME_RELEASE}
++ exit 0 ;;
++ *:MirBSD:*:*)
++ echo ${UNAME_MACHINE}-unknown-mirbsd${UNAME_RELEASE}
++ exit 0 ;;
+ alpha:OSF1:*:*)
+- if test $UNAME_RELEASE = "V4.0"; then
++ case $UNAME_RELEASE in
++ *4.0)
+ UNAME_RELEASE=`/usr/sbin/sizer -v | awk '{print $3}'`
+- fi
++ ;;
++ *5.*)
++ UNAME_RELEASE=`/usr/sbin/sizer -v | awk '{print $4}'`
++ ;;
++ esac
++ # According to Compaq, /usr/sbin/psrinfo has been available on
++ # OSF/1 and Tru64 systems produced since 1995. I hope that
++ # covers most systems running today. This code pipes the CPU
++ # types through head -n 1, so we only detect the type of CPU 0.
++ ALPHA_CPU_TYPE=`/usr/sbin/psrinfo -v | sed -n -e 's/^ The alpha \(.*\) processor.*$/\1/p' | head -n 1`
++ case "$ALPHA_CPU_TYPE" in
++ "EV4 (21064)")
++ UNAME_MACHINE="alpha" ;;
++ "EV4.5 (21064)")
++ UNAME_MACHINE="alpha" ;;
++ "LCA4 (21066/21068)")
++ UNAME_MACHINE="alpha" ;;
++ "EV5 (21164)")
++ UNAME_MACHINE="alphaev5" ;;
++ "EV5.6 (21164A)")
++ UNAME_MACHINE="alphaev56" ;;
++ "EV5.6 (21164PC)")
++ UNAME_MACHINE="alphapca56" ;;
++ "EV5.7 (21164PC)")
++ UNAME_MACHINE="alphapca57" ;;
++ "EV6 (21264)")
++ UNAME_MACHINE="alphaev6" ;;
++ "EV6.7 (21264A)")
++ UNAME_MACHINE="alphaev67" ;;
++ "EV6.8CB (21264C)")
++ UNAME_MACHINE="alphaev68" ;;
++ "EV6.8AL (21264B)")
++ UNAME_MACHINE="alphaev68" ;;
++ "EV6.8CX (21264D)")
++ UNAME_MACHINE="alphaev68" ;;
++ "EV6.9A (21264/EV69A)")
++ UNAME_MACHINE="alphaev69" ;;
++ "EV7 (21364)")
++ UNAME_MACHINE="alphaev7" ;;
++ "EV7.9 (21364A)")
++ UNAME_MACHINE="alphaev79" ;;
++ esac
++ # A Pn.n version is a patched version.
+ # A Vn.n version is a released version.
+ # A Tn.n version is a released field test version.
+ # A Xn.n version is an unreleased experimental baselevel.
+ # 1.2 uses "1.2" for uname -r.
+- cat <<EOF >$dummy.s
+- .data
+-\$Lformat:
+- .byte 37,100,45,37,120,10,0 # "%d-%x\n"
+-
+- .text
+- .globl main
+- .align 4
+- .ent main
+-main:
+- .frame \$30,16,\$26,0
+- ldgp \$29,0(\$27)
+- .prologue 1
+- .long 0x47e03d80 # implver \$0
+- lda \$2,-1
+- .long 0x47e20c21 # amask \$2,\$1
+- lda \$16,\$Lformat
+- mov \$0,\$17
+- not \$1,\$18
+- jsr \$26,printf
+- ldgp \$29,0(\$26)
+- mov 0,\$16
+- jsr \$26,exit
+- .end main
+-EOF
+- eval $set_cc_for_build
+- $CC_FOR_BUILD $dummy.s -o $dummy 2>/dev/null
+- if test "$?" = 0 ; then
+- case `./$dummy` in
+- 0-0)
+- UNAME_MACHINE="alpha"
+- ;;
+- 1-0)
+- UNAME_MACHINE="alphaev5"
+- ;;
+- 1-1)
+- UNAME_MACHINE="alphaev56"
+- ;;
+- 1-101)
+- UNAME_MACHINE="alphapca56"
+- ;;
+- 2-303)
+- UNAME_MACHINE="alphaev6"
+- ;;
+- 2-307)
+- UNAME_MACHINE="alphaev67"
+- ;;
+- 2-1307)
+- UNAME_MACHINE="alphaev68"
+- ;;
+- esac
+- fi
+- rm -f $dummy.s $dummy
+- echo ${UNAME_MACHINE}-dec-osf`echo ${UNAME_RELEASE} | sed -e 's/^[VTX]//' | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz'`
++ echo ${UNAME_MACHINE}-dec-osf`echo ${UNAME_RELEASE} | sed -e 's/^[PVTX]//' | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz'`
++ exit 0 ;;
++ Alpha*:OpenVMS:*:*)
++ echo alpha-hp-vms
+ exit 0 ;;
+ Alpha\ *:Windows_NT*:*)
+ # How do we know it's Interix rather than the generic POSIX subsystem?
+@@ -247,33 +322,18 @@
+ Amiga*:UNIX_System_V:4.0:*)
+ echo m68k-unknown-sysv4
+ exit 0;;
+- amiga:OpenBSD:*:*)
+- echo m68k-unknown-openbsd${UNAME_RELEASE}
+- exit 0 ;;
+ *:[Aa]miga[Oo][Ss]:*:*)
+ echo ${UNAME_MACHINE}-unknown-amigaos
+ exit 0 ;;
+- arc64:OpenBSD:*:*)
+- echo mips64el-unknown-openbsd${UNAME_RELEASE}
+- exit 0 ;;
+- arc:OpenBSD:*:*)
+- echo mipsel-unknown-openbsd${UNAME_RELEASE}
+- exit 0 ;;
+- hkmips:OpenBSD:*:*)
+- echo mips-unknown-openbsd${UNAME_RELEASE}
+- exit 0 ;;
+- pmax:OpenBSD:*:*)
+- echo mipsel-unknown-openbsd${UNAME_RELEASE}
+- exit 0 ;;
+- sgi:OpenBSD:*:*)
+- echo mips-unknown-openbsd${UNAME_RELEASE}
+- exit 0 ;;
+- wgrisc:OpenBSD:*:*)
+- echo mipsel-unknown-openbsd${UNAME_RELEASE}
++ *:[Mm]orph[Oo][Ss]:*:*)
++ echo ${UNAME_MACHINE}-unknown-morphos
+ exit 0 ;;
+ *:OS/390:*:*)
+ echo i370-ibm-openedition
+ exit 0 ;;
++ *:OS400:*:*)
++ echo powerpc-ibm-os400
++ exit 0 ;;
+ arm:RISC*:1.[012]*:*|arm:riscix:1.[012]*:*)
+ echo arm-acorn-riscix${UNAME_RELEASE}
+ exit 0;;
+@@ -291,6 +351,13 @@
+ NILE*:*:*:dcosx)
+ echo pyramid-pyramid-svr4
+ exit 0 ;;
++ DRS?6000:unix:4.0:6*)
++ echo sparc-icl-nx6
++ exit 0 ;;
++ DRS?6000:UNIX_SV:4.2*:7*)
++ case `/usr/bin/uname -p` in
++ sparc) echo sparc-icl-nx7 && exit 0 ;;
++ esac ;;
+ sun4H:SunOS:5.*:*)
+ echo sparc-hal-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
+ exit 0 ;;
+@@ -319,7 +386,7 @@
+ echo m68k-sun-sunos${UNAME_RELEASE}
+ exit 0 ;;
+ sun*:*:4.2BSD:*)
+- UNAME_RELEASE=`(head -1 /etc/motd | awk '{print substr($5,1,3)}') 2>/dev/null`
++ UNAME_RELEASE=`(sed 1q /etc/motd | awk '{print substr($5,1,3)}') 2>/dev/null`
+ test "x${UNAME_RELEASE}" = "x" && UNAME_RELEASE=3
+ case "`/bin/arch`" in
+ sun3)
+@@ -333,12 +400,6 @@
+ aushp:SunOS:*:*)
+ echo sparc-auspex-sunos${UNAME_RELEASE}
+ exit 0 ;;
+- sparc*:NetBSD:*)
+- echo `uname -p`-unknown-netbsd${UNAME_RELEASE}
+- exit 0 ;;
+- atari*:OpenBSD:*:*)
+- echo m68k-unknown-openbsd${UNAME_RELEASE}
+- exit 0 ;;
+ # The situation for MiNT is a little confusing. The machine name
+ # can be virtually everything (everything which is not
+ # "atarist" or "atariste" at least should have a processor
+@@ -365,17 +426,8 @@
+ *:*MiNT:*:* | *:*mint:*:* | *:*TOS:*:*)
+ echo m68k-unknown-mint${UNAME_RELEASE}
+ exit 0 ;;
+- sun3*:OpenBSD:*:*)
+- echo m68k-unknown-openbsd${UNAME_RELEASE}
+- exit 0 ;;
+- mac68k:OpenBSD:*:*)
+- echo m68k-unknown-openbsd${UNAME_RELEASE}
+- exit 0 ;;
+- mvme68k:OpenBSD:*:*)
+- echo m68k-unknown-openbsd${UNAME_RELEASE}
+- exit 0 ;;
+- mvme88k:OpenBSD:*:*)
+- echo m88k-unknown-openbsd${UNAME_RELEASE}
++ m68k:machten:*:*)
++ echo m68k-apple-machten${UNAME_RELEASE}
+ exit 0 ;;
+ powerpc:machten:*:*)
+ echo powerpc-apple-machten${UNAME_RELEASE}
+@@ -393,6 +445,7 @@
