[med-svn] r4843 - in trunk/packages/libbio-mage-utils-perl/trunk/debian: . patches
Charles Plessy
plessy at alioth.debian.org
Wed May 26 12:15:52 UTC 2010
Author: plessy
Date: 2010-05-26 12:15:43 +0000 (Wed, 26 May 2010)
New Revision: 4843
Added:
trunk/packages/libbio-mage-utils-perl/trunk/debian/README.source
Modified:
trunk/packages/libbio-mage-utils-perl/trunk/debian/README.Debian
trunk/packages/libbio-mage-utils-perl/trunk/debian/changelog
trunk/packages/libbio-mage-utils-perl/trunk/debian/compat
trunk/packages/libbio-mage-utils-perl/trunk/debian/control
trunk/packages/libbio-mage-utils-perl/trunk/debian/copyright
trunk/packages/libbio-mage-utils-perl/trunk/debian/patches/move-MAGE-root.patch
Log:
Uploaded after forgotting this package for two years.
Modified: trunk/packages/libbio-mage-utils-perl/trunk/debian/README.Debian
===================================================================
--- trunk/packages/libbio-mage-utils-perl/trunk/debian/README.Debian 2010-05-26 11:38:42 UTC (rev 4842)
+++ trunk/packages/libbio-mage-utils-perl/trunk/debian/README.Debian 2010-05-26 12:15:43 UTC (rev 4843)
@@ -1,8 +1,7 @@
libbio-mage-utils-perl for Debian
---------------------------------
-WORK IN PROGRESS
+Modules are moved from Bio::MAGE::Utils to Bio::MAGE in order to make them
+functional on a default Debian installation.
-<possible notes regarding this package - if none, delete this file>
-
- -- Charles Plessy <charles-debian-nospam at plessy.org> Fri, 11 Apr 2008 11:43:26 +0900
+ -- Charles Plessy <plessy at debian.org> Wed, 26 May 2010 20:54:49 +0900
Added: trunk/packages/libbio-mage-utils-perl/trunk/debian/README.source
===================================================================
--- trunk/packages/libbio-mage-utils-perl/trunk/debian/README.source (rev 0)
+++ trunk/packages/libbio-mage-utils-perl/trunk/debian/README.source 2010-05-26 12:15:43 UTC (rev 4843)
@@ -0,0 +1,3 @@
+This package uses the ‘simple-patchsys’ patch system. Please refer to
+file:///usr/share/doc/cdbs/ or http://wiki.debian.org/debian/patches for more
+instructions.
Modified: trunk/packages/libbio-mage-utils-perl/trunk/debian/changelog
===================================================================
--- trunk/packages/libbio-mage-utils-perl/trunk/debian/changelog 2010-05-26 11:38:42 UTC (rev 4842)
+++ trunk/packages/libbio-mage-utils-perl/trunk/debian/changelog 2010-05-26 12:15:43 UTC (rev 4843)
@@ -1,6 +1,5 @@
-libbio-mage-utils-perl (20030502.0-1) UNRELEASED; urgency=low
+libbio-mage-utils-perl (20030502.0-1) unstable; urgency=low
* Initial release (Closes: #476202)
- -- Charles Plessy <plessy at debian.org> Sun, 27 Apr 2008 16:56:06 +0900
-
+ -- Charles Plessy <plessy at debian.org> Wed, 26 May 2010 20:40:26 +0900
Modified: trunk/packages/libbio-mage-utils-perl/trunk/debian/compat
===================================================================
--- trunk/packages/libbio-mage-utils-perl/trunk/debian/compat 2010-05-26 11:38:42 UTC (rev 4842)
+++ trunk/packages/libbio-mage-utils-perl/trunk/debian/compat 2010-05-26 12:15:43 UTC (rev 4843)
@@ -1 +1 @@
-5
+7
Modified: trunk/packages/libbio-mage-utils-perl/trunk/debian/control
===================================================================
--- trunk/packages/libbio-mage-utils-perl/trunk/debian/control 2010-05-26 11:38:42 UTC (rev 4842)
+++ trunk/packages/libbio-mage-utils-perl/trunk/debian/control 2010-05-26 12:15:43 UTC (rev 4843)
@@ -4,8 +4,8 @@
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
DM-Upload-Allowed: yes
Uploaders: Charles Plessy <plessy at debian.org>
-Build-Depends: cdbs, quilt, debhelper (>= 5)
-Standards-Version: 3.7.3
+Build-Depends: cdbs, quilt, debhelper (>= 7)
+Standards-Version: 3.8.4
Homepage: http://mged.sourceforge.net/
Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/libbio-mage-utils-perl/trunk/?rev=0&sc=0
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/libbio-mage-utils-perl/trunk/
Modified: trunk/packages/libbio-mage-utils-perl/trunk/debian/copyright
===================================================================
--- trunk/packages/libbio-mage-utils-perl/trunk/debian/copyright 2010-05-26 11:38:42 UTC (rev 4842)
+++ trunk/packages/libbio-mage-utils-perl/trunk/debian/copyright 2010-05-26 12:15:43 UTC (rev 4843)
@@ -1,38 +1,63 @@
-X-Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat
-X-Debianized-By: Charles Plessy <charles-debian-nospam at plessy.org>
-X-Debianized-Date: Fri, 11 Apr 2008 11:43:26 +0900
-X-Source-Downloaded-From: http://downloads.sourceforge.net/mged/Bio-MAGE-Utils-20030502.0.tar.gz
-Upstream Author: The MAGE-Perl Hackers <mged-mage-perl 'at' lists 'dot' sf 'dot' net>
+Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5/’.
