[med-svn] r1522 - in trunk/packages: dialign-t/trunk/debian kalign/trunk/debian mafft/trunk/debian muscle/trunk/debian poa/trunk/debian probcons/trunk/debian
charles-guest at alioth.debian.org
charles-guest at alioth.debian.org
Thu Mar 6 05:35:46 UTC 2008
Author: charles-guest
Date: 2008-03-06 05:35:46 +0000 (Thu, 06 Mar 2008)
New Revision: 1522
Modified:
trunk/packages/dialign-t/trunk/debian/changelog
trunk/packages/dialign-t/trunk/debian/control
trunk/packages/kalign/trunk/debian/changelog
trunk/packages/kalign/trunk/debian/control
trunk/packages/mafft/trunk/debian/changelog
trunk/packages/mafft/trunk/debian/control
trunk/packages/muscle/trunk/debian/changelog
trunk/packages/muscle/trunk/debian/control
trunk/packages/poa/trunk/debian/changelog
trunk/packages/poa/trunk/debian/control
trunk/packages/probcons/trunk/debian/changelog
trunk/packages/probcons/trunk/debian/control
Log:
Enhances: t-coffee
Modified: trunk/packages/dialign-t/trunk/debian/changelog
===================================================================
--- trunk/packages/dialign-t/trunk/debian/changelog 2008-03-06 05:24:38 UTC (rev 1521)
+++ trunk/packages/dialign-t/trunk/debian/changelog 2008-03-06 05:35:46 UTC (rev 1522)
@@ -1,7 +1,11 @@
dialign-t (0.2.2.dfsg-2) UNRELEASED; urgency=low
+ [ David Paleino ]
* Updated to Standards-Version 3.7.3 (no changes needed)
+ [ Charles Plessy ]
+ * debian/control: Enhances: t-coffee.
+
-- David Paleino <d.paleino at gmail.com> Wed, 06 Feb 2008 13:11:51 +0100
dialign-t (0.2.2.dfsg-1) unstable; urgency=low
Modified: trunk/packages/dialign-t/trunk/debian/control
===================================================================
--- trunk/packages/dialign-t/trunk/debian/control 2008-03-06 05:24:38 UTC (rev 1521)
+++ trunk/packages/dialign-t/trunk/debian/control 2008-03-06 05:35:46 UTC (rev 1522)
@@ -13,6 +13,7 @@
Package: dialign-t
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends}, dialign-t-data (= ${source:Version})
+Enhances: t-coffee
Description: Segment-based multiple sequence alignment
DIALIGN-T is a command line tool to perform multiple alignment of protein or
DNA sequences. It is a complete reimplementation of the segment-base approach
Modified: trunk/packages/kalign/trunk/debian/changelog
===================================================================
--- trunk/packages/kalign/trunk/debian/changelog 2008-03-06 05:24:38 UTC (rev 1521)
+++ trunk/packages/kalign/trunk/debian/changelog 2008-03-06 05:35:46 UTC (rev 1522)
@@ -1,8 +1,10 @@
kalign (2.03-2) UNRELEASED; urgency=low
[ Charles Plessy ]
- * Add Subversion repository URL to debian/control.
- * Moved the Homepage: field out from the package's description.
+ * debian/control:
+ - Add Subversion repository URL to debian/control.
+ - Moved the Homepage: field out from the package's description.
+ - Enhances: t-coffee.
[ David Paleino ]
* debian/kalign.1 added - manpages are now statically generated
Modified: trunk/packages/kalign/trunk/debian/control
===================================================================
--- trunk/packages/kalign/trunk/debian/control 2008-03-06 05:24:38 UTC (rev 1521)
+++ trunk/packages/kalign/trunk/debian/control 2008-03-06 05:35:46 UTC (rev 1522)
@@ -14,6 +14,7 @@
Package: kalign
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends}
+Enhances: t-coffee
Description: Global and progressive multiple sequence alignment
Kalign is a command line tool to perform multiple alignment of
biological sequences. It employs the Wu-Manber string-matching
Modified: trunk/packages/mafft/trunk/debian/changelog
===================================================================
--- trunk/packages/mafft/trunk/debian/changelog 2008-03-06 05:24:38 UTC (rev 1521)
+++ trunk/packages/mafft/trunk/debian/changelog 2008-03-06 05:35:46 UTC (rev 1522)
@@ -1,7 +1,9 @@
mafft (6.240-2) UNRELEASED; urgency=low
[ Charles Plessy ]
- * Moved the Homepage: field out from the package's description.
+ * debian/control:
+ - Moved the Homepage: field out from the package's description.
+ - Enhances: t-coffee.
[ David Paleino ]
* debian/mafft.1, debian/mafft-homologs.1 added - manpages built statically.
