[med-svn] r3640 - trunk/packages/emboss/trunk/debian

[Charles Plessy]

Author: plessy
Date: 2009-07-15 14:57:05 +0000 (Wed, 15 Jul 2009)
New Revision: 3640

Modified:
   trunk/packages/emboss/trunk/debian/build-manpages.sh
   trunk/packages/emboss/trunk/debian/changelog
   trunk/packages/emboss/trunk/debian/emboss.manpages
Log:
New upstream release.


Modified: trunk/packages/emboss/trunk/debian/build-manpages.sh
===================================================================
--- trunk/packages/emboss/trunk/debian/build-manpages.sh	2009-07-15 13:10:24 UTC (rev 3639)
+++ trunk/packages/emboss/trunk/debian/build-manpages.sh	2009-07-15 14:57:05 UTC (rev 3640)
@@ -14,7 +14,7 @@
   do
   ACD=$(basename $FILE .acd)
   tar --verbose --gzip --file $ORIGTARGZ --extract $FILE --to-stdout \
-  | ../../emboss/trunk/debian/acd2docbook.pl /dev/stdin ${VERSION} \
+  | ./debian/acd2docbook.pl /dev/stdin ${VERSION} \
   | xsltproc --nonet --param man.charmap.use.subset 0 -o debian/manpages/ -
   echo "debian/manpages/$ACD.1e" >> debian/$PACKAGE.manpages
 done

Modified: trunk/packages/emboss/trunk/debian/changelog
===================================================================
--- trunk/packages/emboss/trunk/debian/changelog	2009-07-15 13:10:24 UTC (rev 3639)
+++ trunk/packages/emboss/trunk/debian/changelog	2009-07-15 14:57:05 UTC (rev 3640)
@@ -1,9 +1,10 @@
-emboss (6.1.0~rc2-1) UNRELEASED; urgency=low
+emboss (6.1.0-1) unstable; urgency=low
 
-  * New upstream relase candidate (Closes: #530112).
+  * New upstream relase (Closes: #530112).
   * Dropped patch against previous release.
+  * Created or refreshed the manpages.
 
- -- Charles Plessy <plessy at debian.org>  Wed, 08 Jul 2009 19:33:35 +0900
+ -- Charles Plessy <plessy at debian.org>  Wed, 15 Jul 2009 23:15:26 +0900
 
