[med-svn] r1838 - in trunk/packages/libgo-perl/trunk/debian: . patches
plessy at alioth.debian.org
plessy at alioth.debian.org
Fri May 9 00:55:08 UTC 2008
Author: plessy
Date: 2008-05-09 00:55:07 +0000 (Fri, 09 May 2008)
New Revision: 1838
Added:
trunk/packages/libgo-perl/trunk/debian/patches/
trunk/packages/libgo-perl/trunk/debian/patches/fix-whatis-entries.patch
trunk/packages/libgo-perl/trunk/debian/patches/series
Modified:
trunk/packages/libgo-perl/trunk/debian/changelog
trunk/packages/libgo-perl/trunk/debian/control
trunk/packages/libgo-perl/trunk/debian/copyright
trunk/packages/libgo-perl/trunk/debian/rules
Log:
Using CDBS, wrote copyright file, started to work on the whatis entries.
Modified: trunk/packages/libgo-perl/trunk/debian/changelog
===================================================================
--- trunk/packages/libgo-perl/trunk/debian/changelog 2008-05-08 21:15:10 UTC (rev 1837)
+++ trunk/packages/libgo-perl/trunk/debian/changelog 2008-05-09 00:55:07 UTC (rev 1838)
@@ -1,5 +1,5 @@
-libgo-perl (0.07-1) UNRELEASED; urgency=low
+libgo-perl (0.08-1) UNRELEASED; urgency=low
- * Initial release (Closes: #)
+ * Initial release (Closes: #452923)
-- Charles Plessy <plessy at debian.org> Sun, 27 Apr 2008 17:01:14 +0900
Modified: trunk/packages/libgo-perl/trunk/debian/control
===================================================================
--- trunk/packages/libgo-perl/trunk/debian/control 2008-05-08 21:15:10 UTC (rev 1837)
+++ trunk/packages/libgo-perl/trunk/debian/control 2008-05-09 00:55:07 UTC (rev 1838)
@@ -1,24 +1,25 @@
Source: libgo-perl
Section: perl
Priority: optional
-Maintainer: Debian Perl Group <pkg-perl-maintainers at lists.alioth.debian.org>
-Uploaders: Charles Plessy <plessy at debian.org>,
-Build-Depends: debhelper (>= 5), dpatch
-Build-Depends-Indep: perl
-Standards-Version: 3.7.2
-Vcs-Svn: svn://svn.debian.org/pkg-perl/trunk/libgo-perl/
-Vcs-Browser: http://svn.debian.org/wsvn/pkg-perl/trunk/libgo-perl/
-Homepage: http://search.cpan.org/~cmungall/go-perl-0.07/
+Maintainer: Debian-Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Charles Plessy <plessy at debian.org>
+Build-Depends: debhelper (>= 5), cdbs
+Build-Depends-Indep: libdata-stag-perl
+Standards-Version: 3.7.3
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/libgo-perl/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/libgo-perl/trunk/
+Homepage: http://geneontology.sourceforge.net/
-Package: libsvg-perl
+Package: libgo-perl
Architecture: all
-Depends: ${perl:Depends}, libyaml-perl, libdigest-perl, libxml-libxml-perl, libxml-libxslt-perl, libxml-writer-perl, libgraphviz-perl
-Description: parses all Gene Ontology files formats and types
+Section: science
+Depends: ${perl:Depends}
+Recommends: libdata-stag-perl
+Suggests: xsltproc, libxml-perl, bioperl
+Description: perl modules for GO and other OBO ontologies
This is a collection of perl code for dealing with Gene Ontologies (GO) and
Open Biomedical Ontologies (OBO) style ontologies. It is part of the `go-dev'
distribution, but this Debian package is made from the CPAN archive. This
package contains both scripts (which can be used with no knowledge of perl),
and libraries which will be of use to perl programmers using GO or OBO.
- .
- It also depends on http://search.cpan.org/~cmungall/Data-Stag/
- Dependencies checked with find . -name '*pm' | xargs grep use.*\; | cut -f2- -d' ' | sort | uniq | less
Modified: trunk/packages/libgo-perl/trunk/debian/copyright
===================================================================
--- trunk/packages/libgo-perl/trunk/debian/copyright 2008-05-08 21:15:10 UTC (rev 1837)
+++ trunk/packages/libgo-perl/trunk/debian/copyright 2008-05-09 00:55:07 UTC (rev 1838)
@@ -1,36 +1,18 @@
-NOT FROM GO
+Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat?action=recall&rev=103
+Debianized-By: Charles Plessy <plessy at debian.org>
+Debianized-Date:
+Original-Source-Location:
+Upstream-Author: Chris Mungall <cjm at fruitfly.org>
+Files: *
+Copyright: © 2000-2008 Chris Mungall <cjm at fruitfly.org>
+License: GPL-1+ | Artistic
+ This module is free software. You may distribute under the same terms as perl itself.