+ echo clipper-intergraph-clix${UNAME_RELEASE}
+ exit 0 ;;
+ mips:*:*:UMIPS | mips:*:*:RISCos)
++ eval $set_cc_for_build
+ sed 's/^ //' << EOF >$dummy.c
+ #ifdef __cplusplus
+ #include <stdio.h> /* for printf() prototype */
+@@ -414,16 +467,20 @@
+ exit (-1);
+ }
+ EOF
+- eval $set_cc_for_build
+- $CC_FOR_BUILD $dummy.c -o $dummy \
+- && ./$dummy `echo "${UNAME_RELEASE}" | sed -n 's/\([0-9]*\).*/\1/p'` \
+- && rm -f $dummy.c $dummy && exit 0
+- rm -f $dummy.c $dummy
++ $CC_FOR_BUILD -o $dummy $dummy.c \
++ && $dummy `echo "${UNAME_RELEASE}" | sed -n 's/\([0-9]*\).*/\1/p'` \
++ && exit 0
+ echo mips-mips-riscos${UNAME_RELEASE}
+ exit 0 ;;
+ Motorola:PowerMAX_OS:*:*)
+ echo powerpc-motorola-powermax
+ exit 0 ;;
++ Motorola:*:4.3:PL8-*)
++ echo powerpc-harris-powermax
++ exit 0 ;;
++ Night_Hawk:*:*:PowerMAX_OS | Synergy:PowerMAX_OS:*:*)
++ echo powerpc-harris-powermax
++ exit 0 ;;
+ Night_Hawk:Power_UNIX:*:*)
+ echo powerpc-harris-powerunix
+ exit 0 ;;
+@@ -484,6 +541,7 @@
+ exit 0 ;;
+ *:AIX:2:3)
+ if grep bos325 /usr/include/stdio.h >/dev/null 2>&1; then
++ eval $set_cc_for_build
+ sed 's/^ //' << EOF >$dummy.c
+ #include <sys/systemcfg.h>
+
+@@ -495,9 +553,7 @@
+ exit(0);
+ }
+ EOF
+- eval $set_cc_for_build
+- $CC_FOR_BUILD $dummy.c -o $dummy && ./$dummy && rm -f $dummy.c $dummy && exit 0
+- rm -f $dummy.c $dummy
++ $CC_FOR_BUILD -o $dummy $dummy.c && $dummy && exit 0
+ echo rs6000-ibm-aix3.2.5
+ elif grep bos324 /usr/include/stdio.h >/dev/null 2>&1; then
+ echo rs6000-ibm-aix3.2.4
+@@ -506,7 +562,7 @@
+ fi
+ exit 0 ;;
+ *:AIX:*:[45])
+- IBM_CPU_ID=`/usr/sbin/lsdev -C -c processor -S available | head -1 | awk '{ print $1 }'`
++ IBM_CPU_ID=`/usr/sbin/lsdev -C -c processor -S available | sed 1q | awk '{ print $1 }'`
+ if /usr/sbin/lsattr -El ${IBM_CPU_ID} | grep ' POWER' >/dev/null 2>&1; then
+ IBM_ARCH=rs6000
+ else
+@@ -546,8 +602,6 @@
+ 9000/31? ) HP_ARCH=m68000 ;;
+ 9000/[34]?? ) HP_ARCH=m68k ;;
+ 9000/[678][0-9][0-9])
+- case "${HPUX_REV}" in
+- 11.[0-9][0-9])
+ if [ -x /usr/bin/getconf ]; then
+ sc_cpu_version=`/usr/bin/getconf SC_CPU_VERSION 2>/dev/null`
+ sc_kernel_bits=`/usr/bin/getconf SC_KERNEL_BITS 2>/dev/null`
+@@ -558,11 +612,12 @@
+ case "${sc_kernel_bits}" in
+ 32) HP_ARCH="hppa2.0n" ;;
+ 64) HP_ARCH="hppa2.0w" ;;
++ '') HP_ARCH="hppa2.0" ;; # HP-UX 10.20
+ esac ;;
+ esac
+- fi ;;
+- esac
++ fi
+ if [ "${HP_ARCH}" = "" ]; then
++ eval $set_cc_for_build
+ sed 's/^ //' << EOF >$dummy.c
+
+ #define _HPUX_SOURCE
+@@ -596,12 +651,21 @@
+ exit (0);
+ }
+ EOF
+- eval $set_cc_for_build
+- (CCOPTS= $CC_FOR_BUILD $dummy.c -o $dummy 2>/dev/null ) && HP_ARCH=`./$dummy`
+- if test -z "$HP_ARCH"; then HP_ARCH=hppa; fi
+- rm -f $dummy.c $dummy
++ (CCOPTS= $CC_FOR_BUILD -o $dummy $dummy.c 2>/dev/null) && HP_ARCH=`$dummy`
++ test -z "$HP_ARCH" && HP_ARCH=hppa
+ fi ;;
+ esac
++ if [ ${HP_ARCH} = "hppa2.0w" ]
++ then
++ # avoid double evaluation of $set_cc_for_build
++ test -n "$CC_FOR_BUILD" || eval $set_cc_for_build
++ if echo __LP64__ | (CCOPTS= $CC_FOR_BUILD -E -) | grep __LP64__ >/dev/null
++ then
++ HP_ARCH="hppa2.0w"
++ else
++ HP_ARCH="hppa64"
++ fi
++ fi
+ echo ${HP_ARCH}-hp-hpux${HPUX_REV}
+ exit 0 ;;
+ ia64:HP-UX:*:*)
+@@ -609,6 +673,7 @@
+ echo ia64-hp-hpux${HPUX_REV}
+ exit 0 ;;
+ 3050*:HI-UX:*:*)
++ eval $set_cc_for_build
+ sed 's/^ //' << EOF >$dummy.c
+ #include <unistd.h>
+ int
+@@ -634,9 +699,7 @@
+ exit (0);
+ }
+ EOF
+- eval $set_cc_for_build
+- $CC_FOR_BUILD $dummy.c -o $dummy && ./$dummy && rm -f $dummy.c $dummy && exit 0
+- rm -f $dummy.c $dummy
++ $CC_FOR_BUILD -o $dummy $dummy.c && $dummy && exit 0
+ echo unknown-hitachi-hiuxwe2
+ exit 0 ;;
+ 9000/7??:4.3bsd:*:* | 9000/8?[79]:4.3bsd:*:* )
+@@ -664,9 +727,6 @@
+ parisc*:Lites*:*:*)
+ echo hppa1.1-hp-lites
+ exit 0 ;;
+- hppa*:OpenBSD:*:*)
+- echo hppa-unknown-openbsd
+- exit 0 ;;
+ C1*:ConvexOS:*:* | convex:ConvexOS:C1*:*)
+ echo c1-convex-bsd
+ exit 0 ;;
+@@ -685,9 +745,6 @@
+ C4*:ConvexOS:*:* | convex:ConvexOS:C4*:*)
+ echo c4-convex-bsd
+ exit 0 ;;
+- CRAY*X-MP:*:*:*)
+- echo xmp-cray-unicos
+- exit 0 ;;
+ CRAY*Y-MP:*:*:*)
+ echo ymp-cray-unicos${UNAME_RELEASE} | sed -e 's/\.[^.]*$/.X/'
+ exit 0 ;;
+@@ -700,17 +757,14 @@
+ CRAY*TS:*:*:*)
+ echo t90-cray-unicos${UNAME_RELEASE} | sed -e 's/\.[^.]*$/.X/'
+ exit 0 ;;
+- CRAY*T3D:*:*:*)
+- echo alpha-cray-unicosmk${UNAME_RELEASE} | sed -e 's/\.[^.]*$/.X/'
+- exit 0 ;;
+ CRAY*T3E:*:*:*)
+ echo alphaev5-cray-unicosmk${UNAME_RELEASE} | sed -e 's/\.[^.]*$/.X/'
+ exit 0 ;;
+ CRAY*SV1:*:*:*)
+ echo sv1-cray-unicos${UNAME_RELEASE} | sed -e 's/\.[^.]*$/.X/'
+ exit 0 ;;
+- CRAY-2:*:*:*)
+- echo cray2-cray-unicos
++ *:UNICOS/mp:*:*)
++ echo nv1-cray-unicosmp${UNAME_RELEASE} | sed -e 's/\.[^.]*$/.X/'
+ exit 0 ;;
+ F30[01]:UNIX_System_V:*:* | F700:UNIX_System_V:*:*)
+ FUJITSU_PROC=`uname -m | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz'`
+@@ -718,8 +772,10 @@
+ FUJITSU_REL=`echo ${UNAME_RELEASE} | sed -e 's/ /_/'`
+ echo "${FUJITSU_PROC}-fujitsu-${FUJITSU_SYS}${FUJITSU_REL}"
+ exit 0 ;;
+- hp300:OpenBSD:*:*)
+- echo m68k-unknown-openbsd${UNAME_RELEASE}
++ 5000:UNIX_System_V:4.*:*)
++ FUJITSU_SYS=`uname -p | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz' | sed -e 's/\///'`
++ FUJITSU_REL=`echo ${UNAME_RELEASE} | tr 'ABCDEFGHIJKLMNOPQRSTUVWXYZ' 'abcdefghijklmnopqrstuvwxyz' | sed -e 's/ /_/'`
++ echo "sparc-fujitsu-${FUJITSU_SYS}${FUJITSU_REL}"
+ exit 0 ;;
+ i*86:BSD/386:*:* | i*86:BSD/OS:*:* | *:Ascend\ Embedded/OS:*:*)
+ echo ${UNAME_MACHINE}-pc-bsdi${UNAME_RELEASE}
+@@ -731,10 +787,21 @@
+ echo ${UNAME_MACHINE}-unknown-bsdi${UNAME_RELEASE}
+ exit 0 ;;
+ *:FreeBSD:*:*)
+- echo ${UNAME_MACHINE}-unknown-freebsd`echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'`
+- exit 0 ;;
+- *:OpenBSD:*:*)
+- echo ${UNAME_MACHINE}-unknown-openbsd`echo ${UNAME_RELEASE}|sed -e 's/[-_].*/\./'`
++ # Determine whether the default compiler uses glibc.