 emboss (6.0.1-11) unstable; urgency=low
 

Modified: trunk/packages/emboss/trunk/debian/emboss.manpages
===================================================================
--- trunk/packages/emboss/trunk/debian/emboss.manpages	2009-07-15 13:10:24 UTC (rev 3639)
+++ trunk/packages/emboss/trunk/debian/emboss.manpages	2009-07-15 14:57:05 UTC (rev 3640)
@@ -1,221 +1,226 @@
-debian/manpages/dbxgcg.1e
-debian/manpages/freak.1e
-debian/manpages/est2genome.1e
-debian/manpages/union.1e
-debian/manpages/dbxflat.1e
-debian/manpages/degapseq.1e
-debian/manpages/backtranambig.1e
-debian/manpages/geecee.1e
-debian/manpages/cirdna.1e
-debian/manpages/skipseq.1e
+debian/manpages/splitsource.1e
+debian/manpages/cons.1e
+debian/manpages/seqretset.1e
+debian/manpages/edialign.1e
+debian/manpages/seqret.1e
+debian/manpages/palindrome.1e
+debian/manpages/fuzztran.1e
+debian/manpages/histogramtest.1e
+debian/manpages/pepwindowall.1e
+debian/manpages/cutseq.1e
+debian/manpages/acdpretty.1e
+debian/manpages/antigenic.1e
+debian/manpages/printsextract.1e
+debian/manpages/nospace.1e
+debian/manpages/demostringnew.1e
+debian/manpages/codcopy.1e
+debian/manpages/nthseqset.1e
+debian/manpages/getorf.1e
+debian/manpages/demotable.1e
+debian/manpages/aligncopy.1e
+debian/manpages/prosextract.1e
+debian/manpages/noreturn.1e
+debian/manpages/cusp.1e
+debian/manpages/fuzzpro.1e
+debian/manpages/patmatmotifs.1e
+debian/manpages/wordfinder.1e
+debian/manpages/corbatest.1e
+debian/manpages/jaspscan.1e
 debian/manpages/trimspace.1e
-debian/manpages/distmat.1e
-debian/manpages/wossname.1e
-debian/manpages/demoreport.1e
-debian/manpages/isochore.1e
+debian/manpages/matcher.1e
+debian/manpages/whichdb.1e
 debian/manpages/findkm.1e
-debian/manpages/merger.1e
-debian/manpages/rebaseextract.1e
-debian/manpages/edialign.1e
-debian/manpages/giep.1e
-debian/manpages/banana.1e
-debian/manpages/mwfilter.1e
-debian/manpages/plotcon.1e
-debian/manpages/demoalign.1e
-debian/manpages/revseq.1e
-debian/manpages/entret.1e
+debian/manpages/extractalign.1e
+debian/manpages/primers.1e
+debian/manpages/tmap.1e
+debian/manpages/checktrans.1e
+debian/manpages/embossdata.1e
+debian/manpages/restrict.1e
+debian/manpages/sirna.1e
+debian/manpages/pepwheel.1e
+debian/manpages/showfeat.1e
+debian/manpages/pepnet.1e
+debian/manpages/origunion.1e
+debian/manpages/stssearch.1e
+debian/manpages/cirdna.1e
+debian/manpages/prettyplot.1e
+debian/manpages/aaindexextract.1e
+debian/manpages/pepwindow.1e
+debian/manpages/ajbad.1e
+debian/manpages/testplot.1e
+debian/manpages/dbxreport.1e
+debian/manpages/density.1e
+debian/manpages/descseq.1e
+debian/manpages/splitter.1e
+debian/manpages/etandem.1e
+debian/manpages/twofeat.1e
 debian/manpages/pasteseq.1e
-debian/manpages/intconv.1e
-debian/manpages/jaspextract.1e
-debian/manpages/supermatcher.1e
-debian/manpages/aaindexextract.1e
-debian/manpages/dotmatcher.1e
-debian/manpages/embossdata.1e
-debian/manpages/needle.1e
-debian/manpages/patmatdb.1e
-debian/manpages/trimest.1e
-debian/manpages/mwcontam.1e
-debian/manpages/primers.1e
-debian/manpages/noreturn.1e
-debian/manpages/syco.1e
-debian/manpages/cai.1e
-debian/manpages/msbar.1e