+X-Comment: On Debian systems, the complete text of the GNU General
+ Public License can be found in `/usr/share/common-licenses/GPL',
+ while the complete text of the Artistic License can be found in
+ `/usr/share/common-licenses/Artistic'.
-This package was debianized by David Paleino <d.paleino at gmail.com> on
-Sat, 16 Jun 2007 08:43:06 +0200.
-
-It was downloaded from http://search.cpan.org/~ronan/SVG-2.34/
-
-Upstream Author:
-
- Ronan Oger <ronan at roasp.com>
-
-Copyright:
-
- (c) 2001-2005, Ronan Oger, RO IT Systems, GmbH
- <http://www.roitsystems.com>
- <http://www.prosvg.com>
-
-License:
-
- This software is released under the same terms as Perl.
-
- Perl is free software; you can redistribute it and/or modify it under the
- terms of either:
- a) the GNU General Public License as published by the Free Software
- Foundation; either version 1, or (at your option) any later version,
- or
- b) the "Artistic License" which comes with Perl.
-
-On Debian systems, the complete text of the GNU General
-Public License can be found in `/usr/share/common-licenses/GPL',
-while the complete text of the Artistic License can be found in
-`/usr/share/common-licenses/Artistic'.
-
-The Debian packaging is (C) 2007, David Paleino <d.paleino at gmail.com> and
-is licensed under the GPL, see above.
+Files: debian:
+Copyright: © 2008 Charles Plessy <plessy at debian.org>
+License: same as go-perl itself
Added: trunk/packages/libgo-perl/trunk/debian/patches/fix-whatis-entries.patch
===================================================================
--- trunk/packages/libgo-perl/trunk/debian/patches/fix-whatis-entries.patch (rev 0)
+++ trunk/packages/libgo-perl/trunk/debian/patches/fix-whatis-entries.patch 2008-05-09 00:55:07 UTC (rev 1838)
@@ -0,0 +1,173 @@
+--- a/GO/Handlers/base.pm
++++ b/GO/Handlers/base.pm
+@@ -9,7 +9,7 @@
+
+ =head1 NAME
+
+- GO::Handlers::base -
++ GO::Handlers::base - default handler
+
+ =head1 SYNOPSIS
+
+--- a/GO/Handlers/go_def.pm
++++ b/GO/Handlers/go_def.pm
+@@ -9,7 +9,7 @@
+
+ =head1 NAME
+
+- GO::Handlers::go_def -
++ GO::Handlers::go_def - go_def handler
+
+ =head1 SYNOPSIS
+
+--- a/GO/Handlers/go_ont.pm
++++ b/GO/Handlers/go_ont.pm
+@@ -9,7 +9,7 @@
+
+ =head1 NAME
+
+- GO::Handlers::go_ont -
++ GO::Handlers::go_ont - go_ont handler
+
+ =head1 SYNOPSIS
+
+--- a/GO/Handlers/go_xref.pm
++++ b/GO/Handlers/go_xref.pm
+@@ -9,7 +9,7 @@
+
+ =head1 NAME
+
+- GO::Handlers::go_xref -
++ GO::Handlers::go_xref - go_xref handler
+
+ =head1 SYNOPSIS
+
+--- a/GO/Handlers/godb_prestore.pm
++++ b/GO/Handlers/godb_prestore.pm
+@@ -9,7 +9,7 @@
+
+ =head1 NAME
+
+- GO::Handlers::godb_prestore - transforms OBO XML to GODB XML
++ GO::Handlers::godb_prestore - transforms OBO XML to GODB XML
+
+ =head1 SYNOPSIS
+
+--- a/GO/Handlers/obo_godb_flat.pm
++++ b/GO/Handlers/obo_godb_flat.pm
+@@ -9,7 +9,7 @@
+
+ =head1 NAME
+
+- GO::Handlers::obo_godb_flat -
++ GO::Handlers::obo_godb_flat - transforms OBO XML to MySQL tables
+
+ =head1 SYNOPSIS
+
+--- a/GO/Handlers/obo_html.pm
++++ b/GO/Handlers/obo_html.pm
+@@ -9,7 +9,7 @@
+
+ =head1 NAME
+
+- GO::Handlers::obo_html -
++ GO::Handlers::obo_html - OBO HTML handler
+
+ =head1 SYNOPSIS
+
+--- a/GO/Handlers/obo_text.pm
++++ b/GO/Handlers/obo_text.pm
+@@ -9,7 +9,7 @@
+
+ =head1 NAME
+
+- GO::Handlers::obo_text -
++ GO::Handlers::obo_text - OBO text handler
+
