[med-svn] r1898 - in trunk/packages/mgltools: . pybabel/trunk/debian pyglf/trunk/debian scenario/trunk/debian sff/trunk/debian support/trunk/debian utpackages/trunk/debian
smoe-guest at alioth.debian.org
smoe-guest at alioth.debian.org
Tue May 20 13:46:32 UTC 2008
Author: smoe-guest
Date: 2008-05-20 13:46:31 +0000 (Tue, 20 May 2008)
New Revision: 1898
Added:
trunk/packages/mgltools/TODO
trunk/packages/mgltools/scenario/trunk/debian/README.Debian
trunk/packages/mgltools/scenario/trunk/debian/README.source
trunk/packages/mgltools/scenario/trunk/debian/watch
trunk/packages/mgltools/sff/trunk/debian/README.Debian
trunk/packages/mgltools/sff/trunk/debian/README.source
trunk/packages/mgltools/sff/trunk/debian/watch
trunk/packages/mgltools/support/trunk/debian/README.Debian
trunk/packages/mgltools/support/trunk/debian/README.source
trunk/packages/mgltools/support/trunk/debian/copyright
trunk/packages/mgltools/support/trunk/debian/watch
trunk/packages/mgltools/utpackages/trunk/debian/README.Debian
trunk/packages/mgltools/utpackages/trunk/debian/README.source
trunk/packages/mgltools/utpackages/trunk/debian/watch
Modified:
trunk/packages/mgltools/BUILD
trunk/packages/mgltools/pybabel/trunk/debian/README.Debian
trunk/packages/mgltools/pybabel/trunk/debian/README.source
trunk/packages/mgltools/pybabel/trunk/debian/control
trunk/packages/mgltools/pyglf/trunk/debian/README.Debian
trunk/packages/mgltools/scenario/trunk/debian/changelog
trunk/packages/mgltools/scenario/trunk/debian/control
trunk/packages/mgltools/sff/trunk/debian/changelog
trunk/packages/mgltools/sff/trunk/debian/control
trunk/packages/mgltools/support/trunk/debian/changelog
trunk/packages/mgltools/support/trunk/debian/control
trunk/packages/mgltools/utpackages/trunk/debian/changelog
trunk/packages/mgltools/utpackages/trunk/debian/control
trunk/packages/mgltools/utpackages/trunk/debian/dirs
Log:
* Interim updates for further packages.
Modified: trunk/packages/mgltools/BUILD
===================================================================
--- trunk/packages/mgltools/BUILD 2008-05-19 16:48:00 UTC (rev 1897)
+++ trunk/packages/mgltools/BUILD 2008-05-20 13:46:31 UTC (rev 1898)
@@ -142,10 +142,16 @@
for i in *.tar.gz; do tar xzvf $i; done
+For the use of svn-buildpackage, one should give it help to find the
+right folders that contain the source tarballs or would be the right
+place to eventuall build the Debian packages. For that, for each package
+edit a file .svn/deb-layout which, if you followed the instructions above,
+should probably look like this:
+ origDir=../../tarfiles
+ buildArea=../../build-area
-
Comments please send to
-- Steffen <moeller at debian.org> Mon, 19 May 2008 11:45:26 +0200
Added: trunk/packages/mgltools/TODO
===================================================================
--- trunk/packages/mgltools/TODO (rev 0)
+++ trunk/packages/mgltools/TODO 2008-05-20 13:46:31 UTC (rev 1898)
@@ -0,0 +1,22 @@
+The following packages
+
+* need help to get proper descriptions
+
+
+
+
+* need to have their descriptions confirmed
+
+ PyBabel
+ Pyglf
+ Support
+ Scenario
+
+* General changes
+
+ - lintian warns about copyright-without-copyright-notice, which
+ probably should be fixed.
+
+* Upstream, please consider to
+
+ - scenario: fix a few typos in the PKG-INFO and scenario/Readme
Modified: trunk/packages/mgltools/pybabel/trunk/debian/README.Debian
===================================================================
--- trunk/packages/mgltools/pybabel/trunk/debian/README.Debian 2008-05-19 16:48:00 UTC (rev 1897)
+++ trunk/packages/mgltools/pybabel/trunk/debian/README.Debian 2008-05-20 13:46:31 UTC (rev 1898)
@@ -1,16 +1,19 @@
mgltools-pybabel
================
-Lintian warns about the copyright-without-copyright-notice, which is an
-artifact of the source tar file being extracted from a larger tar file.