++ eval $set_cc_for_build
++ sed 's/^ //' << EOF >$dummy.c
++ #include <features.h>
++ #if __GLIBC__ >= 2
++ LIBC=gnu
++ #else
++ LIBC=
++ #endif
++EOF
++ eval `$CC_FOR_BUILD -E $dummy.c 2>/dev/null | grep ^LIBC=`
++ # GNU/KFreeBSD systems have a "k" prefix to indicate we are using
++ # FreeBSD's kernel, but not the complete OS.
++ case ${LIBC} in gnu) kernel_only='k' ;; esac
++ echo ${UNAME_MACHINE}-unknown-${kernel_only}freebsd`echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'`${LIBC:+-$LIBC}
+ exit 0 ;;
+ i*:CYGWIN*:*)
+ echo ${UNAME_MACHINE}-pc-cygwin
+@@ -745,11 +812,17 @@
+ i*:PW*:*)
+ echo ${UNAME_MACHINE}-pc-pw32
+ exit 0 ;;
++ x86:Interix*:[34]*)
++ echo i586-pc-interix${UNAME_RELEASE}|sed -e 's/\..*//'
++ exit 0 ;;
++ [345]86:Windows_95:* | [345]86:Windows_98:* | [345]86:Windows_NT:*)
++ echo i${UNAME_MACHINE}-pc-mks
++ exit 0 ;;
+ i*:Windows_NT*:* | Pentium*:Windows_NT*:*)
+ # How do we know it's Interix rather than the generic POSIX subsystem?
+ # It also conflicts with pre-2.0 versions of AT&T UWIN. Should we
+ # UNAME_MACHINE based on the output of uname instead of i386?
+- echo i386-pc-interix
++ echo i586-pc-interix
+ exit 0 ;;
+ i*:UWIN*:*)
+ echo ${UNAME_MACHINE}-pc-uwin
+@@ -761,25 +834,68 @@
+ echo powerpcle-unknown-solaris2`echo ${UNAME_RELEASE}|sed -e 's/[^.]*//'`
+ exit 0 ;;
+ *:GNU:*:*)
++ # the GNU system
+ echo `echo ${UNAME_MACHINE}|sed -e 's,[-/].*$,,'`-unknown-gnu`echo ${UNAME_RELEASE}|sed -e 's,/.*$,,'`
+ exit 0 ;;
++ *:GNU/*:*:*)
++ # other systems with GNU libc and userland
++ echo ${UNAME_MACHINE}-unknown-`echo ${UNAME_SYSTEM} | sed 's,^[^/]*/,,' | tr '[A-Z]' '[a-z]'``echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'`-gnu
++ exit 0 ;;
+ i*86:Minix:*:*)
+ echo ${UNAME_MACHINE}-pc-minix
+ exit 0 ;;
+ arm*:Linux:*:*)
+ echo ${UNAME_MACHINE}-unknown-linux-gnu
+ exit 0 ;;
++ cris:Linux:*:*)
++ echo cris-axis-linux-gnu
++ exit 0 ;;
+ ia64:Linux:*:*)
+- echo ${UNAME_MACHINE}-unknown-linux
++ echo ${UNAME_MACHINE}-unknown-linux-gnu
++ exit 0 ;;
++ m32r*:Linux:*:*)
++ echo ${UNAME_MACHINE}-unknown-linux-gnu
+ exit 0 ;;
+ m68*:Linux:*:*)
+ echo ${UNAME_MACHINE}-unknown-linux-gnu
+ exit 0 ;;
+ mips:Linux:*:*)
+- case `sed -n '/^byte/s/^.*: \(.*\) endian/\1/p' < /proc/cpuinfo` in
+- big) echo mips-unknown-linux-gnu && exit 0 ;;
+- little) echo mipsel-unknown-linux-gnu && exit 0 ;;
+- esac
++ eval $set_cc_for_build
++ sed 's/^ //' << EOF >$dummy.c
++ #undef CPU
++ #undef mips
++ #undef mipsel
++ #if defined(__MIPSEL__) || defined(__MIPSEL) || defined(_MIPSEL) || defined(MIPSEL)
++ CPU=mipsel
++ #else
++ #if defined(__MIPSEB__) || defined(__MIPSEB) || defined(_MIPSEB) || defined(MIPSEB)
++ CPU=mips
++ #else
++ CPU=
++ #endif
++ #endif
++EOF
++ eval `$CC_FOR_BUILD -E $dummy.c 2>/dev/null | grep ^CPU=`
++ test x"${CPU}" != x && echo "${CPU}-unknown-linux-gnu" && exit 0
++ ;;
++ mips64:Linux:*:*)
++ eval $set_cc_for_build
++ sed 's/^ //' << EOF >$dummy.c
++ #undef CPU
++ #undef mips64
++ #undef mips64el
++ #if defined(__MIPSEL__) || defined(__MIPSEL) || defined(_MIPSEL) || defined(MIPSEL)
++ CPU=mips64el
++ #else
++ #if defined(__MIPSEB__) || defined(__MIPSEB) || defined(_MIPSEB) || defined(MIPSEB)
++ CPU=mips64
++ #else
++ CPU=
++ #endif
++ #endif
++EOF
++ eval `$CC_FOR_BUILD -E $dummy.c 2>/dev/null | grep ^CPU=`
++ test x"${CPU}" != x && echo "${CPU}-unknown-linux-gnu" && exit 0
+ ;;
+ ppc:Linux:*:*)
+ echo powerpc-unknown-linux-gnu
+@@ -815,6 +931,9 @@
+ s390:Linux:*:* | s390x:Linux:*:*)
+ echo ${UNAME_MACHINE}-ibm-linux
+ exit 0 ;;
++ sh64*:Linux:*:*)
++ echo ${UNAME_MACHINE}-unknown-linux-gnu
++ exit 0 ;;
+ sh*:Linux:*:*)
+ echo ${UNAME_MACHINE}-unknown-linux-gnu
+ exit 0 ;;
+@@ -828,7 +947,8 @@
+ # The BFD linker knows what the default object file format is, so
+ # first see if it will tell us. cd to the root directory to prevent
+ # problems with other programs or directories called `ld' in the path.
+- ld_supported_targets=`cd /; ld --help 2>&1 \
++ # Set LC_ALL=C to ensure ld outputs messages in English.
++ ld_supported_targets=`cd /; LC_ALL=C ld --help 2>&1 \
+ | sed -ne '/supported targets:/!d
+ s/[ ][ ]*/ /g
+ s/.*supported targets: *//
+@@ -851,33 +971,32 @@
+ exit 0 ;;
+ esac
+ # Determine whether the default compiler is a.out or elf
+- cat >$dummy.c <<EOF
+-#include <features.h>
+-#ifdef __cplusplus
+-#include <stdio.h> /* for printf() prototype */
+- int main (int argc, char *argv[]) {
+-#else
+- int main (argc, argv) int argc; char *argv[]; {
+-#endif
+-#ifdef __ELF__
+-# ifdef __GLIBC__
+-# if __GLIBC__ >= 2
+- printf ("%s-pc-linux-gnu\n", argv[1]);
+-# else
+- printf ("%s-pc-linux-gnulibc1\n", argv[1]);
+-# endif
+-# else
+- printf ("%s-pc-linux-gnulibc1\n", argv[1]);
+-# endif
+-#else
+- printf ("%s-pc-linux-gnuaout\n", argv[1]);
+-#endif
+- return 0;
+-}
+-EOF
+ eval $set_cc_for_build
+- $CC_FOR_BUILD $dummy.c -o $dummy 2>/dev/null && ./$dummy "${UNAME_MACHINE}" && rm -f $dummy.c $dummy && exit 0
+- rm -f $dummy.c $dummy
++ sed 's/^ //' << EOF >$dummy.c
++ #include <features.h>
++ #ifdef __ELF__
++ # ifdef __GLIBC__
++ # if __GLIBC__ >= 2
++ LIBC=gnu
++ # else
++ LIBC=gnulibc1
++ # endif
++ # else
++ LIBC=gnulibc1
++ # endif
++ #else
++ #ifdef __INTEL_COMPILER
++ LIBC=gnu
++ #else
++ LIBC=gnuaout
++ #endif
++ #endif
++ #ifdef __dietlibc__
++ LIBC=dietlibc
++ #endif
++EOF
++ eval `$CC_FOR_BUILD -E $dummy.c 2>/dev/null | grep ^LIBC=`
++ test x"${LIBC}" != x && echo "${UNAME_MACHINE}-pc-linux-${LIBC}" && exit 0
+ test x"${TENTATIVE}" != x && echo "${TENTATIVE}" && exit 0
+ ;;
+ i*86:DYNIX/ptx:4*:*)
+@@ -894,6 +1013,26 @@
+ # Use sysv4.2uw... so that sysv4* matches it.
+ echo ${UNAME_MACHINE}-pc-sysv4.2uw${UNAME_VERSION}
+ exit 0 ;;
++ i*86:OS/2:*:*)
++ # If we were able to find `uname', then EMX Unix compatibility
++ # is probably installed.
