[med-svn] r3565 - trunk/packages/velvet/trunk/debian

[Charles Plessy]

Author: plessy
Date: 2009-06-27 03:38:05 +0000 (Sat, 27 Jun 2009)
New Revision: 3565

Modified:
   trunk/packages/velvet/trunk/debian/changelog
   trunk/packages/velvet/trunk/debian/copyright
   trunk/packages/velvet/trunk/debian/rules
Log:
New upstream release.

   - Small formatting change to error messages
   - K > 31 now possible
   - --help option corrected for velvetg
   - Acceleration of k-mer operations (comparable to 64bit int performance)
   - Fixed variable lengths
   - Reordered struct declaration for more efficent memory alignment
 * debian/rules:
   - Restored manpage generation for velvetg*.
   - Added forgotten CFLAGS for the colorspace building.


Modified: trunk/packages/velvet/trunk/debian/changelog
===================================================================
--- trunk/packages/velvet/trunk/debian/changelog	2009-06-26 20:55:49 UTC (rev 3564)
+++ trunk/packages/velvet/trunk/debian/changelog	2009-06-27 03:38:05 UTC (rev 3565)
@@ -1,3 +1,18 @@
+velvet (0.7.37-1) unstable; urgency=low
+
+  * New upstream release. 
+    - Small formatting change to error messages
+    - K > 31 now possible
+    - --help option corrected for velvetg
+    - Acceleration of k-mer operations (comparable to 64bit int performance)
+    - Fixed variable lengths
+    - Reordered struct declaration for more efficent memory alignment
+  * debian/rules:
+    - Restored manpage generation for velvetg*.
+    - Added forgotten CFLAGS for the colorspace building.
+
+ -- Charles Plessy <plessy at debian.org>  Sat, 27 Jun 2009 12:27:27 +0900
+
 velvet (0.7.34-1) unstable; urgency=low
 
   * New upstream release correcting multiple bugs, changing the stats output,

Modified: trunk/packages/velvet/trunk/debian/copyright
===================================================================
--- trunk/packages/velvet/trunk/debian/copyright	2009-06-26 20:55:49 UTC (rev 3564)
+++ trunk/packages/velvet/trunk/debian/copyright	2009-06-27 03:38:05 UTC (rev 3565)
@@ -1,14 +1,13 @@
-Format: Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5/’.
+Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5/’.
+
 Name: Velvet
 Contact: Daniel Zerbino <zerbino at ebi.ac.uk>
-Source: http://www.ebi.ac.uk/~zerbino/velvet/velvet_0.7.34.tgz
+Source: http://www.ebi.ac.uk/~zerbino/velvet/velvet_0.7.37.tgz
 
 Copyright: © 2006-2009 Daniel Zerbino <zerbino at ebi.ac.uk>
            © 2000-2005 Guy St.C. Slater <guy at ebi.ac.uk>
            ©   2009    John Marshall (jm18 at sanger.ac.uk)
 License: GPL-2+
- This file is part of Velvet.
- .
  Velvet is free software; you can redistribute it and/or modify
  it under the terms of the GNU General Public License as published by
  the Free Software Foundation; either version 2 of the License, or
@@ -22,9 +21,10 @@
  You should have received a copy of the GNU General Public License
  along with Velvet; if not, write to the Free Software
  Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301  USA
-Comment: On Debian systems, the complete text of the GNU General Public
- License version 2 can be found in ‘/usr/share/common-licenses/GPL-2’.
 
+On Debian systems, the complete text of the GNU General Public
+License version 2 can be found in ‘/usr/share/common-licenses/GPL-2’.
+
 Files: velvet_0.7.34/src/fibpriv.h
  velvet_0.7.34/src/dfib.c
  velvet_0.7.34/src/fib.h
@@ -79,6 +79,7 @@
 License: GPL-2+
 
 Files: /third-party/z-lib-1.2.3
+Name: zlib
 Copyright: © 1995-1998 Jean-loup Gailly and Mark Adler
 License:
  This software is provided 'as-is', without any express or implied

Modified: trunk/packages/velvet/trunk/debian/rules
===================================================================
--- trunk/packages/velvet/trunk/debian/rules	2009-06-26 20:55:49 UTC (rev 3564)
+++ trunk/packages/velvet/trunk/debian/rules	2009-06-27 03:38:05 UTC (rev 3565)
@@ -11,15 +11,15 @@
 DEB_MAKE_BUILD_TARGET = obj velveth velvetg Z_LIB_FILES='' LDFLAGS='-lm -lz' OPT='' Z_LIB_INC='/usr/include'
 
 build/velvet::
-	make color Z_LIB_FILES='' LDFLAGS='-lm -lz' OPT='' Z_LIB_INC='/usr/include'
+	make color CFLAGS='$(CFLAGS)' Z_LIB_FILES='' LDFLAGS='-lm -lz' OPT='' Z_LIB_INC='/usr/include'
 	mkdir -p $(CURDIR)/debian/$(pkg)/usr/share/man/man1/
 	help2man --no-info --name="simple hashing program" \
 	         $(CURDIR)/velveth > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/velveth.1
 	help2man --no-info --name="simple hashing program (colorspace version)" \
 	         $(CURDIR)/velveth_de > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/velveth_de.1
-#	help2man --no-info --version-option=" " \
-#	         --name="de Bruijn graph construction, error removal and repeat resolution" \
-#	         $(CURDIR)/velvetg > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/velvetg.1
-#	help2man --no-info --version-option=" " \
-#	         --name="de Bruijn graph construction, error removal and repeat resolution (colorspace version)" \
-#	         $(CURDIR)/velvetg_de > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/velvetg_de.1
+	help2man --no-info --version-option=" " \
+	         --name="de Bruijn graph construction, error removal and repeat resolution" \
+	         $(CURDIR)/velvetg > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/velvetg.1
+	help2man --no-info --version-option=" " \
+	         --name="de Bruijn graph construction, error removal and repeat resolution (colorspace version)" \
+	         $(CURDIR)/velvetg_de > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/velvetg_de.1