+This package is part of the MGL (Molecular Graphics Labs at Scripps)
+Python tools set for the computational and visual interaction
+of protein structures and their ligands. Lintian warns about the
+copyright-without-copyright-notice, which is an artifact of the source tar
+file being extracted from a larger tar file that represents the MGLtools.
The constraint to non-commercial research clearly renders the MGLtools
to be non-free and one could argue for it being acceptable for Debian at
all. SM was in contact with Sargis from the upstream developers and it
was confirmed that upstream is eager to see Debian packages to become
a reality. Actually, this may be a good opportunity to thank Sargis
-for his help in easing the compatibility with Debian by accepting our
-patches and providing more himself.
+Dallakyan <sargis at scripps.edu> for his help in easing the compatibility
+with Debian by accepting our patches and providing more himself.
If you are a regular user of this package, your feedback to us
packagers would much appreciated. The packaging is organised
Modified: trunk/packages/mgltools/pybabel/trunk/debian/README.source
===================================================================
--- trunk/packages/mgltools/pybabel/trunk/debian/README.source 2008-05-19 16:48:00 UTC (rev 1897)
+++ trunk/packages/mgltools/pybabel/trunk/debian/README.source 2008-05-20 13:46:31 UTC (rev 1898)
@@ -9,3 +9,5 @@
For the packaging of the AutoDockTool kit, the maintainers
have decided to package each module individually, to foster
the collaboration between similar applications.
+
+ -- Steffen Moeller <moeller at debian.org>
Modified: trunk/packages/mgltools/pybabel/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/pybabel/trunk/debian/control 2008-05-19 16:48:00 UTC (rev 1897)
+++ trunk/packages/mgltools/pybabel/trunk/debian/control 2008-05-20 13:46:31 UTC (rev 1898)
@@ -14,7 +14,7 @@
Architecture: all
Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}
Description: molecular structure file access and interpretation
- This package is part of the mgltools set of python libraries which
+ This package is part of the mgltools set of Python libraries which
provide an infrastructure for the analysis of protein structures and
their docking of chemical compounds.
.
Modified: trunk/packages/mgltools/pyglf/trunk/debian/README.Debian
===================================================================
--- trunk/packages/mgltools/pyglf/trunk/debian/README.Debian 2008-05-19 16:48:00 UTC (rev 1897)
+++ trunk/packages/mgltools/pyglf/trunk/debian/README.Debian 2008-05-20 13:46:31 UTC (rev 1898)
@@ -12,8 +12,8 @@
all. SM was in contact with Sargis from the upstream developers and it
was confirmed that upstream is eager to see Debian packages to become
a reality. Actually, this may be a good opportunity to thank Sargis
-for his help in easing the compatibility with Debian by accepting our
-patches and providing more himself.
+Dallakyan <sargis at scripps.edu> for his help in easing the compatibility
+with Debian by accepting our patches and providing more himself.
If you are a regular user of this package, your feedback to us
packagers would much appreciated. The packaging is organised
Added: trunk/packages/mgltools/scenario/trunk/debian/README.Debian
===================================================================
--- trunk/packages/mgltools/scenario/trunk/debian/README.Debian (rev 0)
+++ trunk/packages/mgltools/scenario/trunk/debian/README.Debian 2008-05-20 13:46:31 UTC (rev 1898)
@@ -0,0 +1,23 @@
+mgltools-scenario
+=================
+
+This package is part of the MGL (Molecular Graphics Labs at Scripps)
+Python tools set for the computational and visual interaction
+of protein structures and their ligands. Lintian warns about the
+copyright-without-copyright-notice, which is an artifact of the source tar
+file being extracted from a larger tar file that represents the MGLtools.
+
+The constraint to non-commercial research clearly renders the MGLtools
+to be non-free and one could argue for it being acceptable for Debian at
+all. SM was in contact with Sargis from the upstream developers and it
+was confirmed that upstream is eager to see Debian packages to become
+a reality. Actually, this may be a good opportunity to thank Sargis
+Dallakyan <sargis at scripps.edu> for his help in easing the compatibility
+with Debian by accepting our patches and providing more himself.
