[med-svn] r4200 - trunk/packages/perlprimer/trunk/debian

Charles Plessy plessy at alioth.debian.org
Mon Oct 12 07:50:41 UTC 2009 

Author: plessy
Date: 2009-10-12 07:50:41 +0000 (Mon, 12 Oct 2009)
New Revision: 4200

Added:
   trunk/packages/perlprimer/trunk/debian/upstream-metadata.yaml
Modified:
   trunk/packages/perlprimer/trunk/debian/changelog
   trunk/packages/perlprimer/trunk/debian/control
   trunk/packages/perlprimer/trunk/debian/copyright
Log:
New upstream release and minor packaging improvements.

   * Incremented Standards-Version to 3.8.3 to indicate conformance with the
     latest Policy (debian/control, no changes needed).
   * Added various informations in debian/upstream-metadata.yaml
   * Refreshed debian/copyright.


Modified: trunk/packages/perlprimer/trunk/debian/changelog
===================================================================
--- trunk/packages/perlprimer/trunk/debian/changelog	2009-10-10 03:44:51 UTC (rev 4199)
+++ trunk/packages/perlprimer/trunk/debian/changelog	2009-10-12 07:50:41 UTC (rev 4200)
@@ -1,3 +1,15 @@
+perlprimer (1.1.18-1) unstable; urgency=low
+
+  * New upstream release:
+    - Ensembl compatibility once again restored.
+    - Many new Ensembl genome species added.
+  * Incremented Standards-Version to 3.8.3 to indicate conformance with the
+    latest Policy (debian/control, no changes needed).
+  * Added various informations in debian/upstream-metadata.yaml
+  * Refreshed debian/copyright.
+
+ -- Charles Plessy <plessy at debian.org>  Mon, 12 Oct 2009 16:38:24 +0900
+
 perlprimer (1.1.17-1) unstable; urgency=low
 
   * New upstream release: Ensembl compatibility restored for genomic sequence

Modified: trunk/packages/perlprimer/trunk/debian/control
===================================================================
--- trunk/packages/perlprimer/trunk/debian/control	2009-10-10 03:44:51 UTC (rev 4199)
+++ trunk/packages/perlprimer/trunk/debian/control	2009-10-12 07:50:41 UTC (rev 4200)
@@ -7,7 +7,7 @@
  Charles Plessy <plessy at debian.org>,
  Andreas Tille <tille at debian.org>
 Build-Depends: debhelper (>= 7), quilt, cdbs
-Standards-Version: 3.8.1
+Standards-Version: 3.8.3
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/perlprimer/trunk/?rev=0&sc=0
 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/perlprimer/trunk/
 Homepage: http://perlprimer.sourceforge.net

Modified: trunk/packages/perlprimer/trunk/debian/copyright
===================================================================
--- trunk/packages/perlprimer/trunk/debian/copyright	2009-10-10 03:44:51 UTC (rev 4199)
+++ trunk/packages/perlprimer/trunk/debian/copyright	2009-10-12 07:50:41 UTC (rev 4200)
@@ -1,35 +1,36 @@
-Format: http://svn.debian.org/wsvn/dep/web/deps/dep5.mdwn?op=file&rev=35&sc=0
-Name: PerlPrimer
-Maintainer: Owen Marshall <owenjm at users.sourceforge.net>
-Source: http://downloads.sourceforge.net/perlprimer/perlprimer-1.1.17.tar.bz2
+Name       :  PerlPrimer
+Maintainer :  Owen Marshall <owenjm at users.sourceforge.net>
+Source     :  http://jaist.dl.sourceforge.net/project/perlprimer/PerlPrimer/1.1.18/perlprimer-1.1.18.tar.bz2
 
 Copyright: © 2003-2009 Owen Marshall <owenjm at users.sourceforge.net>
 License: GPL-2+
+    
     This program is free software; you can redistribute it and/or modify
     it under the terms of the GNU General Public License as published by
     the Free Software Foundation; either version 2 of the License, or
     (at your option) any later version.
- .
+    
     This program is distributed in the hope that it will be useful,
     but WITHOUT ANY WARRANTY; without even the implied warranty of
     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
     GNU General Public License for more details.
- .
+    
     You should have received a copy of the GNU General Public License along
     with this program; if not, write to the Free Software Foundation, Inc.,
     51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
-X-Comment: On Debian systems, the complete text of the GNU General Public
- License version 2 can be found in `/usr/share/common-licenses/GPL-2'.
 
+On Debian systems, the complete text of the GNU General Public License version
+2 can be found in ‘/usr/share/common-licenses/GPL-2’.
+
 Files: gcg.603
 Copyright: © 2006 Dr. Richard J. Roberts
 License:
  This file is from REBASE version 603.
- .
+ 
  REBASE, the Restriction Enzyme Database
  Dr. R.J. Roberts and D. Macelis
  rebase.neb.com
- .
+ 
  "REBASE is free to its users and they may use the data however they'd like,
  but when this use involves repackaging the data and redistribututing it, the
  common courtesy we always provide one another is to credit the source of this

Added: trunk/packages/perlprimer/trunk/debian/upstream-metadata.yaml
===================================================================
--- trunk/packages/perlprimer/trunk/debian/upstream-metadata.yaml	                        (rev 0)
+++ trunk/packages/perlprimer/trunk/debian/upstream-metadata.yaml	2009-10-12 07:50:41 UTC (rev 4200)
@@ -0,0 +1,17 @@
+Contact: http://perlprimer.sourceforge.net/contact.html
+DOI: 10.1093/bioinformatics/bth254
+Homepage: http://perlprimer.sourceforge.net
+PubMed: 15073005
+Reference: |
+ @article{OwenJ. Marshall10122004,
+ author = {Marshall, Owen J.},
+ title = {{PerlPrimer: cross-platform, graphical primer design for standard, bisulphite and real-time PCR}},
+ journal = {Bioinformatics},
+ volume = {20},
+ number = {15},
+ pages = {2471-2472},
+ doi = {10.1093/bioinformatics/bth254},
+ year = {2004},
+ URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/20/15/2471},
+ eprint = {http://bioinformatics.oxfordjournals.org/cgi/reprint/20/15/2471.pdf}
+ }

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