++ echo ${UNAME_MACHINE}-pc-os2-emx
++ exit 0 ;;
++ i*86:XTS-300:*:STOP)
++ echo ${UNAME_MACHINE}-unknown-stop
++ exit 0 ;;
++ i*86:atheos:*:*)
++ echo ${UNAME_MACHINE}-unknown-atheos
++ exit 0 ;;
++ i*86:syllable:*:*)
++ echo ${UNAME_MACHINE}-pc-syllable
++ exit 0 ;;
++ i*86:LynxOS:2.*:* | i*86:LynxOS:3.[01]*:* | i*86:LynxOS:4.0*:*)
++ echo i386-unknown-lynxos${UNAME_RELEASE}
++ exit 0 ;;
++ i*86:*DOS:*:*)
++ echo ${UNAME_MACHINE}-pc-msdosdjgpp
++ exit 0 ;;
+ i*86:*:4.*:* | i*86:SYSTEM_V:4.*:*)
+ UNAME_REL=`echo ${UNAME_RELEASE} | sed 's/\/MP$//'`
+ if grep Novell /usr/include/link.h >/dev/null 2>/dev/null; then
+@@ -915,22 +1054,19 @@
+ UNAME_REL=`sed -n 's/.*Version //p' </usr/options/cb.name`
+ echo ${UNAME_MACHINE}-pc-isc$UNAME_REL
+ elif /bin/uname -X 2>/dev/null >/dev/null ; then
+- UNAME_REL=`(/bin/uname -X|egrep Release|sed -e 's/.*= //')`
+- (/bin/uname -X|egrep i80486 >/dev/null) && UNAME_MACHINE=i486
+- (/bin/uname -X|egrep '^Machine.*Pentium' >/dev/null) \
++ UNAME_REL=`(/bin/uname -X|grep Release|sed -e 's/.*= //')`
++ (/bin/uname -X|grep i80486 >/dev/null) && UNAME_MACHINE=i486
++ (/bin/uname -X|grep '^Machine.*Pentium' >/dev/null) \
+ && UNAME_MACHINE=i586
+- (/bin/uname -X|egrep '^Machine.*Pent ?II' >/dev/null) \
++ (/bin/uname -X|grep '^Machine.*Pent *II' >/dev/null) \
+ && UNAME_MACHINE=i686
+- (/bin/uname -X|egrep '^Machine.*Pentium Pro' >/dev/null) \
++ (/bin/uname -X|grep '^Machine.*Pentium Pro' >/dev/null) \
+ && UNAME_MACHINE=i686
+ echo ${UNAME_MACHINE}-pc-sco$UNAME_REL
+ else
+ echo ${UNAME_MACHINE}-pc-sysv32
+ fi
+ exit 0 ;;
+- i*86:*DOS:*:*)
+- echo ${UNAME_MACHINE}-pc-msdosdjgpp
+- exit 0 ;;
+ pc:*:*:*)
+ # Left here for compatibility:
+ # uname -m prints for DJGPP always 'pc', but it prints nothing about
+@@ -954,9 +1090,15 @@
+ # "miniframe"
+ echo m68010-convergent-sysv
+ exit 0 ;;
++ mc68k:UNIX:SYSTEM5:3.51m)
++ echo m68k-convergent-sysv
++ exit 0 ;;
++ M680?0:D-NIX:5.3:*)
++ echo m68k-diab-dnix
++ exit 0 ;;
+ M68*:*:R3V[567]*:*)
+ test -r /sysV68 && echo 'm68k-motorola-sysv' && exit 0 ;;
+- 3[34]??:*:4.0:3.0 | 3[34]??A:*:4.0:3.0 | 3[34]??,*:*:4.0:3.0 | 4850:*:4.0:3.0)
++ 3[345]??:*:4.0:3.0 | 3[34]??A:*:4.0:3.0 | 3[34]??,*:*:4.0:3.0 | 3[34]??/*:*:4.0:3.0 | 4400:*:4.0:3.0 | 4850:*:4.0:3.0 | SKA40:*:4.0:3.0 | SDS2:*:4.0:3.0 | SHG2:*:4.0:3.0)
+ OS_REL=''
+ test -r /etc/.relid \
+ && OS_REL=.`sed -n 's/[^ ]* [^ ]* \([0-9][0-9]\).*/\1/p' < /etc/.relid`
+@@ -973,9 +1115,6 @@
+ mc68030:UNIX_System_V:4.*:*)
+ echo m68k-atari-sysv4
+ exit 0 ;;
+- i*86:LynxOS:2.*:* | i*86:LynxOS:3.[01]*:* | i*86:LynxOS:4.0*:*)
+- echo i386-unknown-lynxos${UNAME_RELEASE}
+- exit 0 ;;
+ TSUNAMI:LynxOS:2.*:*)
+ echo sparc-unknown-lynxos${UNAME_RELEASE}
+ exit 0 ;;
+@@ -1047,6 +1186,9 @@
+ SX-5:SUPER-UX:*:*)
+ echo sx5-nec-superux${UNAME_RELEASE}
+ exit 0 ;;
++ SX-6:SUPER-UX:*:*)
++ echo sx6-nec-superux${UNAME_RELEASE}
++ exit 0 ;;
+ Power*:Rhapsody:*:*)
+ echo powerpc-apple-rhapsody${UNAME_RELEASE}
+ exit 0 ;;
+@@ -1054,18 +1196,24 @@
+ echo ${UNAME_MACHINE}-apple-rhapsody${UNAME_RELEASE}
+ exit 0 ;;
+ *:Darwin:*:*)
+- echo `uname -p`-apple-darwin${UNAME_RELEASE}
++ case `uname -p` in
++ *86) UNAME_PROCESSOR=i686 ;;
++ powerpc) UNAME_PROCESSOR=powerpc ;;
++ esac
++ echo ${UNAME_PROCESSOR}-apple-darwin${UNAME_RELEASE}
+ exit 0 ;;
+ *:procnto*:*:* | *:QNX:[0123456789]*:*)
+- if test "${UNAME_MACHINE}" = "x86pc"; then
++ UNAME_PROCESSOR=`uname -p`
++ if test "$UNAME_PROCESSOR" = "x86"; then
++ UNAME_PROCESSOR=i386
+ UNAME_MACHINE=pc
+ fi
+- echo `uname -p`-${UNAME_MACHINE}-nto-qnx
++ echo ${UNAME_PROCESSOR}-${UNAME_MACHINE}-nto-qnx${UNAME_RELEASE}
+ exit 0 ;;
+ *:QNX:*:4*)
+ echo i386-pc-qnx
+ exit 0 ;;
+- NSR-[KW]:NONSTOP_KERNEL:*:*)
++ NSR-?:NONSTOP_KERNEL:*:*)
+ echo nsr-tandem-nsk${UNAME_RELEASE}
+ exit 0 ;;
+ *:NonStop-UX:*:*)
+@@ -1088,11 +1236,6 @@
+ fi
+ echo ${UNAME_MACHINE}-unknown-plan9
+ exit 0 ;;
+- i*86:OS/2:*:*)
+- # If we were able to find `uname', then EMX Unix compatibility
+- # is probably installed.
+- echo ${UNAME_MACHINE}-pc-os2-emx
+- exit 0 ;;
+ *:TOPS-10:*:*)
+ echo pdp10-unknown-tops10
+ exit 0 ;;
+@@ -1111,14 +1254,18 @@
+ *:ITS:*:*)
+ echo pdp10-unknown-its
+ exit 0 ;;
+- i*86:XTS-300:*:STOP)
+- echo ${UNAME_MACHINE}-unknown-stop
++ SEI:*:*:SEIUX)
++ echo mips-sei-seiux${UNAME_RELEASE}
++ exit 0 ;;
++ *:DragonFly:*:*)
++ echo ${UNAME_MACHINE}-unknown-dragonfly`echo ${UNAME_RELEASE}|sed -e 's/[-(].*//'`
+ exit 0 ;;
+ esac
+
+ #echo '(No uname command or uname output not recognized.)' 1>&2
+ #echo "${UNAME_MACHINE}:${UNAME_SYSTEM}:${UNAME_RELEASE}:${UNAME_VERSION}" 1>&2
+
++eval $set_cc_for_build
+ cat >$dummy.c <<EOF
+ #ifdef _SEQUENT_
+ # include <sys/types.h>
+@@ -1233,9 +1380,7 @@
+ }
+ EOF
+
+-eval $set_cc_for_build
+-$CC_FOR_BUILD $dummy.c -o $dummy 2>/dev/null && ./$dummy && rm -f $dummy.c $dummy && exit 0
+-rm -f $dummy.c $dummy
++$CC_FOR_BUILD -o $dummy $dummy.c 2>/dev/null && $dummy && exit 0
+
+ # Apollos put the system type in the environment.
+
Added: trunk/packages/tree-puzzle/trunk/debian/patches/config.sub.diff
===================================================================
--- trunk/packages/tree-puzzle/trunk/debian/patches/config.sub.diff (rev 0)
+++ trunk/packages/tree-puzzle/trunk/debian/patches/config.sub.diff 2008-03-03 12:41:11 UTC (rev 1503)
@@ -0,0 +1,631 @@
+--- config.sub.orig 2001-12-20 02:58:57.000000000 +0100
++++ config.sub 2006-09-10 18:13:09.000000000 +0200
+@@ -1,9 +1,9 @@
+ #! /bin/sh
+ # Configuration validation subroutine script.
+-# Copyright (C) 1992, 1993, 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001
+-# Free Software Foundation, Inc.
++# Copyright (C) 1992, 1993, 1994, 1995, 1996, 1997, 1998, 1999,
++# 2000, 2001, 2002, 2003 Free Software Foundation, Inc.
+
+-timestamp='2001-08-13'
++timestamp='2004-03-12'
+
+ # This file is (in principle) common to ALL GNU software.
+ # The presence of a machine in this file suggests that SOME GNU software
+@@ -29,7 +29,8 @@
+ # configuration script generated by Autoconf, you may include it under
+ # the same distribution terms that you use for the rest of that program.
+
+-# Please send patches to <config-patches at gnu.org>.
++# Please send patches to <config-patches at gnu.org>. Submit a context
++# diff and a properly formatted ChangeLog entry.
+ #
+ # Configuration subroutine to validate and canonicalize a configuration type.
+ # Supply the specified configuration type as an argument.
+@@ -117,7 +118,8 @@
+ # Here we must recognize all the valid KERNEL-OS combinations.