+
+If you are a regular user of this package, your feedback to us
+packagers would much appreciated. The packaging is organised
+via the Debian-Med alioth project that has its own portal on
+http://debian-med.alioth.debian.org.
+
+ -- Steffen Moeller <moeller at debian.org>
Added: trunk/packages/mgltools/scenario/trunk/debian/README.source
===================================================================
--- trunk/packages/mgltools/scenario/trunk/debian/README.source (rev 0)
+++ trunk/packages/mgltools/scenario/trunk/debian/README.source 2008-05-20 13:46:31 UTC (rev 1898)
@@ -0,0 +1,13 @@
+scenario
+========
+
+The URL presented in debian/watch guides to a tar file
+as the source distribution of the MGLtools set. That tar file
+has a subdirectory MGLPACKS that comprises many tar files
+itself, each representing a distinguished Python module.
+
+For the packaging of the AutoDockTool kit, the maintainers
+have decided to package each module individually, to foster
+the collaboration between similar applications.
+
+ -- Steffen Moeller <moeller at debian.org>
Modified: trunk/packages/mgltools/scenario/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/scenario/trunk/debian/changelog 2008-05-19 16:48:00 UTC (rev 1897)
+++ trunk/packages/mgltools/scenario/trunk/debian/changelog 2008-05-20 13:46:31 UTC (rev 1898)
@@ -1,10 +1,10 @@
-scenario (1.5.0.cvs.20080124) unstable; urgency=low
+scenario (1.5.1-1) experimental; urgency=low
* New upstream version.
- -- Steffen Moeller <moeller at debian.org> Wed, 23 Jan 2008 13:26:37 +0100
+ -- Steffen Moeller <moeller at debian.org> Tue, 20 May 2008 09:28:16 +0200
-scenario (1.5.0-1) unstable; urgency=low
+scenario (1.5.0-1) UNRELEASED; urgency=low
* Initial release.
Modified: trunk/packages/mgltools/scenario/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/scenario/trunk/debian/control 2008-05-19 16:48:00 UTC (rev 1897)
+++ trunk/packages/mgltools/scenario/trunk/debian/control 2008-05-20 13:46:31 UTC (rev 1898)
@@ -3,16 +3,21 @@
Priority: optional
Maintainer: Steffen Moeller <moeller at debian.org>
Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4.49), python-all-dev (>= 2.3.5-11)
-Standards-Version: 3.7.2
-XS-Python-Version: 2.4,2.5
+Standards-Version: 3.7.3
+XS-Python-Version: 2.5
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/scenario/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/mgltools/scenario/trunk/
Homepage: http://mgltools.scripps.edu/
Package: mgltools-scenario
XB-Python-Version: ${python:Versions}
Architecture: all
Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}, python-simpy
-Description: Python-based Molecular Viewer
- This package is needed by mgltools-autodocktools at runtime.
- It provides functionality for modifying Python objects over the
- course of time according to a scenario. A scenario is defined as a set
- of events taking place at spefic times.
+Description: Python-based viewer of molecular structures
+ This package is part of the mgltools set of Python libraries which
+ provide an infrastructure for the analysis of protein structures and
+ their docking of chemical compounds.
+ .
+ It provides functionality for modifying Python objects over the course
+ of time according to a scenario. A scenario is defined as a set of
+ events taking place at specific times.
Added: trunk/packages/mgltools/scenario/trunk/debian/watch
===================================================================
--- trunk/packages/mgltools/scenario/trunk/debian/watch (rev 0)
+++ trunk/packages/mgltools/scenario/trunk/debian/watch 2008-05-20 13:46:31 UTC (rev 1898)
@@ -0,0 +1,4 @@
+version=3
+# how should one do this?
+#http://mgltools.scripps.edu/downloads/tars/releases/REL1.5.1/mgltools_source_1.5.1.tar.gz
+http://mgltools.scripps.edu/downloads/tars/releases/REL1.5.1/mgltools_source_([0-9.]+).tar.gz
Added: trunk/packages/mgltools/sff/trunk/debian/README.Debian
===================================================================
--- trunk/packages/mgltools/sff/trunk/debian/README.Debian (rev 0)
+++ trunk/packages/mgltools/sff/trunk/debian/README.Debian 2008-05-20 13:46:31 UTC (rev 1898)
@@ -0,0 +1,23 @@
+mgltools-sff
+============
+
+This package is part of the MGL (Molecular Graphics Labs at Scripps)
+Python tools set for the computational and visual interaction
+of protein structures and their ligands. Lintian warns about the
+copyright-without-copyright-notice, which is an artifact of the source tar
+file being extracted from a larger tar file that represents the MGLtools.
