[med-svn] r4901 - trunk/packages/last-align/trunk/debian

[Andreas Tille]

Author: tille
Date: 2010-06-24 10:06:18 +0000 (Thu, 24 Jun 2010)
New Revision: 4901

Added:
   trunk/packages/last-align/trunk/debian/last-align.doc-base.last-align-lastex
Removed:
   trunk/packages/last-align/trunk/debian/last-align.doc-base.last-align-evalues
Modified:
   trunk/packages/last-align/trunk/debian/changelog
   trunk/packages/last-align/trunk/debian/rules
Log:
Adapted doc-base to upstream documents, help2man created manpage for maf-convert, final upload of new upstream version


Modified: trunk/packages/last-align/trunk/debian/changelog
===================================================================
--- trunk/packages/last-align/trunk/debian/changelog	2010-06-22 08:45:00 UTC (rev 4900)
+++ trunk/packages/last-align/trunk/debian/changelog	2010-06-24 10:06:18 UTC (rev 4901)
@@ -1,5 +1,6 @@
-last-align (119-1) UNRELEASED; urgency=low
+last-align (119-1) unstable; urgency=low
 
+  [ Charles Plessy ]
   * New upstream version.
   * debian/rules get-orig-source:
   * Pass --best and --no-name to gzip, for reproductible MD5 sums.
@@ -8,10 +9,16 @@
   * Build-depend on help2man (>= 1.36.4+nmu1), since the option
     --version-string is not available earlier.
   * Added missing empty line in debian/NEWS.
-  * Gathered informations about upstream in debian/upstream-metadata.yaml.
+  * Gathered information about upstream in debian/upstream-metadata.yaml.
 
- -- Charles Plessy <plessy at debian.org>  Sun, 23 May 2010 19:17:56 +0900
+  [ Andreas Tille ]
+  * debian/last-align.doc-base.last-align-lastex:
+    Upstream documentation evalue-tables.txt was replaced by lastex.txt
+  * debain/rules:
+    Added help2man call for maf-convert
 
+ -- Andreas Tille <tille at debian.org>  Thu, 24 Jun 2010 11:41:46 +0200
+
 last-align (102-1) unstable; urgency=low
 
   * New upstream version

Deleted: trunk/packages/last-align/trunk/debian/last-align.doc-base.last-align-evalues
===================================================================
--- trunk/packages/last-align/trunk/debian/last-align.doc-base.last-align-evalues	2010-06-22 08:45:00 UTC (rev 4900)
+++ trunk/packages/last-align/trunk/debian/last-align.doc-base.last-align-evalues	2010-06-24 10:06:18 UTC (rev 4901)
@@ -1,9 +0,0 @@
-Document: last-align-evalues
-Title: LAST manual: e-values
-Author: Martin C. Frith and Paul B. Horton
-Abstract: The following tables indicate how many high-scoring alignments are
- expected, on average, between a pair of completely random sequences.
-Section: Science/Biology
-
-Format: text
-Files: /usr/share/doc/last-align/evalue-tables.txt.gz

Added: trunk/packages/last-align/trunk/debian/last-align.doc-base.last-align-lastex
===================================================================
--- trunk/packages/last-align/trunk/debian/last-align.doc-base.last-align-lastex	                        (rev 0)
+++ trunk/packages/last-align/trunk/debian/last-align.doc-base.last-align-lastex	2010-06-24 10:06:18 UTC (rev 4901)
@@ -0,0 +1,11 @@
+Document: last-align-lastex
+Title: LAST manual: expected numbers of alignments for random sequences
+Author: Martin C. Frith and Paul B. Horton
+Abstract: If we compare two completely random sequences, we may find weak
+ similarities that exist by chance.  It is useful to know the
+ likelihood of getting chance alignments, to help us judge whether
+ alignments of real sequences are significant or not.
+Section: Science/Biology
+
+Format: text
+Files: /usr/share/doc/last-align/lastex.txt.gz

Modified: trunk/packages/last-align/trunk/debian/rules
===================================================================
--- trunk/packages/last-align/trunk/debian/rules	2010-06-22 08:45:00 UTC (rev 4900)
+++ trunk/packages/last-align/trunk/debian/rules	2010-06-24 10:06:18 UTC (rev 4901)
@@ -57,6 +57,9 @@
 	help2man --no-info --version-string="$(version)" \
                  --name="Join two or more sets of MAF-format multiple alignments" \
                  $(CURDIR)/scripts/maf-join.py > $(mandir)/maf-join.1
+	help2man --no-info --version-string="$(version)" \
+                 --name="Convert MAF-format alignments to tabular format" \
+                 $(CURDIR)/scripts/maf-convert.py > $(mandir)/maf-convert.1
 
 # The unzip command from the unzip package is needed for this one.
 # Please update debian/changelog before calling this target.