@@ -9,10 +11,10 @@
- B-D updated (see above)
- added myself to Uploaders
- moved XS-Vcs-* fields to Vcs-*
+ - Updated to Standards-Version 3.7.3 (no changes needed)
* debian/rules:
- reflecting static build of manpages
- minor changes
- * Updated to Standards-Version 3.7.3 (no changes needed)
-- David Paleino <d.paleino at gmail.com> Wed, 06 Feb 2008 13:11:54 +0100
Modified: trunk/packages/mafft/trunk/debian/control
===================================================================
--- trunk/packages/mafft/trunk/debian/control 2008-03-06 05:24:38 UTC (rev 1521)
+++ trunk/packages/mafft/trunk/debian/control 2008-03-06 05:35:46 UTC (rev 1522)
@@ -15,6 +15,7 @@
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends}
Suggests: ruby, lynx, blast2
+Enhances: t-coffee
Description: Multiple alignment program for amino acid or nucleotide sequences
MAFFT is a multiple sequence alignment program which offers three
accuracy-oriented methods:
Modified: trunk/packages/muscle/trunk/debian/changelog
===================================================================
--- trunk/packages/muscle/trunk/debian/changelog 2008-03-06 05:24:38 UTC (rev 1521)
+++ trunk/packages/muscle/trunk/debian/changelog 2008-03-06 05:35:46 UTC (rev 1522)
@@ -1,3 +1,9 @@
+muscle (3.70+fix1-3) UNRELEASED; urgency=low
+
+ * debian/control: Enhances: t-coffee.
+
+ -- Charles Plessy <charles-debian-nospam at plessy.org> Thu, 06 Mar 2008 14:25:46 +0900
+
muscle (3.70+fix1-2) unstable; urgency=low
* debian/control Conflicts: and Replaces: muscle-doc (Closes: #465607)
Modified: trunk/packages/muscle/trunk/debian/control
===================================================================
--- trunk/packages/muscle/trunk/debian/control 2008-03-06 05:24:38 UTC (rev 1521)
+++ trunk/packages/muscle/trunk/debian/control 2008-03-06 05:35:46 UTC (rev 1522)
@@ -18,7 +18,7 @@
Conflicts: muscle-doc
Replaces: muscle-doc
Provides: muscle-doc
-Enhances: seaview
+Enhances: seaview, t-coffee
Description: Multiple alignment program of protein sequences
MUSCLE is a multiple alignment program for protein sequences. MUSCLE
stands for multiple sequence comparison by log-expectation. In the
Modified: trunk/packages/poa/trunk/debian/changelog
===================================================================
--- trunk/packages/poa/trunk/debian/changelog 2008-03-06 05:24:38 UTC (rev 1521)
+++ trunk/packages/poa/trunk/debian/changelog 2008-03-06 05:35:46 UTC (rev 1522)
@@ -1,8 +1,10 @@
poa (2.0+20060928-2) UNRELEASED; urgency=low
[ Charles Plessy ]
- * Add Subversion repository URL to debian/control.
- * Moved the Homepage: field out from the package's description.
+ * debian/control:
+ - Add Subversion repository URL to debian/control.
+ - Moved the Homepage: field out from the package's description.
+ - Enhances: t-coffee.
[ Nelson A. de Oliveira ]
* Added watch file.
@@ -13,10 +15,10 @@
- B-D updated
- added myself to Uploaders
- moved XS-Vcs-* to Vcs-*
+ - Updated to Standards-Version 3.7.3 (no changes needed)
* debian/rules:
- statically build manpages (target poa.1 available)
- minor changes
- * Updated to Standards-Version 3.7.3 (no changes needed)
-- David Paleino <d.paleino at gmail.com> Wed, 06 Feb 2008 13:11:56 +0100
Modified: trunk/packages/poa/trunk/debian/control
===================================================================
--- trunk/packages/poa/trunk/debian/control 2008-03-06 05:24:38 UTC (rev 1521)
+++ trunk/packages/poa/trunk/debian/control 2008-03-06 05:35:46 UTC (rev 1522)
@@ -15,6 +15,7 @@
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends}
Suggests: blast2
+Enhances: t-coffee
Description: Partial Order Alignment for multiple sequence alignment
POA is Partial Order Alignment, a fast program for multiple sequence
alignment (MSA) in bioinformatics. Its advantages are speed,
Modified: trunk/packages/probcons/trunk/debian/changelog
===================================================================
--- trunk/packages/probcons/trunk/debian/changelog 2008-03-06 05:24:38 UTC (rev 1521)
+++ trunk/packages/probcons/trunk/debian/changelog 2008-03-06 05:35:46 UTC (rev 1522)
@@ -1,3 +1,9 @@
+probcons (1.12-5) UNRELEASED; urgency=low
+
+ * debian/control: Enhances: t-coffee.
+
+ -- Charles Plessy <charles-debian-nospam at plessy.org> Thu, 06 Mar 2008 14:33:53 +0900
+
probcons (1.12-4) unstable; urgency=low
[ Charles Plessy ]
Modified: trunk/packages/probcons/trunk/debian/control
===================================================================
--- trunk/packages/probcons/trunk/debian/control 2008-03-06 05:24:38 UTC (rev 1521)
+++ trunk/packages/probcons/trunk/debian/control 2008-03-06 05:35:46 UTC (rev 1522)
@@ -15,6 +15,7 @@
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends}
Suggests: probcons-extra
+Enhances: t-coffee
Description: PROBabilistic CONSistency-based multiple sequence alignment
Tool for generating multiple alignments of protein sequences. Using a
combination of probabilistic modeling and consistency-based alignment
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