+
+The constraint to non-commercial research clearly renders the MGLtools
+to be non-free and one could argue for it being acceptable for Debian at
+all. SM was in contact with Sargis from the upstream developers and it
+was confirmed that upstream is eager to see Debian packages to become
+a reality. Actually, this may be a good opportunity to thank Sargis
+Dallakyan <sargis at scripps.edu> for his help in easing the compatibility
+with Debian by accepting our patches and providing more himself.
+
+If you are a regular user of this package, your feedback to us
+packagers would much appreciated. The packaging is organised
+via the Debian-Med alioth project that has its own portal on
+http://debian-med.alioth.debian.org.
+
+ -- Steffen Moeller <moeller at debian.org>
Added: trunk/packages/mgltools/sff/trunk/debian/README.source
===================================================================
--- trunk/packages/mgltools/sff/trunk/debian/README.source (rev 0)
+++ trunk/packages/mgltools/sff/trunk/debian/README.source 2008-05-20 13:46:31 UTC (rev 1898)
@@ -0,0 +1,13 @@
+sff
+===
+
+The URL presented in debian/watch guides to a tar file
+as the source distribution of the MGLtools set. That tar file
+has a subdirectory MGLPACKS that comprises many tar files
+itself, each representing a distinguished Python module.
+
+For the packaging of the AutoDockTool kit, the maintainers
+have decided to package each module individually, to foster
+the collaboration between similar applications.
+
+ -- Steffen Moeller <moeller at debian.org>
Modified: trunk/packages/mgltools/sff/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/sff/trunk/debian/changelog 2008-05-19 16:48:00 UTC (rev 1897)
+++ trunk/packages/mgltools/sff/trunk/debian/changelog 2008-05-20 13:46:31 UTC (rev 1898)
@@ -1,8 +1,8 @@
-sff (1.5.0.cvs.20080122) unstable; urgency=low
+sff (1.5.1-1) experimental; urgency=low
* New upstream version.
- -- Steffen Moeller <steffen_moeller at gmx.de> Wed, 23 Jan 2008 13:26:38 +0100
+ -- Steffen Moeller <moeller at debian.org> Tue, 20 May 2008 11:11:10 +0200
sff (1.5.0-1) unstable; urgency=low
Modified: trunk/packages/mgltools/sff/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/sff/trunk/debian/control 2008-05-19 16:48:00 UTC (rev 1897)
+++ trunk/packages/mgltools/sff/trunk/debian/control 2008-05-20 13:46:31 UTC (rev 1898)
@@ -4,12 +4,19 @@
Maintainer: Steffen Moeller <moeller at debian.org>
Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4.49), python-all-dev (>= 2.3.5-11), swig (>= 1.3.20), python-numpy
Standards-Version: 3.7.3
-XS-Python-Version: 2.4,2.5
+XS-Python-Version: 2.5
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/sff/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/mgltools/sff/trunk/
Homepage: http://mgltools.scripps.edu/
Package: mgltools-sff
XB-Python-Version: ${python:Versions}
Architecture: any
-Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}
+Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}, python-numpy
Description: Simple Force Field for Python
- The library is needed by mgltools-autodocktools at runtime.
+ This package is part of the mgltools set of Python libraries which
+ provide an infrastructure for the analysis of protein structures and
+ their docking of chemical compounds.
+ .
+ It implements an Amber force field with an interface to a molecular
+ dynamics engine.
Added: trunk/packages/mgltools/sff/trunk/debian/watch
===================================================================
--- trunk/packages/mgltools/sff/trunk/debian/watch (rev 0)
+++ trunk/packages/mgltools/sff/trunk/debian/watch 2008-05-20 13:46:31 UTC (rev 1898)
@@ -0,0 +1,4 @@
+version=3
+# how should one do this?