+debian/manpages/oddcomp.1e
 debian/manpages/showalign.1e
-debian/manpages/acdpretty.1e
-debian/manpages/infoalign.1e
-debian/manpages/makeprotseq.1e
-debian/manpages/etandem.1e
-debian/manpages/redata.1e
-debian/manpages/demotable.1e
-debian/manpages/nospace.1e
-debian/manpages/dbxstat.1e
-debian/manpages/megamerger.1e
-debian/manpages/density.1e
-debian/manpages/newseq.1e
-debian/manpages/helixturnhelix.1e
-debian/manpages/jaspscan.1e
+debian/manpages/entret.1e
+debian/manpages/maskfeat.1e
+debian/manpages/garnier.1e
+debian/manpages/wordmatch.1e
+debian/manpages/stretcher.1e
+debian/manpages/water.1e
+debian/manpages/dbxgcg.1e
+debian/manpages/textsearch.1e
+debian/manpages/preg.1e
+debian/manpages/emma.1e
+debian/manpages/seqrettype.1e
+debian/manpages/sixpack.1e
+debian/manpages/plotcon.1e
+debian/manpages/sizeseq.1e
 debian/manpages/tfscan.1e
-debian/manpages/transeq.1e
-debian/manpages/demolist.1e
-debian/manpages/cutgextract.1e
-debian/manpages/seealso.1e
-debian/manpages/showseq.1e
-debian/manpages/patmatmotifs.1e
-debian/manpages/printsextract.1e
-debian/manpages/splitter.1e
-debian/manpages/compseq.1e
-debian/manpages/showdb.1e
-debian/manpages/prettyplot.1e
-debian/manpages/palindrome.1e
-debian/manpages/demostring.1e
-debian/manpages/remap.1e
-debian/manpages/equicktandem.1e
-debian/manpages/yank.1e
+debian/manpages/inforesidue.1e
+debian/manpages/backtranseq.1e
+debian/manpages/prophecy.1e
+debian/manpages/mwfilter.1e
+debian/manpages/intconv.1e
 debian/manpages/iep.1e
-debian/manpages/plotorf.1e
+debian/manpages/chips.1e
+debian/manpages/skipredundant.1e
 debian/manpages/acdlog.1e
+debian/manpages/dbigcg.1e
+debian/manpages/backtranambig.1e
+debian/manpages/cpgplot.1e
+debian/manpages/wobble.1e
+debian/manpages/distmat.1e
+debian/manpages/dreg.1e
+debian/manpages/pepstats.1e
 debian/manpages/acdvalid.1e
-debian/manpages/embossversion.1e
-debian/manpages/wordmatch.1e
-debian/manpages/pepstats.1e
-debian/manpages/inforesidue.1e
-debian/manpages/twofeat.1e
-debian/manpages/digest.1e
-debian/manpages/dreg.1e
-debian/manpages/stretcher.1e
-debian/manpages/prosextract.1e
-debian/manpages/featreport.1e
+debian/manpages/showpep.1e
+debian/manpages/rebaseextract.1e
+debian/manpages/coderet.1e
+debian/manpages/dbxstat.1e
+debian/manpages/plotorf.1e
+debian/manpages/seqretallfeat.1e
+debian/manpages/seqretsplit.1e
+debian/manpages/prima.1e
+debian/manpages/treetypedisplay.1e
+debian/manpages/profit.1e
+debian/manpages/showseq.1e
+debian/manpages/degapseq.1e
+debian/manpages/dbxfasta.1e
+debian/manpages/freak.1e
+debian/manpages/eprimer3.1e
+debian/manpages/patmattest.1e
+debian/manpages/patmatdb.1e
+debian/manpages/infobase.1e
+debian/manpages/merger.1e
+debian/manpages/wordcount.1e
+debian/manpages/listor.1e
+debian/manpages/notseq.1e
+debian/manpages/demosequence.1e
 debian/manpages/infoseq.1e
-debian/manpages/coderet.1e
+debian/manpages/sigcleave.1e
 debian/manpages/nohtml.1e
-debian/manpages/fuzzpro.1e
-debian/manpages/dottup.1e
-debian/manpages/recoder.1e
+debian/manpages/seqretsingle.1e
+debian/manpages/prophet.1e
+debian/manpages/pepcoil.1e
+debian/manpages/cpgreport.1e
+debian/manpages/syco.1e
