[med-svn] r4228 - trunk/packages/clustalx/trunk/debian
Charles Plessy
plessy at alioth.debian.org
Wed Oct 21 04:46:52 UTC 2009
Author: plessy
Date: 2009-10-21 04:46:52 +0000 (Wed, 21 Oct 2009)
New Revision: 4228
Modified:
trunk/packages/clustalx/trunk/debian/changelog
trunk/packages/clustalx/trunk/debian/clustalx.1
trunk/packages/clustalx/trunk/debian/control
trunk/packages/clustalx/trunk/debian/copyright
Log:
Polished packaging and uploaded.
Modified: trunk/packages/clustalx/trunk/debian/changelog
===================================================================
--- trunk/packages/clustalx/trunk/debian/changelog 2009-10-20 20:38:38 UTC (rev 4227)
+++ trunk/packages/clustalx/trunk/debian/changelog 2009-10-21 04:46:52 UTC (rev 4228)
@@ -1,8 +1,5 @@
-clustalx (2.0.12-1) UNRELEASED; urgency=low
+clustalx (2.0.12-1) unstable; urgency=low
- TODO: update manpage, check copyright file and Policy.
- Misc stuff found by Lintian
-
* New upstream release (LP: #423648, #393769):
- Uses Qt instead of lesstif.
- Includes new code for UPGMA guide trees.
@@ -30,8 +27,11 @@
is in /usr/share/doc/quilt.
* Added upstream changelog downloaded from upstream website
(debian/rules, debian/CHANGELOG.upstream).
+ * Incremented Standards-Version to reflect conformance with Policy 3.8.3
+ (debian/control, no other changes needed).
+ * Updated homepage in debian/clustalw.1.
- -- Charles Plessy <plessy at debian.org> Mon, 19 Oct 2009 13:19:51 +0900
+ -- Charles Plessy <plessy at debian.org> Wed, 21 Oct 2009 13:25:44 +0900
clustalx (1.83-4) unstable; urgency=low
Modified: trunk/packages/clustalx/trunk/debian/clustalx.1
===================================================================
--- trunk/packages/clustalx/trunk/debian/clustalx.1 2009-10-20 20:38:38 UTC (rev 4227)
+++ trunk/packages/clustalx/trunk/debian/clustalx.1 2009-10-21 04:46:52 UTC (rev 4228)
@@ -31,7 +31,7 @@
.SH "SEE ALSO"
Files in /usr/share/doc/clustalx contain a lot
-of details. The Web page <http://www-igbmc.u-strasbg.fr/BioInfo/ClustalW/>
+of details. The Web page <http://www.clustal.org/>
is also helpful.
.SH AUTHOR
This manual page was written by Andreas Tille <tille at debian.org>,
Modified: trunk/packages/clustalx/trunk/debian/control
===================================================================
--- trunk/packages/clustalx/trunk/debian/control 2009-10-20 20:38:38 UTC (rev 4227)
+++ trunk/packages/clustalx/trunk/debian/control 2009-10-21 04:46:52 UTC (rev 4228)
@@ -4,8 +4,8 @@
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
DM-Upload-Allowed: yes
Uploaders: Steffen Moeller <moeller at debian.org>, Charles Plessy <plessy at debian.org>
-Build-Depends: debhelper (>= 7), libqt4-dev, quilt
-Standards-Version: 3.7.3
+Build-Depends: debhelper (>= 7.0.50~), libqt4-dev, quilt
+Standards-Version: 3.8.3
Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/clustalx/trunk/?rev=0&sc=0
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/clustalx/trunk/
XS-Autobuild: yes
Modified: trunk/packages/clustalx/trunk/debian/copyright
===================================================================
--- trunk/packages/clustalx/trunk/debian/copyright 2009-10-20 20:38:38 UTC (rev 4227)
+++ trunk/packages/clustalx/trunk/debian/copyright 2009-10-21 04:46:52 UTC (rev 4228)
@@ -1,75 +1,90 @@
-X-Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat
-X-Debianized-By: Stephane Bortzmeyer <bortzmeyer at debian.org>
-X-Debianized-Date: Fri, 28 Aug 1998 16:09:48 +0200
-X-Source-Downloaded-From: http://www.clustal.org/download/current/clustalx-2.0.12.tar.gz
-X-Upstream-Author: Des Higgins, Julie Thompson and Toby Gibson
+Name : Clustal X
+Contact : clustalw at ucd.ie
+Source : http://www.clustal.org/download/current/clustalx-2.0.12.tar.gz
-Files: debian/*
-Copyright: © 1998-1999 Stephane Bortzmeyer <bortzmeyer at debian.org>
- © 2001 Dr. Guenter Bechly <gbechly at debian.org>
- © 2001 Adrian Bunk <bunk at fs.tum.de>
- © 2001-2002 Andreas Tille <tille at debian.org>
- © 2003-2008 Steffen Möller <moeller at debian.org>
- © 2006 Kai Hendry <hendry at iki.fi>
- © 2007 Nelson A. de Oliveira <naoliv at debian.org>
- © 2007-2008 Charles Plessy <charles-debian-nospam at plessy.org>
-Licence: Unclear
- The licence of the earlier works was never stated. Some works have been
- obsoleted by release of version 2.0 — the lesstif migration for instance —
- but authors are left in the list of copyright holders by courtesy. The work
- of Charles Plessy and Steffen Möller can be treated as if it were public domain.