+#http://mgltools.scripps.edu/downloads/tars/releases/REL1.5.1/mgltools_source_1.5.1.tar.gz
+http://mgltools.scripps.edu/downloads/tars/releases/REL1.5.1/mgltools_source_([0-9.]+).tar.gz
Added: trunk/packages/mgltools/support/trunk/debian/README.Debian
===================================================================
--- trunk/packages/mgltools/support/trunk/debian/README.Debian (rev 0)
+++ trunk/packages/mgltools/support/trunk/debian/README.Debian 2008-05-20 13:46:31 UTC (rev 1898)
@@ -0,0 +1,23 @@
+mgltools-support
+================
+
+This package is part of the MGL (Molecular Graphics Labs at Scripps)
+Python tools set for the computational and visual interaction
+of protein structures and their ligands. Lintian warns about the
+copyright-without-copyright-notice, which is an artifact of the source tar
+file being extracted from a larger tar file that represents the MGLtools.
+
+The constraint to non-commercial research clearly renders the MGLtools
+to be non-free and one could argue for it being acceptable for Debian at
+all. SM was in contact with Sargis from the upstream developers and it
+was confirmed that upstream is eager to see Debian packages to become
+a reality. Actually, this may be a good opportunity to thank Sargis
+Dallakyan <sargis at scripps.edu> for his help in easing the compatibility
+with Debian by accepting our patches and providing more himself.
+
+If you are a regular user of this package, your feedback to us
+packagers would much appreciated. The packaging is organised
+via the Debian-Med alioth project that has its own portal on
+http://debian-med.alioth.debian.org.
+
+ -- Steffen Moeller <moeller at debian.org>
Added: trunk/packages/mgltools/support/trunk/debian/README.source
===================================================================
--- trunk/packages/mgltools/support/trunk/debian/README.source (rev 0)
+++ trunk/packages/mgltools/support/trunk/debian/README.source 2008-05-20 13:46:31 UTC (rev 1898)
@@ -0,0 +1,13 @@
+Support
+=======
+
+The URL presented in debian/watch guides to a tar file
+as the source distribution of the MGLtools set. That tar file
+has a subdirectory MGLPACKS that comprises many tar files
+itself, each representing a distinguished Python module.
+
+For the packaging of the AutoDockTool kit, the maintainers
+have decided to package each module individually, to foster
+the collaboration between similar applications.
+
+ -- Steffen Moeller <moeller at debian.org>
Modified: trunk/packages/mgltools/support/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/support/trunk/debian/changelog 2008-05-19 16:48:00 UTC (rev 1897)
+++ trunk/packages/mgltools/support/trunk/debian/changelog 2008-05-20 13:46:31 UTC (rev 1898)
@@ -1,8 +1,8 @@
-support (1.5.0.cvs.20080124) unstable; urgency=low
+support (1.5.1-1) experimental; urgency=low
* New upstream version.
- -- Steffen Moeller <moeller at debian.org> Wed, 23 Jan 2008 13:26:38 +0100
+ -- Steffen Moeller <moeller at debian.org> Mon, 19 May 2008 19:20:24 +0200
support (1.5.0-1) unstable; urgency=low
Modified: trunk/packages/mgltools/support/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/support/trunk/debian/control 2008-05-19 16:48:00 UTC (rev 1897)
+++ trunk/packages/mgltools/support/trunk/debian/control 2008-05-20 13:46:31 UTC (rev 1898)
@@ -3,8 +3,10 @@
Priority: optional
Maintainer: Steffen Moeller <moeller at debian.org>
Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4.49), python-all-dev (>= 2.3.5-11)
-Standards-Version: 3.7.2
-XS-Python-Version: 2.4, 2.5
+Standards-Version: 3.7.3
+XS-Python-Version: 2.5
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/pyglf/support/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/mgltools/support/trunk/
Homepage: http://mgltools.scripps.edu/
Package: mgltools-support
@@ -13,4 +15,9 @@
Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}
Suggests: autodock
Description: Update mechanism of MGLTools
- The library is needed by mgltools-autodocktools at runtime.
+ This package is part of the mgltools set of Python libraries which
+ provide an infrastructure for the analysis of protein structures and
+ their docking of chemical compounds.
+ .
+ It provides a mechanism for an automated update of the MGLtools
+ that was not yet checked on compatibility with the Debian packages.