+ =head1 SYNOPSIS
+
+--- a/GO/Handlers/owl_to_obo_text.pm
++++ b/GO/Handlers/owl_to_obo_text.pm
+@@ -7,7 +7,7 @@
+
+ =head1 NAME
+
+-Bio::Parser::owl_to_obo_text
++Bio::Parser::owl_to_obo_text - private module
+
+ =head1 SYNOPSIS
+
+--- a/GO/Handlers/summary.pm
++++ b/GO/Handlers/summary.pm
+@@ -9,7 +9,7 @@
+
+ =head1 NAME
+
+- GO::Handlers::summary -
++ GO::Handlers::summary - summary about handlers
+
+ =head1 SYNOPSIS
+
+--- a/GO/Handlers/tbl.pm
++++ b/GO/Handlers/tbl.pm
+@@ -9,7 +9,7 @@
+
+ =head1 NAME
+
+- GO::Handlers::tbl -
++ GO::Handlers::tbl - TBL handler
+
+ =head1 SYNOPSIS
+
+--- a/GO/Handlers/text_html.pm
++++ b/GO/Handlers/text_html.pm
+@@ -9,7 +9,7 @@
+
+ =head1 NAME
+
+- GO::Handlers::text_html -
++ GO::Handlers::text_html - Text HTML handler
+
+ =head1 SYNOPSIS
+
+--- a/GO/Handlers/xsl_base.pm
++++ b/GO/Handlers/xsl_base.pm
+@@ -9,7 +9,7 @@
+
+ =head1 NAME
+
+- GO::Handlers::text_html -
++ GO::Handlers::text_html - text HTML handler
+
+ =head1 SYNOPSIS
+
+--- a/scripts/go-export-graph.pl
++++ b/scripts/go-export-graph.pl
+@@ -43,7 +43,7 @@
+
+ =head1 NAME
+
+-go-export-graph.pl
++go-export-graph.pl - exports a graph
+
+ =head1 SYNOPSIS
+
+--- a/scripts/go2fmt.pl
++++ b/scripts/go2fmt.pl
+@@ -97,11 +97,11 @@
+
+ =head1 NAME
+
+-go2fmt.pl
+-go2obo_xml
+-go2owl
+-go2rdf_xml
+-go2obo_text
++go2fmt.pl - converts GO/OBO files to FMT format
++go2obo_xml - converts GO/OBO files to OBO XML format
++go2owl - converts GO/OBO files to OWL format
++go2rdf_xml - converts GO/OBO files to RDF XML format
++go2obo_text - converts GO/OBO files to OBO text format
+
+ =head1 SYNOPSIS
+
Added: trunk/packages/libgo-perl/trunk/debian/patches/series
===================================================================
--- trunk/packages/libgo-perl/trunk/debian/patches/series (rev 0)
+++ trunk/packages/libgo-perl/trunk/debian/patches/series 2008-05-09 00:55:07 UTC (rev 1838)
@@ -0,0 +1 @@
+fix-whatis-entries.patch
Modified: trunk/packages/libgo-perl/trunk/debian/rules
===================================================================
--- trunk/packages/libgo-perl/trunk/debian/rules 2008-05-08 21:15:10 UTC (rev 1837)
+++ trunk/packages/libgo-perl/trunk/debian/rules 2008-05-09 00:55:07 UTC (rev 1838)
@@ -1,47 +1,4 @@
#!/usr/bin/make -f
-# -*- makefile -*-
-build: build-stamp
-build-stamp:
- dh_testdir
- # the VENDORARCHEXP and INSTALLVENDORARCH
- # variables are set to avoid the creation
- # of /usr/lib/perl5
- perl Makefile.PL \
- INSTALLDIRS=vendor \
- VENDORARCHEXP=/usr/share/perl5 \
- INSTALLVENDORARCH=/usr/share/perl5
- $(MAKE)
-# Got to understand how to run the test
-# $(MAKE) test
- touch $@
-
-clean: distclean
-distclean:
- dh_testdir
- dh_testroot
- dh_clean Makefile.old build-stamp
- [ ! -f Makefile ] || $(MAKE) distclean
-
-install: build
- dh_testdir
- dh_testroot
- dh_clean -k
- $(MAKE) install PREFIX=$(CURDIR)/debian/libgo-perl/usr
-
-binary-arch: build install
-binary-indep: build install
- dh_testdir
- dh_testroot
- dh_installchangelogs Changes
- dh_installdocs doc/*
- dh_compress
- dh_fixperms
- dh_perl
- dh_installdeb
- dh_gencontrol
- dh_md5sums
- dh_builddeb
-
-binary: binary-indep binary-arch
-.PHONY: build clean binary-indep binary-arch binary install
+include /usr/share/cdbs/1/rules/debhelper.mk
+include /usr/share/cdbs/1/class/perlmodule.mk
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