[med-svn] r1821 - trunk/packages/dialign-t/trunk/debian

[plessy at alioth.debian.org]

Author: plessy
Date: 2008-05-02 04:15:43 +0000 (Fri, 02 May 2008)
New Revision: 1821

Added:
   trunk/packages/dialign-t/trunk/debian/dialign-tx.manpages
Modified:
   trunk/packages/dialign-t/trunk/debian/control
   trunk/packages/dialign-t/trunk/debian/copyright
   trunk/packages/dialign-t/trunk/debian/watch
Log:
Almost ready to upload, but I would like to hardcode the conf directory first.

Modified: trunk/packages/dialign-t/trunk/debian/control
===================================================================
--- trunk/packages/dialign-t/trunk/debian/control	2008-05-02 03:42:44 UTC (rev 1820)
+++ trunk/packages/dialign-t/trunk/debian/control	2008-05-02 04:15:43 UTC (rev 1821)
@@ -21,27 +21,21 @@
  DIALIGN-TX is a command line tool to perform multiple alignment of protein or
  DNA sequences. It is a complete reimplementation of the segment-base approach
  including several new improvements and heuristics that significantly enhance
- the quality of the output alignments compared to DIALIGN 2.2. For pairwise
- alignment, DIALIGN-TX
- uses a fragment-chaining algorithm that favours chains of
- low-scoring local alignments over isolated high-scoring fragments. For
- multiple alignment, DIALIGN-T uses an improved greedy procedure that is less
- sensitive to spurious local sequence similarities.
+ the quality of the output alignments compared to DIALIGN 2.2 and DIALIGN-T.
+ For pairwise alignment, DIALIGN-TX uses a fragment-chaining algorithm that
+ favours chains of low-scoring local alignments over isolated high-scoring
+ fragments. For multiple alignment, DIALIGN-TX uses an improved greedy
+ procedure that is less sensitive to spurious local sequence similarities.
  .
  DIALIGN-TX has been published in Amarendran R. Subramanian, Michael Kaufmann,
  Burkhard Morgenstern: Improvement of the segment-based approach for multiple
  sequence alignment by combining greedy and progressive alignment strategies.
  Submission in Progress, 2008.
- .
- DIALIGN-T has been published in Amarendran R. Subramanian, Jan Weyer-Menkhoff,
- Michael Kaufmann, Burkhard Morgenstern: DIALIGN-T: An improved algorithm for
- segment-based multiple sequence alignment. BMC Bioinformatics 2005, 6:66.
- 
 
 Package: dialign-tx-data
 Architecture: all
 Depends: ${misc:Depends}
 Recommends: dialign-t (= ${binary:Version})
-Description: Common data files for dialign-t
+Description: Common data files for dialign-tx
  This package contain the score matrices and probability distribution files
  that DIALIGN-TX needs to align peptidic and nucleic sequences.

Modified: trunk/packages/dialign-t/trunk/debian/copyright
===================================================================
--- trunk/packages/dialign-t/trunk/debian/copyright	2008-05-02 03:42:44 UTC (rev 1820)
+++ trunk/packages/dialign-t/trunk/debian/copyright	2008-05-02 04:15:43 UTC (rev 1821)
@@ -1,7 +1,7 @@
 X-Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat
 X-Debianized-By: Charles Plessy <plessy at debian.org>
 X-Debianized-Date: Tue,  9 Oct 2007 23:17:04 +0900
-X-Source-Downloaded-From: http://dialign-tx.gobics.de
+X-Source-Downloaded-From: http://dialign-tx.gobics.de/DIALIGN-TX_1.0.0.tar.gz
 X-Upstream-Author: Amarendran R. Subramanian <subraman at informatik.uni-tuebingen.de>
 
 

Added: trunk/packages/dialign-t/trunk/debian/dialign-tx.manpages
===================================================================
--- trunk/packages/dialign-t/trunk/debian/dialign-tx.manpages	                        (rev 0)
+++ trunk/packages/dialign-t/trunk/debian/dialign-tx.manpages	2008-05-02 04:15:43 UTC (rev 1821)
@@ -0,0 +1 @@
+debian/dialign-tx.1

Modified: trunk/packages/dialign-t/trunk/debian/watch
===================================================================
--- trunk/packages/dialign-t/trunk/debian/watch	2008-05-02 03:42:44 UTC (rev 1820)
+++ trunk/packages/dialign-t/trunk/debian/watch	2008-05-02 04:15:43 UTC (rev 1821)
@@ -1,4 +1,3 @@
 version=3
 #opts="dversionmangle=s/.dfsg.*//" \
-#opts="downloadurlmangle=s/download//" \
-http://dialign-tx.gobics.de/download DIALIGN-TX_(.*).tar.gz
+http://dialign-tx.gobics.de/download http://dialign-tx.gobics.de/DIALIGN-TX_(.*)\.tar\.gz