Added: trunk/packages/mgltools/support/trunk/debian/copyright
===================================================================
--- trunk/packages/mgltools/support/trunk/debian/copyright (rev 0)
+++ trunk/packages/mgltools/support/trunk/debian/copyright 2008-05-20 13:46:31 UTC (rev 1898)
@@ -0,0 +1,46 @@
+This package was debianized by Steffen Moeller <moeller at debian.org> on
+Thu, 20 Dec 2007 16:27:31 +0100.
+
+It was downloaded from http://mdltools.scripps.edu
+
+Upstream Authors:
+
+ Molecular Graphics Laboratory <mgltools at scripps.edu>
+
+Copyright:
+
+ THE SCRIPPS RESEARCH INSTITUTE, <sanner at scripps.edu>
+
+License:
+
+ PLEASE READ THIS DOCUMENT CAREFULLY. IF YOU AGREE WITH THE TERMS
+ AND CONDITIONS OF THIS LICENSE AGREEMENT, AND WISH TO RECEIVE AND
+ USE THIS SOFTWARE.
+
+ 1. Grant Of Limited License; Software Use Restrictions. The programs
+ received by you will be used only for NON COMMERCIAL SCIENTIFIC
+ RESEARCH. This license is issued to you as an individual. For
+ institution wide use or commercial use of the software you will
+ have to follow the official registration procedure. To do so you can
+ contact us by e-mail (sanner at scripps.edu), by mail (Michel Sanner,
+ TSRI, Molecular Biology Department, MB5, 10666 North Torrey Pines
+ Road, 92037 La Jolla) or by fax (858) 784-2860.
+
+ Some of the components have their own licensing specificities
+ that are described in the README file that is generated when you
+ download the software. We request that you read the content of
+ this file and comply to the requirements.
+ 2. Copying Restrictions. You will not sell or otherwise transfer these
+ programs or derivatives to any other party, whether with or
+ without consideration, for any purpose.
+ 3. Ownership of Software. You will not obtain, and will not attempt to
+ obtain copyright coverage thereon without the express purpose
+ written consent of The Scripps Research Institute.
+ 4. Limitation Of Liability. You will hold harmless from all or any expenses
+ you may incur as a result of or arising from your use, direct or indirect,
+ of these materials. You understand that no other right or license
+ to this program or its derivatives is granted or implied as a
+ result of our transmission of same to you.
+
+The Debian packaging is (C) 2007, Steffen Moeller <moeller at debian.org> and
+is licensed under the GPL, see `/usr/share/common-licenses/GPL'.
Added: trunk/packages/mgltools/support/trunk/debian/watch
===================================================================
--- trunk/packages/mgltools/support/trunk/debian/watch (rev 0)
+++ trunk/packages/mgltools/support/trunk/debian/watch 2008-05-20 13:46:31 UTC (rev 1898)
@@ -0,0 +1,4 @@
+version=3
+# how should one do this?
+#http://mgltools.scripps.edu/downloads/tars/releases/REL1.5.1/mgltools_source_1.5.1.tar.gz
+http://mgltools.scripps.edu/downloads/tars/releases/REL1.5.1/mgltools_source_([0-9.]+).tar.gz
Added: trunk/packages/mgltools/utpackages/trunk/debian/README.Debian
===================================================================
--- trunk/packages/mgltools/utpackages/trunk/debian/README.Debian (rev 0)
+++ trunk/packages/mgltools/utpackages/trunk/debian/README.Debian 2008-05-20 13:46:31 UTC (rev 1898)
@@ -0,0 +1,23 @@
+mgltools-utpackages
+===================
+
+This package is part of the MGL (Molecular Graphics Labs at Scripps)
+Python tools set for the computational and visual interaction
+of protein structures and their ligands. Lintian warns about the
+copyright-without-copyright-notice, which is an artifact of the source tar
+file being extracted from a larger tar file that represents the MGLtools.
+
+The constraint to non-commercial research clearly renders the MGLtools
+to be non-free and one could argue for it being acceptable for Debian at
+all. SM was in contact with Sargis from the upstream developers and it
+was confirmed that upstream is eager to see Debian packages to become
+a reality. Actually, this may be a good opportunity to thank Sargis
+Dallakyan <sargis at scripps.edu> for his help in easing the compatibility
+with Debian by accepting our patches and providing more himself.