+ maybe_os=`echo $1 | sed 's/^\(.*\)-\([^-]*-[^-]*\)$/\2/'`
+ case $maybe_os in
+- nto-qnx* | linux-gnu* | storm-chaos* | os2-emx* | windows32-*)
++ nto-qnx* | linux-gnu* | linux-dietlibc | linux-uclibc* | uclinux-uclibc* | uclinux-gnu* | \
++ kfreebsd*-gnu* | knetbsd*-gnu* | netbsd*-gnu* | storm-chaos* | os2-emx* | rtmk-nova*)
+ os=-$maybe_os
+ basic_machine=`echo $1 | sed 's/^\(.*\)-\([^-]*-[^-]*\)$/\1/'`
+ ;;
+@@ -226,31 +228,46 @@
+ 1750a | 580 \
+ | a29k \
+ | alpha | alphaev[4-8] | alphaev56 | alphaev6[78] | alphapca5[67] \
++ | alpha64 | alpha64ev[4-8] | alpha64ev56 | alpha64ev6[78] | alpha64pca5[67] \
++ | am33_2.0 \
+ | arc | arm | arm[bl]e | arme[lb] | armv[2345] | armv[345][lb] | avr \
+ | c4x | clipper \
+- | d10v | d30v | dsp16xx \
+- | fr30 \
++ | d10v | d30v | dlx | dsp16xx \
++ | fr30 | frv \
+ | h8300 | h8500 | hppa | hppa1.[01] | hppa2.0 | hppa2.0[nw] | hppa64 \
+ | i370 | i860 | i960 | ia64 \
+- | m32r | m68000 | m68k | m88k | mcore \
+- | mips16 | mips64 | mips64el | mips64orion | mips64orionel \
+- | mips64vr4100 | mips64vr4100el | mips64vr4300 \
+- | mips64vr4300el | mips64vr5000 | mips64vr5000el \
+- | mipsbe | mipsel | mipsle | mipstx39 | mipstx39el \
++ | ip2k | iq2000 \
++ | m32r | m32rle | m68000 | m68k | m88k | mcore \
++ | mips | mipsbe | mipseb | mipsel | mipsle \
++ | mips16 \
++ | mips64 | mips64el \
++ | mips64vr | mips64vrel \
++ | mips64orion | mips64orionel \
++ | mips64vr4100 | mips64vr4100el \
++ | mips64vr4300 | mips64vr4300el \
++ | mips64vr5000 | mips64vr5000el \
++ | mipsisa32 | mipsisa32el \
++ | mipsisa32r2 | mipsisa32r2el \
++ | mipsisa64 | mipsisa64el \
++ | mipsisa64r2 | mipsisa64r2el \
++ | mipsisa64sb1 | mipsisa64sb1el \
++ | mipsisa64sr71k | mipsisa64sr71kel \
++ | mipstx39 | mipstx39el \
+ | mn10200 | mn10300 \
++ | msp430 \
+ | ns16k | ns32k \
+- | openrisc \
++ | openrisc | or32 \
+ | pdp10 | pdp11 | pj | pjl \
+ | powerpc | powerpc64 | powerpc64le | powerpcle | ppcbe \
+ | pyramid \
+- | s390 | s390x \
+- | sh | sh[34] | sh[34]eb | shbe | shle \
+- | sparc | sparc64 | sparclet | sparclite | sparcv9 | sparcv9b \
++ | sh | sh[1234] | sh[23]e | sh[34]eb | shbe | shle | sh[1234]le | sh3ele \
++ | sh64 | sh64le \
++ | sparc | sparc64 | sparc86x | sparclet | sparclite | sparcv8 | sparcv9 | sparcv9b \
+ | strongarm \
+- | tahoe | thumb | tic80 | tron \
+- | v850 \
++ | tahoe | thumb | tic4x | tic80 | tron \
++ | v850 | v850e \
+ | we32k \
+- | x86 | xscale \
++ | x86 | xscale | xstormy16 | xtensa \
+ | z8k)
+ basic_machine=$basic_machine-unknown
+ ;;
+@@ -277,38 +294,56 @@
+ 580-* \
+ | a29k-* \
+ | alpha-* | alphaev[4-8]-* | alphaev56-* | alphaev6[78]-* \
+- | alphapca5[67]-* | arc-* \
+- | arm-* | armbe-* | armle-* | armv*-* \
++ | alpha64-* | alpha64ev[4-8]-* | alpha64ev56-* | alpha64ev6[78]-* \
++ | alphapca5[67]-* | alpha64pca5[67]-* | arc-* \
++ | arm-* | armbe-* | armle-* | armeb-* | armv*-* \
++ | avr-* \
+ | bs2000-* \
+- | c[123]* | c30-* | [cjt]90-* | c54x-* \
+- | clipper-* | cray2-* | cydra-* \
+- | d10v-* | d30v-* \
++ | c[123]* | c30-* | [cjt]90-* | c4x-* | c54x-* | c55x-* | c6x-* \
++ | clipper-* | cydra-* \
++ | d10v-* | d30v-* | dlx-* \
+ | elxsi-* \
+- | f30[01]-* | f700-* | fr30-* | fx80-* \
++ | f30[01]-* | f700-* | fr30-* | frv-* | fx80-* \
+ | h8300-* | h8500-* \
+ | hppa-* | hppa1.[01]-* | hppa2.0-* | hppa2.0[nw]-* | hppa64-* \
+ | i*86-* | i860-* | i960-* | ia64-* \
+- | m32r-* \
+- | m68000-* | m680[01234]0-* | m68360-* | m683?2-* | m68k-* \
++ | ip2k-* | iq2000-* \
++ | m32r-* | m32rle-* \
++ | m68000-* | m680[012346]0-* | m68360-* | m683?2-* | m68k-* \
+ | m88110-* | m88k-* | mcore-* \
+- | mips-* | mips16-* | mips64-* | mips64el-* | mips64orion-* \
+- | mips64orionel-* | mips64vr4100-* | mips64vr4100el-* \
+- | mips64vr4300-* | mips64vr4300el-* | mipsbe-* | mipsel-* \
+- | mipsle-* | mipstx39-* | mipstx39el-* \
+- | none-* | np1-* | ns16k-* | ns32k-* \
++ | mips-* | mipsbe-* | mipseb-* | mipsel-* | mipsle-* \
++ | mips16-* \
++ | mips64-* | mips64el-* \
++ | mips64vr-* | mips64vrel-* \
++ | mips64orion-* | mips64orionel-* \
++ | mips64vr4100-* | mips64vr4100el-* \
++ | mips64vr4300-* | mips64vr4300el-* \
++ | mips64vr5000-* | mips64vr5000el-* \
++ | mipsisa32-* | mipsisa32el-* \
++ | mipsisa32r2-* | mipsisa32r2el-* \
++ | mipsisa64-* | mipsisa64el-* \
++ | mipsisa64r2-* | mipsisa64r2el-* \
++ | mipsisa64sb1-* | mipsisa64sb1el-* \
++ | mipsisa64sr71k-* | mipsisa64sr71kel-* \
++ | mipstx39-* | mipstx39el-* \
++ | msp430-* \
++ | none-* | np1-* | nv1-* | ns16k-* | ns32k-* \
+ | orion-* \
+ | pdp10-* | pdp11-* | pj-* | pjl-* | pn-* | power-* \
+ | powerpc-* | powerpc64-* | powerpc64le-* | powerpcle-* | ppcbe-* \
+ | pyramid-* \
+ | romp-* | rs6000-* \
+- | s390-* | s390x-* \
+- | sh-* | sh[34]-* | sh[34]eb-* | shbe-* | shle-* \
+- | sparc-* | sparc64-* | sparc86x-* | sparclite-* \
+- | sparcv9-* | sparcv9b-* | strongarm-* | sv1-* \
+- | t3e-* | tahoe-* | thumb-* | tic30-* | tic54x-* | tic80-* | tron-* \
+- | v850-* | vax-* \
++ | sh-* | sh[1234]-* | sh[23]e-* | sh[34]eb-* | shbe-* \
++ | shle-* | sh[1234]le-* | sh3ele-* | sh64-* | sh64le-* \
++ | sparc-* | sparc64-* | sparc86x-* | sparclet-* | sparclite-* \
++ | sparcv8-* | sparcv9-* | sparcv9b-* | strongarm-* | sv1-* | sx?-* \
++ | tahoe-* | thumb-* \
++ | tic30-* | tic4x-* | tic54x-* | tic55x-* | tic6x-* | tic80-* \
++ | tron-* \
++ | v850-* | v850e-* | vax-* \
+ | we32k-* \
+- | x86-* | x86_64-* | xmp-* | xps100-* | xscale-* \
++ | x86-* | x86_64-* | xps100-* | xscale-* | xstormy16-* \
++ | xtensa-* \
+ | ymp-* \
+ | z8k-*)
+ ;;
+@@ -328,6 +363,9 @@
+ basic_machine=a29k-amd
+ os=-udi
+ ;;
++ abacus)
++ basic_machine=abacus-unknown
++ ;;
+ adobe68k)
+ basic_machine=m68010-adobe
+ os=-scout
+@@ -342,6 +380,12 @@
+ basic_machine=a29k-none
+ os=-bsd
+ ;;
++ amd64)
++ basic_machine=x86_64-pc
++ ;;
++ amd64-*)
++ basic_machine=x86_64-`echo $basic_machine | sed 's/^[^-]*-//'`
++ ;;
+ amdahl)
+ basic_machine=580-amdahl
+ os=-sysv
+@@ -373,6 +417,10 @@
+ basic_machine=ns32k-sequent
+ os=-dynix
+ ;;
++ c90)
++ basic_machine=c90-cray
++ os=-unicos
++ ;;
+ convex-c1)
+ basic_machine=c1-convex
+ os=-bsd
+@@ -393,17 +441,13 @@
+ basic_machine=c38-convex
+ os=-bsd
+ ;;
+- cray | ymp)
+- basic_machine=ymp-cray
+- os=-unicos
+- ;;
+- cray2)
+- basic_machine=cray2-cray
++ cray | j90)
++ basic_machine=j90-cray
+ os=-unicos
+ ;;
+- [cjt]90)
+- basic_machine=${basic_machine}-cray