+debian/manpages/maskambignuc.1e
+debian/manpages/btwisted.1e
+debian/manpages/silent.1e
+debian/manpages/mwcontam.1e
+debian/manpages/diffseq.1e
+debian/manpages/pepinfo.1e
+debian/manpages/redata.1e
+debian/manpages/maskambigprot.1e
 debian/manpages/primersearch.1e
-debian/manpages/newcpgreport.1e
-debian/manpages/prima.1e
-debian/manpages/water.1e
-debian/manpages/showfeat.1e
-debian/manpages/fuzznuc.1e
-debian/manpages/cpgreport.1e
-debian/manpages/dbigcg.1e
-debian/manpages/prophet.1e
+debian/manpages/infoalign.1e
+debian/manpages/emowse.1e
+debian/manpages/needle.1e
+debian/manpages/dbxflat.1e
+debian/manpages/compseq.1e
+debian/manpages/acdtrace.1e
+debian/manpages/megamerger.1e
+debian/manpages/msbar.1e
+debian/manpages/newcpgseek.1e
+debian/manpages/ajfeatest.1e
 debian/manpages/epestfind.1e
-debian/manpages/seqmatchall.1e
-debian/manpages/shuffleseq.1e
-debian/manpages/tmap.1e
-debian/manpages/histogramtest.1e
-debian/manpages/newcpgseek.1e
-debian/manpages/eprimer3.1e
+debian/manpages/demofeatures.1e
+debian/manpages/dottup.1e
+debian/manpages/newcoils.1e
+debian/manpages/tfextract.1e
+debian/manpages/dbiflat.1e
 debian/manpages/einverted.1e
-debian/manpages/antigenic.1e
-debian/manpages/pepnet.1e
-debian/manpages/acdtrace.1e
-debian/manpages/seqretallfeat.1e
-debian/manpages/aligncopypair.1e
+debian/manpages/demoreport.1e
+debian/manpages/dbifasta.1e
 debian/manpages/dan.1e
+debian/manpages/union.1e
+debian/manpages/tranalign.1e
+debian/manpages/seqmatchall.1e
+debian/manpages/origsplitter.1e
+debian/manpages/makeprotseq.1e
+debian/manpages/trimseq.1e
+debian/manpages/demoalign.1e
+debian/manpages/dotmatcher.1e
+debian/manpages/octanol.1e
+debian/manpages/showorf.1e
+debian/manpages/cutgextract.1e
+debian/manpages/complex.1e
+debian/manpages/trimest.1e
+debian/manpages/tfm.1e
+debian/manpages/dbiblast.1e
+debian/manpages/revseq.1e
+debian/manpages/makenucseq.1e
+debian/manpages/biosed.1e
+debian/manpages/yank.1e
+debian/manpages/extractseq.1e
+debian/manpages/abiview.1e
+debian/manpages/est2genome.1e
+debian/manpages/giep.1e
+debian/manpages/acdc.1e
+debian/manpages/polydot.1e
+debian/manpages/transeq.1e
+debian/manpages/featreport.1e
 debian/manpages/vectorstrip.1e
+debian/manpages/pscan.1e
+debian/manpages/psiphi.1e
+debian/manpages/embossversion.1e
+debian/manpages/maskseq.1e
+debian/manpages/prettyseq.1e
+debian/manpages/newseq.1e
+debian/manpages/banana.1e
+debian/manpages/entrails.1e
+debian/manpages/recoder.1e
+debian/manpages/consambig.1e
+debian/manpages/aligncopypair.1e
+debian/manpages/wossname.1e
 debian/manpages/featcopy.1e
-debian/manpages/emowse.1e
-debian/manpages/demofeatures.1e
-debian/manpages/notab.1e
-debian/manpages/newcoils.1e
-debian/manpages/abiview.1e
-debian/manpages/cusp.1e
 debian/manpages/chaos.1e
-debian/manpages/maskfeat.1e
-debian/manpages/dbifasta.1e
-debian/manpages/pepinfo.1e
 debian/manpages/acdtable.1e
-debian/manpages/cons.1e
-debian/manpages/polydot.1e
-debian/manpages/profit.1e
+debian/manpages/charge.1e
+debian/manpages/extractfeat.1e
+debian/manpages/hmoment.1e
+debian/manpages/remap.1e
+debian/manpages/isochore.1e
+debian/manpages/digest.1e