+
+If you are a regular user of this package, your feedback to us
+packagers would much appreciated. The packaging is organised
+via the Debian-Med alioth project that has its own portal on
+http://debian-med.alioth.debian.org.
+
+ -- Steffen Moeller <moeller at debian.org>
Added: trunk/packages/mgltools/utpackages/trunk/debian/README.source
===================================================================
--- trunk/packages/mgltools/utpackages/trunk/debian/README.source (rev 0)
+++ trunk/packages/mgltools/utpackages/trunk/debian/README.source 2008-05-20 13:46:31 UTC (rev 1898)
@@ -0,0 +1,13 @@
+UTpackages
+==========
+
+The URL presented in debian/watch guides to a tar file
+as the source distribution of the MGLtools set. That tar file
+has a subdirectory MGLPACKS that comprises many tar files
+itself, each representing a distinguished Python module.
+
+For the packaging of the AutoDockTool kit, the maintainers
+have decided to package each module individually, to foster
+the collaboration between similar applications.
+
+ -- Steffen Moeller <moeller at debian.org>
Modified: trunk/packages/mgltools/utpackages/trunk/debian/changelog
===================================================================
--- trunk/packages/mgltools/utpackages/trunk/debian/changelog 2008-05-19 16:48:00 UTC (rev 1897)
+++ trunk/packages/mgltools/utpackages/trunk/debian/changelog 2008-05-20 13:46:31 UTC (rev 1898)
@@ -1,8 +1,8 @@
-utpackages (1.5.0.cvs.20080122) unstable; urgency=low
+utpackages (1.5.1-1) experimental; urgency=low
* New upstream version.
- -- Steffen Moeller <steffen_moeller at gmx.de> Wed, 23 Jan 2008 13:26:39 +0100
+ -- Steffen Moeller <moeller at debian.org> Wed, 23 Jan 2008 13:26:39 +0100
utpackages (1.5.0-1) unstable; urgency=low
Modified: trunk/packages/mgltools/utpackages/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/utpackages/trunk/debian/control 2008-05-19 16:48:00 UTC (rev 1897)
+++ trunk/packages/mgltools/utpackages/trunk/debian/control 2008-05-20 13:46:31 UTC (rev 1898)
@@ -3,8 +3,10 @@
Priority: optional
Maintainer: Steffen Moeller <moeller at debian.org>
Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>= 0.4.49), python-all-dev (>= 2.3.5-11), swig
-Standards-Version: 3.7.2
-XS-Python-Version: current
+Standards-Version: 3.7.3
+XS-Python-Version: 2.5
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/pybabel/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/mgltools/pybabel/trunk/
Homepage: http://mgltools.scripps.edu/
Package: mgltools-utpackages
@@ -12,4 +14,10 @@
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}
Description: UT Austin software Python extensions
- The library is needed by mgltools-autodocktools at runtime.
+ This package is part of the mgltools set of Python libraries which
+ provide an infrastructure for the analysis of protein structures and
+ their docking of chemical compounds.
+ .
+ It contains a series of modules that help that are of general utility, to
+ work with volume data, i.e. UTblur, UTisocontour, UTvolrend and UTmesh.
+
Modified: trunk/packages/mgltools/utpackages/trunk/debian/dirs
===================================================================
--- trunk/packages/mgltools/utpackages/trunk/debian/dirs 2008-05-19 16:48:00 UTC (rev 1897)
+++ trunk/packages/mgltools/utpackages/trunk/debian/dirs 2008-05-20 13:46:31 UTC (rev 1898)
@@ -1,2 +1 @@
-/usr/bin
/usr/share
Added: trunk/packages/mgltools/utpackages/trunk/debian/watch
===================================================================
--- trunk/packages/mgltools/utpackages/trunk/debian/watch (rev 0)
+++ trunk/packages/mgltools/utpackages/trunk/debian/watch 2008-05-20 13:46:31 UTC (rev 1898)
@@ -0,0 +1,4 @@
+version=3
+# how should one do this?
+#http://mgltools.scripps.edu/downloads/tars/releases/REL1.5.1/mgltools_source_1.5.1.tar.gz
+http://mgltools.scripps.edu/downloads/tars/releases/REL1.5.1/mgltools_source_([0-9.]+).tar.gz
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