+- os=-unicos
++ cr16c)
++ basic_machine=cr16c-unknown
++ os=-elf
+ ;;
+ crds | unos)
+ basic_machine=m68k-crds
+@@ -411,12 +455,24 @@
+ cris | cris-* | etrax*)
+ basic_machine=cris-axis
+ ;;
++ crx)
++ basic_machine=crx-unknown
++ os=-elf
++ ;;
+ da30 | da30-*)
+ basic_machine=m68k-da30
+ ;;
+ decstation | decstation-3100 | pmax | pmax-* | pmin | dec3100 | decstatn)
+ basic_machine=mips-dec
+ ;;
++ decsystem10* | dec10*)
++ basic_machine=pdp10-dec
++ os=-tops10
++ ;;
++ decsystem20* | dec20*)
++ basic_machine=pdp10-dec
++ os=-tops20
++ ;;
+ delta | 3300 | motorola-3300 | motorola-delta \
+ | 3300-motorola | delta-motorola)
+ basic_machine=m68k-motorola
+@@ -597,14 +653,6 @@
+ basic_machine=m68k-atari
+ os=-mint
+ ;;
+- mipsel*-linux*)
+- basic_machine=mipsel-unknown
+- os=-linux-gnu
+- ;;
+- mips*-linux*)
+- basic_machine=mips-unknown
+- os=-linux-gnu
+- ;;
+ mips3*-*)
+ basic_machine=`echo $basic_machine | sed -e 's/mips3/mips64/'`
+ ;;
+@@ -619,6 +667,10 @@
+ basic_machine=m68k-rom68k
+ os=-coff
+ ;;
++ morphos)
++ basic_machine=powerpc-unknown
++ os=-morphos
++ ;;
+ msdos)
+ basic_machine=i386-pc
+ os=-msdos
+@@ -691,6 +743,10 @@
+ np1)
+ basic_machine=np1-gould
+ ;;
++ nv1)
++ basic_machine=nv1-cray
++ os=-unicosmp
++ ;;
+ nsr-tandem)
+ basic_machine=nsr-tandem
+ ;;
+@@ -698,6 +754,14 @@
+ basic_machine=hppa1.1-oki
+ os=-proelf
+ ;;
++ or32 | or32-*)
++ basic_machine=or32-unknown
++ os=-coff
++ ;;
++ os400)
++ basic_machine=powerpc-ibm
++ os=-os400
++ ;;
+ OSE68000 | ose68000)
+ basic_machine=m68000-ericsson
+ os=-ose
+@@ -723,24 +787,30 @@
+ pc532 | pc532-*)
+ basic_machine=ns32k-pc532
+ ;;
+- pentium | p5 | k5 | k6 | nexgen)
++ pentium | p5 | k5 | k6 | nexgen | viac3)
+ basic_machine=i586-pc
+ ;;
+- pentiumpro | p6 | 6x86 | athlon)
++ pentiumpro | p6 | 6x86 | athlon | athlon_*)
+ basic_machine=i686-pc
+ ;;
+- pentiumii | pentium2)
++ pentiumii | pentium2 | pentiumiii | pentium3)
+ basic_machine=i686-pc
+ ;;
+- pentium-* | p5-* | k5-* | k6-* | nexgen-*)
++ pentium4)
++ basic_machine=i786-pc
++ ;;
++ pentium-* | p5-* | k5-* | k6-* | nexgen-* | viac3-*)
+ basic_machine=i586-`echo $basic_machine | sed 's/^[^-]*-//'`
+ ;;
+ pentiumpro-* | p6-* | 6x86-* | athlon-*)
+ basic_machine=i686-`echo $basic_machine | sed 's/^[^-]*-//'`
+ ;;
+- pentiumii-* | pentium2-*)
++ pentiumii-* | pentium2-* | pentiumiii-* | pentium3-*)
+ basic_machine=i686-`echo $basic_machine | sed 's/^[^-]*-//'`
+ ;;
++ pentium4-*)
++ basic_machine=i786-`echo $basic_machine | sed 's/^[^-]*-//'`
++ ;;
+ pn)
+ basic_machine=pn-gould
+ ;;
+@@ -783,10 +853,26 @@
+ rtpc | rtpc-*)
+ basic_machine=romp-ibm
+ ;;
++ s390 | s390-*)
++ basic_machine=s390-ibm
++ ;;
++ s390x | s390x-*)
++ basic_machine=s390x-ibm
++ ;;
+ sa29200)
+ basic_machine=a29k-amd
+ os=-udi
+ ;;
++ sb1)
++ basic_machine=mipsisa64sb1-unknown
++ ;;
++ sb1el)
++ basic_machine=mipsisa64sb1el-unknown
++ ;;
++ sei)
++ basic_machine=mips-sei
++ os=-seiux
++ ;;
+ sequent)
+ basic_machine=i386-sequent
+ ;;
+@@ -794,7 +880,10 @@
+ basic_machine=sh-hitachi
+ os=-hms
+ ;;
+- sparclite-wrs)
++ sh64)
++ basic_machine=sh64-unknown
++ ;;
++ sparclite-wrs | simso-wrs)
+ basic_machine=sparclite-wrs
+ os=-vxworks
+ ;;
+@@ -861,22 +950,42 @@
+ os=-dynix
+ ;;
+ t3e)
+- basic_machine=t3e-cray
++ basic_machine=alphaev5-cray
++ os=-unicos
++ ;;
++ t90)
++ basic_machine=t90-cray
+ os=-unicos
+ ;;
+ tic54x | c54x*)
+ basic_machine=tic54x-unknown
+ os=-coff
+ ;;
++ tic55x | c55x*)
++ basic_machine=tic55x-unknown
++ os=-coff
++ ;;
++ tic6x | c6x*)
++ basic_machine=tic6x-unknown
++ os=-coff
++ ;;
+ tx39)
+ basic_machine=mipstx39-unknown
+ ;;
+ tx39el)
+ basic_machine=mipstx39el-unknown
+ ;;
++ toad1)
++ basic_machine=pdp10-xkl
++ os=-tops20
++ ;;
+ tower | tower-32)
+ basic_machine=m68k-ncr
+ ;;
++ tpf)
++ basic_machine=s390x-ibm
++ os=-tpf
++ ;;
+ udi29k)
+ basic_machine=a29k-amd
+ os=-udi
+@@ -920,17 +1029,13 @@
+ basic_machine=hppa1.1-winbond
+ os=-proelf
+ ;;
+- windows32)
+- basic_machine=i386-pc
+- os=-windows32-msvcrt
+- ;;
+- xmp)
+- basic_machine=xmp-cray
+- os=-unicos
+- ;;
+ xps | xps100)
+ basic_machine=xps100-honeywell
+ ;;
++ ymp)
++ basic_machine=ymp-cray
++ os=-unicos
++ ;;
+ z8k-*-coff)
+ basic_machine=z8k-unknown
+ os=-sim
+@@ -951,13 +1056,6 @@
+ op60c)
+ basic_machine=hppa1.1-oki
+ ;;
+- mips)
+- if [ x$os = x-linux-gnu ]; then
+- basic_machine=mips-unknown
+- else
+- basic_machine=mips-mips
+- fi
+- ;;
+ romp)
+ basic_machine=romp-ibm
+ ;;
+@@ -977,10 +1075,13 @@
+ we32k)
+ basic_machine=we32k-att
+ ;;
+- sh3 | sh4 | sh3eb | sh4eb)
++ sh3 | sh4 | sh[34]eb | sh[1234]le | sh[23]ele)
+ basic_machine=sh-unknown
+ ;;
+- sparc | sparcv9 | sparcv9b)
++ sh64)
++ basic_machine=sh64-unknown
++ ;;
++ sparc | sparcv8 | sparcv9 | sparcv9b)
+ basic_machine=sparc-sun
+ ;;
+ cydra)
+@@ -998,10 +1099,6 @@
+ pmac | pmac-mpw)
+ basic_machine=powerpc-apple
+ ;;
+- c4x*)
+- basic_machine=c4x-none
+- os=-coff
+- ;;
+ *-unknown)
+ # Make sure to match an already-canonicalized machine name.
+ ;;
+@@ -1057,17 +1154,20 @@
+ | -aos* \
+ | -nindy* | -vxsim* | -vxworks* | -ebmon* | -hms* | -mvs* \
+ | -clix* | -riscos* | -uniplus* | -iris* | -rtu* | -xenix* \
+- | -hiux* | -386bsd* | -netbsd* | -openbsd* | -freebsd* | -riscix* \
+- | -lynxos* | -bosx* | -nextstep* | -cxux* | -aout* | -elf* | -oabi* \
++ | -hiux* | -386bsd* | -knetbsd* | -mirbsd* | -netbsd* | -openbsd* \
++ | -ekkobsd* | -kfreebsd* | -freebsd* | -riscix* | -lynxos* \
++ | -bosx* | -nextstep* | -cxux* | -aout* | -elf* | -oabi* \
+ | -ptx* | -coff* | -ecoff* | -winnt* | -domain* | -vsta* \
+ | -udi* | -eabi* | -lites* | -ieee* | -go32* | -aux* \
+ | -chorusos* | -chorusrdb* \
+ | -cygwin* | -pe* | -psos* | -moss* | -proelf* | -rtems* \
+- | -mingw32* | -linux-gnu* | -uxpv* | -beos* | -mpeix* | -udk* \
+- | -interix* | -uwin* | -rhapsody* | -darwin* | -opened* \
++ | -mingw32* | -linux-gnu* | -linux-uclibc* | -uxpv* | -beos* | -mpeix* | -udk* \
++ | -interix* | -uwin* | -mks* | -rhapsody* | -darwin* | -opened* \
+ | -openstep* | -oskit* | -conix* | -pw32* | -nonstopux* \
+ | -storm-chaos* | -tops10* | -tenex* | -tops20* | -its* \
+- | -os2* | -vos*)
++ | -os2* | -vos* | -palmos* | -uclinux* | -nucleus* \
++ | -morphos* | -superux* | -rtmk* | -rtmk-nova* | -windiss* \
++ | -powermax* | -dnix* | -nx6 | -nx7 | -sei* | -dragonfly*)
+ # Remember, each alternative MUST END IN *, to match a version number.