+debian/manpages/equicktandem.1e
 debian/manpages/lindna.1e
-debian/manpages/hmoment.1e
-debian/manpages/diffseq.1e
-debian/manpages/listor.1e
-debian/manpages/descseq.1e
-debian/manpages/dotpath.1e
-debian/manpages/charge.1e
-debian/manpages/dbxfasta.1e
-debian/manpages/preg.1e
-debian/manpages/wobble.1e
-debian/manpages/entrails.1e
-debian/manpages/backtranseq.1e
-debian/manpages/ajbad.1e
-debian/manpages/treetypedisplay.1e
-debian/manpages/psiphi.1e
-debian/manpages/wordfinder.1e
-debian/manpages/origunion.1e
-debian/manpages/fuzztran.1e
-debian/manpages/marscan.1e
-debian/manpages/skipredundant.1e
-debian/manpages/pepwindowall.1e
-debian/manpages/maskambignuc.1e
+debian/manpages/helixturnhelix.1e
 debian/manpages/codcmp.1e
-debian/manpages/corbatest.1e
-debian/manpages/silent.1e
-debian/manpages/sigcleave.1e
-debian/manpages/sixpack.1e
-debian/manpages/makenucseq.1e
-debian/manpages/getorf.1e
-debian/manpages/prettyseq.1e
-debian/manpages/wordcount.1e
-debian/manpages/extractfeat.1e
-debian/manpages/pscan.1e
-debian/manpages/sirna.1e
-debian/manpages/trimseq.1e
-debian/manpages/sizeseq.1e
-debian/manpages/aligncopy.1e
-debian/manpages/origsplitter.1e
-debian/manpages/dbiflat.1e
-debian/manpages/infobase.1e
-debian/manpages/matcher.1e
-debian/manpages/prophecy.1e
-debian/manpages/demosequence.1e
-debian/manpages/whichdb.1e
+debian/manpages/geecee.1e
 debian/manpages/seqinfo.1e
-debian/manpages/complex.1e
-debian/manpages/stssearch.1e
-debian/manpages/extractalign.1e
-debian/manpages/pepwheel.1e
-debian/manpages/ajfeatest.1e
-debian/manpages/codcopy.1e
-debian/manpages/demostringnew.1e
-debian/manpages/pepcoil.1e
+debian/manpages/showdb.1e
+debian/manpages/ajtest.1e
 debian/manpages/seqretall.1e
-debian/manpages/octanol.1e
-debian/manpages/tranalign.1e
-debian/manpages/textsearch.1e
-debian/manpages/cpgplot.1e
-debian/manpages/maskseq.1e
-debian/manpages/notseq.1e
-debian/manpages/ajtest.1e
-debian/manpages/testplot.1e
-debian/manpages/restrict.1e
-debian/manpages/oddcomp.1e
-debian/manpages/pepwindow.1e
+debian/manpages/demolist.1e
+debian/manpages/jaspextract.1e
+debian/manpages/tcode.1e
+debian/manpages/seealso.1e
+debian/manpages/shuffleseq.1e
+debian/manpages/supermatcher.1e
+debian/manpages/dotpath.1e
+debian/manpages/marscan.1e
+debian/manpages/fuzznuc.1e
+debian/manpages/skipseq.1e
+debian/manpages/seqretsetall.1e
+debian/manpages/demostring.1e
+debian/manpages/notab.1e
+debian/manpages/newcpgreport.1e
+debian/manpages/cai.1e
 debian/manpages/restover.1e
-debian/manpages/cutseq.1e
-debian/manpages/extractseq.1e
-debian/manpages/checktrans.1e
-debian/manpages/garnier.1e
-debian/manpages/seqretset.1e
-debian/manpages/btwisted.1e
-debian/manpages/emma.1e
-debian/manpages/seqrettype.1e
-debian/manpages/showorf.1e
-debian/manpages/seqret.1e
-debian/manpages/tcode.1e
-debian/manpages/maskambigprot.1e
-debian/manpages/seqretsplit.1e
-debian/manpages/seqretsingle.1e
-debian/manpages/biosed.1e
-debian/manpages/acdc.1e
-debian/manpages/chips.1e
-debian/manpages/tfm.1e
-debian/manpages/dbiblast.1e
 debian/manpages/nthseq.1e
-debian/manpages/patmattest.1e
-debian/manpages/consambig.1e
-debian/manpages/tfextract.1e