-Files: debian/*
-Copyright: © 2008 Charles Plessy <charles-debian-nospam at plessy.org>
-License: Same as Bio-MAGE-Utils itself.
+Name: Bio-MAGE-Utils
+Source: http://downloads.sourceforge.net/mged/Bio-MAGE-Utils-20030502.0.tar.gz
+Contact: The MAGE-Perl Hackers <mged-mage-perl 'at' lists 'dot' sf 'dot' net>
-Files: MAGE/Tools/*
+
Copyright: © 2001-2002 The MicroArray Gene Expression Database Society (MGED)
© 2001-2002 Rosetta Inpharmatics
-License: MIT/X11
- Permission is hereby granted, free of charge, to any person
- obtaining a copy of this software and associated documentation files
- (the "Software"), to deal in the Software without restriction,
- including without limitation the rights to use, copy, modify, merge,
- publish, distribute, sublicense, and/or sell copies of the Software,
- and to permit persons to whom the Software is furnished to do so,
- subject to the following conditions:
- .
- The above copyright notice and this permission notice shall be
- included in all copies or substantial portions of the Software.
- .
- THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
- EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
- MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
- NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS
- BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN
- ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
- CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
- SOFTWARE.
+License: MIT/X11
-Files: *
-Copyright: ©
-License: MIT/X11
- (probably)
+ Permission is hereby granted, free of charge, to any person
+ obtaining a copy of this software and associated documentation files
+ (the "Software"), to deal in the Software without restriction,
+ including without limitation the rights to use, copy, modify, merge,
+ publish, distribute, sublicense, and/or sell copies of the Software,
+ and to permit persons to whom the Software is furnished to do so,
+ subject to the following conditions:
+
+ The above copyright notice and this permission notice shall be
+ included in all copies or substantial portions of the Software.
+
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+ EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+ MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
+ NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS
+ BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN
+ ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN
+ CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+ SOFTWARE.
+
+Upstream author Jason Stewart confirmed me that the files with no license
+statements have the same license as Bio::MAGE, MIT/X11.
+-- Charles Plessy
+
+
+Files: MAGE/XML/Handler/ObjectHandler/SQL.pm
+ MAGE/XML/Handler/ObjectHandlerI.pm
+Copyright: © 2003 Allen Day <allenday at ucla.edu>
+License: Perl
+
+ You may distribute this module under the same terms as perl itself
+
+
+License: Perl
+
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of either:
+
+ a) the GNU General Public License as published by the Free Software
+ Foundation; either version 1, or (at your option) any later
+ version, or
+
+ b) the "Artistic License" which comes with Perl.
+
+On Debian GNU/Linux systems, the complete text of the latest version of the GNU
+General Public License can be found in ‘/usr/share/common-licenses/GPL’ and the
+Artistic Licence in ‘/usr/share/common-licenses/Artistic’.
+
+
+Files: debian/*
+Copyright: © 2008–10 Charles Plessy <plessy at debian.org>
+License: Same as Bio-MAGE-Utils
Modified: trunk/packages/libbio-mage-utils-perl/trunk/debian/patches/move-MAGE-root.patch
===================================================================
--- trunk/packages/libbio-mage-utils-perl/trunk/debian/patches/move-MAGE-root.patch 2010-05-26 11:38:42 UTC (rev 4842)
+++ trunk/packages/libbio-mage-utils-perl/trunk/debian/patches/move-MAGE-root.patch 2010-05-26 12:15:43 UTC (rev 4843)
@@ -1,5 +1,8 @@
-This patch is necessary for the installation process to complete
-and for third-party applications to function.
+Description: Move from Bio::MAGE::Utils to Bio::MAGE.
+ This patch is necessary for the installation process to complete
+ and for third-party applications to function.
+Author: Charles Plessy <plessy at debian.org>
+Forwarded: mged-mage-perl at lists.sourceforge.net
--- a/Makefile.PL
+++ b/Makefile.PL
@@ -2,7 +2,7 @@
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