+ ;;
+ -qnx*)
+@@ -1079,8 +1179,10 @@
+ ;;
+ esac
+ ;;
++ -nto-qnx*)
++ ;;
+ -nto*)
+- os=-nto-qnx
++ os=`echo $os | sed -e 's|nto|nto-qnx|'`
+ ;;
+ -sim | -es1800* | -hms* | -xray | -os68k* | -none* | -v88r* \
+ | -windows* | -osx | -abug | -netware* | -os9* | -beos* \
+@@ -1089,6 +1191,9 @@
+ -mac*)
+ os=`echo $os | sed -e 's|mac|macos|'`
+ ;;
++ -linux-dietlibc)
++ os=-linux-dietlibc
++ ;;
+ -linux*)
+ os=`echo $os | sed -e 's|linux|linux-gnu|'`
+ ;;
+@@ -1101,6 +1206,9 @@
+ -opened*)
+ os=-openedition
+ ;;
++ -os400*)
++ os=-os400
++ ;;
+ -wince*)
+ os=-wince
+ ;;
+@@ -1119,12 +1227,21 @@
+ -acis*)
+ os=-aos
+ ;;
++ -atheos*)
++ os=-atheos
++ ;;
++ -syllable*)
++ os=-syllable
++ ;;
+ -386bsd)
+ os=-bsd
+ ;;
+ -ctix* | -uts*)
+ os=-sysv
+ ;;
++ -nova*)
++ os=-rtmk-nova
++ ;;
+ -ns2 )
+ os=-nextstep2
+ ;;
+@@ -1138,6 +1255,9 @@
+ -sinix*)
+ os=-sysv4
+ ;;
++ -tpf*)
++ os=-tpf
++ ;;
+ -triton*)
+ os=-sysv3
+ ;;
+@@ -1168,6 +1288,12 @@
+ -*mint | -mint[0-9]* | -*MiNT | -MiNT[0-9]*)
+ os=-mint
+ ;;
++ -aros*)
++ os=-aros
++ ;;
++ -kaos*)
++ os=-kaos
++ ;;
+ -none)
+ ;;
+ *)
+@@ -1199,6 +1325,10 @@
+ arm*-semi)
+ os=-aout
+ ;;
++ c4x-* | tic4x-*)
++ os=-coff
++ ;;
++ # This must come before the *-dec entry.
+ pdp10-*)
+ os=-tops20
+ ;;
+@@ -1229,6 +1359,9 @@
+ mips*-*)
+ os=-elf
+ ;;
++ or32-*)
++ os=-coff
++ ;;
+ *-tti) # must be before sparc entry or we get the wrong os.
+ os=-sysv3
+ ;;
+@@ -1373,10 +1506,16 @@
+ -mvs* | -opened*)
+ vendor=ibm
+ ;;
++ -os400*)
++ vendor=ibm
++ ;;
+ -ptx*)
+ vendor=sequent
+ ;;
+- -vxsim* | -vxworks*)
++ -tpf*)
++ vendor=ibm
++ ;;
++ -vxsim* | -vxworks* | -windiss*)
+ vendor=wrs
+ ;;
+ -aux*)
Added: trunk/packages/tree-puzzle/trunk/debian/rules
===================================================================
--- trunk/packages/tree-puzzle/trunk/debian/rules (rev 0)
+++ trunk/packages/tree-puzzle/trunk/debian/rules 2008-03-03 12:41:11 UTC (rev 1503)
@@ -0,0 +1,33 @@
+#!/usr/bin/make -f
+# debian/rules for tree-puzzle using cdbs
+# Andreas Tille <tille at debian.org>, GPL
+
+pkg:=tree-puzzle
+ppkg:=tree-ppuzzle
+
+DEB_COMPRESS_EXCLUDE := .pdf .phy trees .b
+
+## unfortunately this does not work :-(
+# DEB_DH_INSTALLEXAMPLES_ARGS = --exclude Makefile*
+## ... use regexp in tree-puzzle-doc.examples
+
+include /usr/share/cdbs/1/rules/simple-patchsys.mk
+include /usr/share/cdbs/1/rules/debhelper.mk
+include /usr/share/cdbs/1/class/gnome.mk
+
+clean::
+ ## Work around a bug in the automake stuff of the upstream author ...
+ ## src/sprng is not cleaned completely
+ # -cd src/sprng; $(MAKE) clean
+ ## This worked formerly but once this is reached there is no
+ ## Makefile anymore in place so ...
+ rm -f src/sprng/*.o
+
+install/tree-puzzle::
+ # The binary has to be renamed because of the generic name
+# cp -a src/puzzle `pwd`/debian/`dh_listpackages`/usr/bin/tree-puzzle
+ mv `pwd`/debian/tmp/usr/bin/puzzle `pwd`/debian/$(pkg)/usr/bin/$(pkg)
+
+install/tree-ppuzzle::
+ # The binary has to be renamed because of the generic name
+ mv `pwd`/debian/tmp/usr/bin/ppuzzle `pwd`/debian/$(ppkg)/usr/bin/$(ppkg)
Property changes on: trunk/packages/tree-puzzle/trunk/debian/rules
___________________________________________________________________
Name: svn:executable
+ *
Added: trunk/packages/tree-puzzle/trunk/debian/tree-ppuzzle.1
===================================================================
--- trunk/packages/tree-puzzle/trunk/debian/tree-ppuzzle.1 (rev 0)
+++ trunk/packages/tree-puzzle/trunk/debian/tree-ppuzzle.1 2008-03-03 12:41:11 UTC (rev 1503)
@@ -0,0 +1,36 @@
+.TH TREE-PPUZZLE 1 "April 20, 2001"
+.SH NAME
+tree-ppuzzle \- Reconstruction of phylogenetic trees by maximum likelihood (parallelized version)
+.SH SYNOPSIS
+.B tree-ppuzzle
+.RI
+.SH DESCRIPTION
+This manual page documents briefly the
+.B tree-ppuzzle
+command.
+This manual page was written for the Debian GNU/Linux distribution
+because the original program does not have a manual page.
+.PP
+TREE-PPUZZLE is the new name for the program previously known as PPUZZLE!
+.PP
+\fBtree-puzzle\fP is an interactive console program that implements a fast
+tree search algorithm, quartet puzzling, that allows analysis of large
+data sets and automatically assigns estimations of support to each
+internal branch. TREE-PPUZZLE also computes pairwise maximum likelihood
+distances as well as branch lengths for user specified trees. Branch
+lengths can also be calculated under the clock-assumption. In
+addition, TREE-PPUZZLE offers a novel method, likelihood mapping, to
+investigate the support of a hypothesized internal branch without
+computing an overall tree and to visualize the phylogenetic content of
+a sequence alignment.
+.PP
+This program is the paralelized version of tree-puzzle.
+.SH OPTIONS
+There are no options. For usage please look at /usr/share/doc/tree-puzzle/tree-puzzle.pdf.
+.SH SEE ALSO
+.BR phylip (1),
+.BR treetool (1).
+.BR tree-puzzle (1).
+.PP
+This manual page was written by Dr. Guenter Bechly <gbechly at debian.org>,
+for the Debian GNU/Linux system (but may be used by others).
Added: trunk/packages/tree-puzzle/trunk/debian/tree-ppuzzle.desktop
===================================================================
--- trunk/packages/tree-puzzle/trunk/debian/tree-ppuzzle.desktop (rev 0)
+++ trunk/packages/tree-puzzle/trunk/debian/tree-ppuzzle.desktop 2008-03-03 12:41:11 UTC (rev 1503)
@@ -0,0 +1,13 @@
+[Desktop Entry]
+Version=1.0
+Encoding=UTF-8
+Terminal=true
+Icon=tree-ppuzzle
+Exec=tree-ppuzzle
+Name=tree-ppuzzle
+GenericName=Reconstruction of phylogenetic trees (parallelized)
+GenericName[en]=Reconstruction of phylogenetic trees (parallelized)
+Comment=Reconstruction of phylogenetic trees by maximum likelihood (parallelized version)
+Comment[en]=Reconstruction of phylogenetic trees by maximum likelihood (parallelized version)
+Type=Application
+Categories=Biology;Science;Education;
Added: trunk/packages/tree-puzzle/trunk/debian/tree-ppuzzle.dirs
===================================================================
--- trunk/packages/tree-puzzle/trunk/debian/tree-ppuzzle.dirs (rev 0)
+++ trunk/packages/tree-puzzle/trunk/debian/tree-ppuzzle.dirs 2008-03-03 12:41:11 UTC (rev 1503)
@@ -0,0 +1 @@
+usr/bin
Added: trunk/packages/tree-puzzle/trunk/debian/tree-ppuzzle.docs
===================================================================
--- trunk/packages/tree-puzzle/trunk/debian/tree-ppuzzle.docs (rev 0)
+++ trunk/packages/tree-puzzle/trunk/debian/tree-ppuzzle.docs 2008-03-03 12:41:11 UTC (rev 1503)
@@ -0,0 +1 @@
+debian/README.Debian
Added: trunk/packages/tree-puzzle/trunk/debian/tree-ppuzzle.install
===================================================================
--- trunk/packages/tree-puzzle/trunk/debian/tree-ppuzzle.install (rev 0)
+++ trunk/packages/tree-puzzle/trunk/debian/tree-ppuzzle.install 2008-03-03 12:41:11 UTC (rev 1503)
@@ -0,0 +1,2 @@
+debian/tree-ppuzzle.desktop usr/share/applications
+debian/tree-ppuzzle.xpm usr/share/pixmaps
Added: trunk/packages/tree-puzzle/trunk/debian/tree-ppuzzle.manpages
===================================================================
--- trunk/packages/tree-puzzle/trunk/debian/tree-ppuzzle.manpages (rev 0)
+++ trunk/packages/tree-puzzle/trunk/debian/tree-ppuzzle.manpages 2008-03-03 12:41:11 UTC (rev 1503)
@@ -0,0 +1 @@
+debian/tree-ppuzzle.1
Added: trunk/packages/tree-puzzle/trunk/debian/tree-ppuzzle.xpm
===================================================================
--- trunk/packages/tree-puzzle/trunk/debian/tree-ppuzzle.xpm (rev 0)
+++ trunk/packages/tree-puzzle/trunk/debian/tree-ppuzzle.xpm 2008-03-03 12:41:11 UTC (rev 1503)
@@ -0,0 +1,40 @@
+/* XPM */
+static char *tree-ppuzzle[] = {
+/* columns rows colors chars-per-pixel */
+"32 32 2 1",
+" c black",
+". c #0099FF",
+/* pixels */