+Disclamer :
+ This package is not part of the Debian operating system. The clustalx source
+ and binary Debian packages are part of the “non-free” area in our archive. The
+ packages in this area are not part of the Debian system, although they have
+ been configured for use with Debian. We nevertheless support the use of the
+ clustalx source and binary Debian packages and provide infrastructure for
+ non-free packages (such as our bug tracking system and mailing lists). The
+ licence does not forbid Debian from using autobuilders to create binary
+ packages.
-Files: debian/clustalx.1
-Copyright: © 1998-1999 Stephane Bortzmeyer <bortzmeyer at debian.org>
-Licence: Unknown
-Files: *
Copyright: © Des Higgins, Julie Thompson and Toby Gibson
-Licence: Not for commercial use, No modification of the code.
- Licensing ClustalW and ClustalX
- .
- Date:29 November 2007
- .
- The copyright for ClustalW and ClustalX is held by Des Higgins, Julie Thompson
- and Toby Gibson
- .
- The binaries and source code are made available and can be distributed subject
- to the following conditions:
- .
- Users are free to redistribute ClustalW or ClustalX in it's unmodified form as
- long as it is not for commercial gain.
- .
- Anyone wishing to redistribute Clustal commercially should contact Toby Gibson
- at gibson at embl.de
- .
- .
- If users make changes/have ideas that they believe would be useful to the
- broader research community they can send their suggestions to the clustal
- development team at clustalw at ucd.ie where they will be considered for inclusion
- in future releases.
+Licence:
+
+ Date:29 November 2007
+
+ The copyright for ClustalW and ClustalX is held by Des Higgins, Julie Thompson
+ and Toby Gibson
+
+ The binaries and source code are made available and can be distributed subject
+ to the following conditions:
+
+ Users are free to redistribute ClustalW or ClustalX in it's unmodified form as
+ long as it is not for commercial gain.
+
+ Anyone wishing to redistribute Clustal commercially should contact Toby Gibson
+ at gibson at embl.de
+
+
+ If users make changes/have ideas that they believe would be useful to the
+ broader research community they can send their suggestions to the clustal
+ development team at clustalw at ucd.ie where they will be considered for inclusion
+ in future releases.
-X-Comment: Frequently asked questions about Clustal licensing?
- ---------------------------------------------------
- .
+Comment:
+
+ Frequently asked questions about Clustal licensing?
+ ---------------------------------------------------
+
1. Do I have to pay to use ClustalW or ClustalX?
No - unless you wish to redistribute Clustal for profit. In this case see question 4.
- .
+
2. Can I redistribute the Clustal binaries and source code?
Yes. We have always wanted to see Clustal have as wide a userbase and
distribution network as possible and are happy to see other sites host copies
of the official Clustal code.
- .
+
3. Can I make changes to the source code?
- .
+
You can make changes for your own purposes but you should not redistribute the
changed code.
- .
+
4. I want to include ClustalW/ClustalX in a commercial application who should I contact?
Toby Gibson at gibson at embl.de (also cc des.higgins at ucd.ie)
- .
+
5. There is no Clustal distribution for platform X. I have changed the code in
order to compile Clustal on this platform. Can I redistribute it?
- .
+
Ideally you should send us a copy of your source code changes as well as a
binary. We will include it in our contributed binaries section on our FTP site
along with an acknowledgement of your contribution.
+
+
+Comment: I have received the following message from Des Higgins. -- Charles Plessy
+
+ "We are happy to give the Debian team permission to modify
+ ClustalW 2 and ClustalX 2 code and redistribute the binaries as long as
+ those modifications do not alter the algorithmic core, i.e. only affect
+ installation routines, bug fixes etc. Please include the original
+ LICENSE file into your package."
+
+
+Files: debian/*
+Copyright: © 1998-1999 Stephane Bortzmeyer <bortzmeyer at debian.org>
+ © 2001 Dr. Guenter Bechly <gbechly at debian.org>
+ © 2001 Adrian Bunk <bunk at fs.tum.de>
+ © 2001-2002 Andreas Tille <tille at debian.org>
+ © 2003-2008 Steffen Möller <moeller at debian.org>
+ © 2006 Kai Hendry <hendry at iki.fi>
+ © 2007 Nelson A. de Oliveira <naoliv at debian.org>
+ © 2007–2009 Charles Plessy <charles-debian-nospam at plessy.org>
+Licence: Unclear
+ The licence of the earlier works was never stated. Some works have been
+ obsoleted by release of version 2.0 — the lesstif migration for instance —
+ but authors are left in the list of copyright holders by courtesy. The work
+ of Charles Plessy and Steffen Möller can be treated as if it were public domain.
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