[med-svn] r4449 - trunk/packages/hmmer/trunk/debian

[Charles Plessy]

Author: plessy
Date: 2009-12-16 04:53:15 +0000 (Wed, 16 Dec 2009)
New Revision: 4449

Added:
   trunk/packages/hmmer/trunk/debian/upstream-metadata.yaml
Modified:
   trunk/packages/hmmer/trunk/debian/README.Debian
   trunk/packages/hmmer/trunk/debian/changelog
   trunk/packages/hmmer/trunk/debian/compat
   trunk/packages/hmmer/trunk/debian/control
   trunk/packages/hmmer/trunk/debian/rules
Log:
Packages enhancements, not enough to trigger an upload.

  * Enabled upstream checks in debian/rules.
  * Documented how the package is tested in debian/README.Debian
  * Switched Debhelper to mode 7 (debian/compat, debian/control).
  * Gathered some metadata about upstream in debian/upstream-metadata.yaml.
  * Checked conformance with Policy 3.8.3 and incremented Standards-Version
    in debian/control to reflect it.


Modified: trunk/packages/hmmer/trunk/debian/README.Debian
===================================================================
--- trunk/packages/hmmer/trunk/debian/README.Debian	2009-12-14 05:17:47 UTC (rev 4448)
+++ trunk/packages/hmmer/trunk/debian/README.Debian	2009-12-16 04:53:15 UTC (rev 4449)
@@ -4,3 +4,12 @@
 This hmmer package has been built with POSIX multithreading support (--enable-threads), Large File Support (--enable-lfs) and Parallel Virtual Machine (--enable-pvm) enabled.
 
  -- Nelson A. de Oliveira <naoliv at gmail.com>  Tue, 08 Aug 2006 23:07:12 -0300
+
+
+Notes on how this pacakge is tested:
+
+The HMMER programs are tested when we assemble our binary packages in our build
+network, using the standard upstream tests. You can consult the results in the
+build logs: ‘http://buildd.debian.org/hmmer’.
+
+ -- Charles Plessy <plessy at debian.org>  Wed, 16 Dec 2009 13:52:24 +0900

Modified: trunk/packages/hmmer/trunk/debian/changelog
===================================================================
--- trunk/packages/hmmer/trunk/debian/changelog	2009-12-14 05:17:47 UTC (rev 4448)
+++ trunk/packages/hmmer/trunk/debian/changelog	2009-12-16 04:53:15 UTC (rev 4449)
@@ -1,3 +1,14 @@
+hmmer (2.3.2-6) UNRELEASED; urgency=low
+
+  * Enabled upstream checks in debian/rules.
+  * Documented how the package is tested in debian/README.Debian
+  * Switched Debhelper to mode 7 (debian/compat, debian/control).
+  * Gathered some metadata about upstream in debian/upstream-metadata.yaml.
+  * Checked conformance with Policy 3.8.3 and incremented Standards-Version
+    in debian/control to reflect it.
+
+ -- Charles Plessy <plessy at debian.org>  Wed, 16 Dec 2009 13:21:02 +0900
+
 hmmer (2.3.2-5) unstable; urgency=low
 
   * Changed the doc-base section according to the new policy.

Modified: trunk/packages/hmmer/trunk/debian/compat
===================================================================
--- trunk/packages/hmmer/trunk/debian/compat	2009-12-14 05:17:47 UTC (rev 4448)
+++ trunk/packages/hmmer/trunk/debian/compat	2009-12-16 04:53:15 UTC (rev 4449)
@@ -1 +1 @@
-5
+7

Modified: trunk/packages/hmmer/trunk/debian/control
===================================================================
--- trunk/packages/hmmer/trunk/debian/control	2009-12-14 05:17:47 UTC (rev 4448)
+++ trunk/packages/hmmer/trunk/debian/control	2009-12-16 04:53:15 UTC (rev 4449)
@@ -7,8 +7,8 @@
  Nelson A. de Oliveira <naoliv at debian.org>,
  Andreas Tille <tille at debian.org>,
  Charles Plessy <plessy at debian.org>
-Build-Depends: cdbs, debhelper (>= 5), pvm-dev, autotools-dev
-Standards-Version: 3.8.0
+Build-Depends: cdbs, debhelper (>= 7), pvm-dev, autotools-dev
+Standards-Version: 3.8.3
 Homepage: http://hmmer.janelia.org/
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/hmmer/trunk/?rev=0&sc=0
 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/hmmer/trunk/

Modified: trunk/packages/hmmer/trunk/debian/rules
===================================================================
--- trunk/packages/hmmer/trunk/debian/rules	2009-12-14 05:17:47 UTC (rev 4448)
+++ trunk/packages/hmmer/trunk/debian/rules	2009-12-16 04:53:15 UTC (rev 4449)
@@ -5,3 +5,4 @@
 
 DEB_CONFIGURE_EXTRA_FLAGS := --enable-threads --enable-lfs --enable-pvm
 DEB_MAKE_INSTALL_TARGET := install prefix=$(CURDIR)/debian/tmp
+DEB_MAKE_CHECK_TARGET = check

Added: trunk/packages/hmmer/trunk/debian/upstream-metadata.yaml
===================================================================
--- trunk/packages/hmmer/trunk/debian/upstream-metadata.yaml	                        (rev 0)
+++ trunk/packages/hmmer/trunk/debian/upstream-metadata.yaml	2009-12-16 04:53:15 UTC (rev 4449)
@@ -0,0 +1,15 @@
+Contact: http://selab.janelia.org/people/eddys/contact.html
+DOI = 10.1093/bioinformatics/14.9.755
+Name: HMMER
+Homepage: http://hmmer.janelia.org
+PubMed: 9918945
+Reference:
+  Author: Eddy, SR
+  Title: Profile hidden Markov models
+  Journal: Bioinformatics
+  Volume: 14
+  Number: 9
+  Pages: 755-763
+  Year: 1998
+  URL: http://bioinformatics.oxfordjournals.org/cgi/content/abstract/14/9/755
+Watch: ftp://selab.janelia.org/pub/software/hmmer/CURRENT/hmmer-([0-9\.]*)\.tar\.gz