+" ",
+" ...... ....... ...... ....... ",
+" . . . . . . . . ",
+" . .. ..... . .. ..... ",
+" .... .. .. . . .... .. .. . . ",
+" . . . . . . . . ",
+" .. . . ....... .. . . ....... ",
+" . ..... . . ..... . ",
+" .. . ..... .. . ..... ",
+" . ... . . . ... . . ",
+" .... . ... ... .... . ... ... ",
+" . . . . . . . . ",
+" .. ... ... ... .. ... ... ... ",
+" . . . . . . . . ",
+" . .... ... ... . .... ... ... ",
+" ",
+" ",
+" ...... ....... ...... ....... ",
+" . . . . . . . . ",
+" . .. ..... . .. ..... ",
+" .... .. .. . . .... .. .. . . ",
+" . . . . . . . . ",
+" .. . . ....... .. . . ....... ",
+" . ..... . . ..... . ",
+" .. . ..... .. . ..... ",
+" . ... . . . ... . . ",
+" .... . ... ... .... . ... ... ",
+" . . . . . . . . ",
+" .. ... ... ... .. ... ... ... ",
+" . . . . . . . . ",
+" . .... ... ... . .... ... ... ",
+" "
+};
Added: trunk/packages/tree-puzzle/trunk/debian/tree-puzzle-doc.doc-base
===================================================================
--- trunk/packages/tree-puzzle/trunk/debian/tree-puzzle-doc.doc-base (rev 0)
+++ trunk/packages/tree-puzzle/trunk/debian/tree-puzzle-doc.doc-base 2008-03-03 12:41:11 UTC (rev 1503)
@@ -0,0 +1,9 @@
+Document: tree-puzzle
+Title: TREE-PUZZLE Manual
+Author: Heiko A. Schmidt, Korbinian Strimmer, Martin Vingron, Arndt von Haeseler
+Abstract: Maximum likelihood analysis for nucleotide, amino acid, and two-state
+ data
+Section: Apps/Science
+
+Format: pdf
+Files: /usr/share/doc/tree-puzzle-doc/tree-puzzle.pdf
Added: trunk/packages/tree-puzzle/trunk/debian/tree-puzzle-doc.docs
===================================================================
--- trunk/packages/tree-puzzle/trunk/debian/tree-puzzle-doc.docs (rev 0)
+++ trunk/packages/tree-puzzle/trunk/debian/tree-puzzle-doc.docs 2008-03-03 12:41:11 UTC (rev 1503)
@@ -0,0 +1,4 @@
+AUTHORS
+README
+doc/*.html
+doc/*.pdf
Added: trunk/packages/tree-puzzle/trunk/debian/tree-puzzle-doc.examples
===================================================================
--- trunk/packages/tree-puzzle/trunk/debian/tree-puzzle-doc.examples (rev 0)
+++ trunk/packages/tree-puzzle/trunk/debian/tree-puzzle-doc.examples 2008-03-03 12:41:11 UTC (rev 1503)
@@ -0,0 +1 @@
+data/[A-LN-Za-z]*
Added: trunk/packages/tree-puzzle/trunk/debian/tree-puzzle.1
===================================================================
--- trunk/packages/tree-puzzle/trunk/debian/tree-puzzle.1 (rev 0)
+++ trunk/packages/tree-puzzle/trunk/debian/tree-puzzle.1 2008-03-03 12:41:11 UTC (rev 1503)
@@ -0,0 +1,36 @@
+.TH TREE-PUZZLE 1 "April 20, 2001"
+.SH NAME
+tree-puzzle \- Reconstruction of phylogenetic trees by maximum likelihood
+.SH SYNOPSIS
+.B tree-puzzle
+.RI
+.SH DESCRIPTION
+This manual page documents briefly the
+.B tree-puzzle
+command.
+This manual page was written for the Debian GNU/Linux distribution
+because the original program does not have a manual page.
+.PP
+TREE-PUZZLE is the new name for the program previously known as PUZZLE!
+.PP
+\fBtree-puzzle\fP is an interactive console program that implements a fast
+tree search algorithm, quartet puzzling, that allows analysis of large
+data sets and automatically assigns estimations of support to each
+internal branch. TREE-PUZZLE also computes pairwise maximum likelihood
+distances as well as branch lengths for user specified trees. Branch
+lengths can also be calculated under the clock-assumption. In
+addition, TREE-PUZZLE offers a novel method, likelihood mapping, to
+investigate the support of a hypothesized internal branch without
+computing an overall tree and to visualize the phylogenetic content of
+a sequence alignment.
+.PP
+There is also a paralellized version tree-ppuzzle available.
+.SH OPTIONS
+There are no options. For usage please look at /usr/share/doc/tree-puzzle/tree-puzzle.pdf.
+.SH SEE ALSO
+.BR phylip (1),
+.BR treetool (1).
+.BR tree-ppuzzle (1).
+.PP
+This manual page was written by Dr. Guenter Bechly <gbechly at debian.org>,
+for the Debian GNU/Linux system (but may be used by others).
Added: trunk/packages/tree-puzzle/trunk/debian/tree-puzzle.desktop
===================================================================
--- trunk/packages/tree-puzzle/trunk/debian/tree-puzzle.desktop (rev 0)
+++ trunk/packages/tree-puzzle/trunk/debian/tree-puzzle.desktop 2008-03-03 12:41:11 UTC (rev 1503)
@@ -0,0 +1,13 @@
+[Desktop Entry]
+Version=1.0
+Encoding=UTF-8
+Terminal=yes
+Icon=tree-puzzle
+Exec=tree-puzzle
+Name=tree-puzzle
+GenericName=Reconstruction of phylogenetic trees
+GenericName[en]=Reconstruction of phylogenetic trees
+Comment=Reconstruction of phylogenetic trees by maximum likelihood
+Comment[en]=Reconstruction of phylogenetic trees by maximum likelihood
+Type=Application
+Categories=Biology;Science;Education;
Added: trunk/packages/tree-puzzle/trunk/debian/tree-puzzle.dirs
===================================================================
--- trunk/packages/tree-puzzle/trunk/debian/tree-puzzle.dirs (rev 0)
+++ trunk/packages/tree-puzzle/trunk/debian/tree-puzzle.dirs 2008-03-03 12:41:11 UTC (rev 1503)
@@ -0,0 +1 @@
+usr/bin
Added: trunk/packages/tree-puzzle/trunk/debian/tree-puzzle.docs
===================================================================
--- trunk/packages/tree-puzzle/trunk/debian/tree-puzzle.docs (rev 0)
+++ trunk/packages/tree-puzzle/trunk/debian/tree-puzzle.docs 2008-03-03 12:41:11 UTC (rev 1503)
@@ -0,0 +1 @@
+debian/README.Debian
Added: trunk/packages/tree-puzzle/trunk/debian/tree-puzzle.install
===================================================================
--- trunk/packages/tree-puzzle/trunk/debian/tree-puzzle.install (rev 0)
+++ trunk/packages/tree-puzzle/trunk/debian/tree-puzzle.install 2008-03-03 12:41:11 UTC (rev 1503)
@@ -0,0 +1,2 @@
+debian/tree-puzzle.desktop usr/share/applications
+debian/tree-puzzle.xpm usr/share/pixmaps
Added: trunk/packages/tree-puzzle/trunk/debian/tree-puzzle.manpages
===================================================================
--- trunk/packages/tree-puzzle/trunk/debian/tree-puzzle.manpages (rev 0)
+++ trunk/packages/tree-puzzle/trunk/debian/tree-puzzle.manpages 2008-03-03 12:41:11 UTC (rev 1503)
@@ -0,0 +1 @@
+debian/tree-puzzle.1
Added: trunk/packages/tree-puzzle/trunk/debian/tree-puzzle.xpm
===================================================================
--- trunk/packages/tree-puzzle/trunk/debian/tree-puzzle.xpm (rev 0)
+++ trunk/packages/tree-puzzle/trunk/debian/tree-puzzle.xpm 2008-03-03 12:41:11 UTC (rev 1503)
@@ -0,0 +1,40 @@
+/* XPM */
+static char *puzzle[] = {
+/* columns rows colors chars-per-pixel */
+"32 32 2 1",
+" c black",
+". c #0098F8",
+/* pixels */
+" ",
+" ",
+" ............ .............. ",
+" ............ .............. ",
+" .. .. .. .. ",
+" .. .. .. .. ",
+" .. .... .......... ",
+" .. .... .......... ",
+" ........ .... .... .. .. ",
+" ........ .... .... .. .. ",
+" .. .. .. .. ",
+" .. .. .. .. ",
+" .... .. .. .............. ",
+" .... .. .. .............. ",
+" .. .......... .. ",
+" .. .......... .. ",
+" .... .. .......... ",
+" .... .. .......... ",
+" .. ...... .. .. ",
+" .. ...... .. .. ",
+" ........ .. ...... ...... ",
+" ........ .. ...... ...... ",
+" .. .. .. .. ",
+" .. .. .. .. ",
+" .... ...... ...... ...... ",
+" .... ...... ...... ...... ",
+" .. .. .. .. ",
+" .. .. .. .. ",
+" .. ........ ...... ...... ",
+" .. ........ ...... ...... ",
+" ",
+" "
+};
Added: trunk/packages/tree-puzzle/trunk/debian/watch
===================================================================
--- trunk/packages/tree-puzzle/trunk/debian/watch (rev 0)
+++ trunk/packages/tree-puzzle/trunk/debian/watch 2008-03-03 12:41:11 UTC (rev 1503)
@@ -0,0 +1,2 @@
+version=3
+http://www.tree-puzzle.de/tree-puzzle-([.0-9]*)\.tar\.gz
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