[med-svn] r6538 - trunk/packages/gbrowse/trunk/debian
Charles Plessy
plessy at debian.org
Wed Apr 13 06:30:54 UTC 2011
Le Wed, Apr 13, 2011 at 06:27:46AM +0000, Charles Plessy a écrit :
> Author: plessy
> Date: 2011-04-13 06:27:42 +0000 (Wed, 13 Apr 2011)
> New Revision: 6538
>
> Modified:
> trunk/packages/gbrowse/trunk/debian/changelog
> Log:
> Uploaded gbrowse_2.26~dfsg-1_amd64.changes.
And here is the build log.
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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sbuild (Debian sbuild) 0.62.2 (05 Apr 2011) on anx191
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? gbrowse 2.26~dfsg-1 (amd64) 13 Apr 2011 15:20 ?
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Package: gbrowse
Version: 2.26~dfsg-1
Source Version: 2.26~dfsg-1
Distribution: unstable
Architecture: amd64
I: NOTICE: Log filtering will replace 'build/gbrowse-amqguV' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-2469bbf1-b207-4013-93e3-eda18704602a' with '«CHROOT»'
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? Update chroot ?
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Hit http://ftp.riken.jp sid InRelease
Hit http://ftp.riken.jp sid/main Sources/DiffIndex
Hit http://ftp.riken.jp sid/main amd64 Packages/DiffIndex
Hit http://ftp.riken.jp sid/main TranslationIndex
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
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? Fetch source files ?
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Local sources
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gbrowse_2.26~dfsg-1.dsc exists in .; copying to chroot
Check arch
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-o3qL7i/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
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? Install core build dependencies (apt-based resolver) ?
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Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/706 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously deselected package sbuild-build-depends-core-dummy.
(Reading database ... 10291 files and directories currently installed.)
Unpacking sbuild-build-depends-core-dummy (from .../sbuild-build-depends-core-dummy.deb) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), bioperl (>= 1.5.9), debhelper (>= 8), libbio-graphics-perl (>= 2.09), libcapture-tiny-perl, libcgi-session-perl (>= 4.02), libgd-gd2-perl (>= 2.07) | libgd-gd2-noxpm-perl (>= 2.07), libio-string-perl, libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, perl, perl (>= 5.10.0) | libextutils-cbuilder-perl, sqlite3, libdbd-sqlite3-perl, libterm-readkey-perl, libjs-prototype (>= 1.7), libjs-scriptaculous (>= 1.9)
Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), bioperl (>= 1.5.9), debhelper (>= 8), libbio-graphics-perl (>= 2.09), libcapture-tiny-perl, libcgi-session-perl (>= 4.02), libgd-gd2-perl (>= 2.07), libio-string-perl, libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, perl, perl (>= 5.10.0), sqlite3, libdbd-sqlite3-perl, libterm-readkey-perl, libjs-prototype (>= 1.7), libjs-scriptaculous (>= 1.9)
dpkg-deb: building package `sbuild-build-depends-gbrowse-dummy' in `/«BUILDDIR»/resolver-PRdQuu/apt_archive/sbuild-build-depends-gbrowse-dummy.deb'.
OK
Reading package lists...
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? Install gbrowse build dependencies (apt-based resolver) ?
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Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
bioperl bsdmainutils ca-certificates debhelper file fontconfig-config
gettext gettext-base groff-base html2text intltool-debian
libbio-graphics-perl libcapture-tiny-perl libcgi-session-perl libcroco3
libdata-stag-perl libdbd-sqlite3-perl libdbi-perl libencode-locale-perl
libexpat1 libfile-listing-perl libfontconfig1 libfreetype6 libgd-gd2-perl
libgd2-xpm libglib2.0-0 libhtml-parser-perl libhtml-tagset-perl
libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl
libhttp-message-perl libhttp-negotiate-perl libio-string-perl libjpeg62
libjs-prototype libjs-scriptaculous libjson-perl liblwp-mediatypes-perl
libmagic1 libnet-daemon-perl libnet-http-perl libpcre3 libpipeline1
libplrpc-perl libpng12-0 libsqlite3-0 libssl1.0.0
libstatistics-descriptive-perl libterm-readkey-perl libunistring0
liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6
libxcb1 libxdmcp6 libxml2 libxpm4 man-db netbase openssl po-debconf sqlite3
ttf-dejavu-core ucf
Suggested packages:
libmath-random-perl libxml-sax-expatxs-perl wamerican wordlist whois
vacation dh-make gettext-doc groff libgd-tools libdata-dump-perl
libjson-pp-perl libcrypt-ssleay-perl libio-socket-ssl-perl less www-browser
libmail-box-perl sqlite3-doc
Recommended packages:
bioperl-run libace-perl libalgorithm-munkres-perl libarray-compare-perl
libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl
libdbd-mysql-perl libdbd-pg-perl libgraph-perl libgraphviz-perl
liblist-moreutils-perl libpostscript-perl libset-scalar-perl
libsoap-lite-perl libspreadsheet-parseexcel-perl
libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl
libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl
libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl
libxml-writer-perl libxml-libxml-perl curl wget lynx-cur autopoint
libbio-scf-perl libgd-svg-perl perl-tk libxml-libxslt-perl libmldbm-perl
libglib2.0-data shared-mime-info javascript-common libjson-xs-perl
libhtml-form-perl libhtml-format-perl libmailtools-perl xml-core ifupdown
libmail-sendmail-perl
The following NEW packages will be installed:
bioperl bsdmainutils ca-certificates debhelper file fontconfig-config
gettext gettext-base groff-base html2text intltool-debian
libbio-graphics-perl libcapture-tiny-perl libcgi-session-perl libcroco3
libdata-stag-perl libdbd-sqlite3-perl libdbi-perl libencode-locale-perl
libexpat1 libfile-listing-perl libfontconfig1 libfreetype6 libgd-gd2-perl
libgd2-xpm libglib2.0-0 libhtml-parser-perl libhtml-tagset-perl
libhtml-tree-perl libhttp-cookies-perl libhttp-daemon-perl libhttp-date-perl
libhttp-message-perl libhttp-negotiate-perl libio-string-perl libjpeg62
libjs-prototype libjs-scriptaculous libjson-perl liblwp-mediatypes-perl
libmagic1 libnet-daemon-perl libnet-http-perl libpcre3 libpipeline1
libplrpc-perl libpng12-0 libsqlite3-0 libssl1.0.0
libstatistics-descriptive-perl libterm-readkey-perl libunistring0
liburi-perl libwww-perl libwww-robotrules-perl libx11-6 libx11-data libxau6
libxcb1 libxdmcp6 libxml2 libxpm4 man-db netbase openssl po-debconf
sbuild-build-depends-gbrowse-dummy sqlite3 ttf-dejavu-core ucf
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 70 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/26.3 MB of archives.
After this operation, 75.2 MB of additional disk space will be used.
Selecting previously deselected package bsdmainutils.
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Unpacking libhtml-tagset-perl (from .../libhtml-tagset-perl_3.20-2_all.deb) ...
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Selecting previously deselected package sbuild-build-depends-gbrowse-dummy.
Unpacking sbuild-build-depends-gbrowse-dummy (from .../sbuild-build-depends-gbrowse-dummy.deb) ...
Setting up bsdmainutils (8.2.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode.
Setting up groff-base (1.21-5) ...
Setting up libpipeline1 (1.2.0-1) ...
Setting up libssl1.0.0 (1.0.0d-1) ...
Setting up man-db (2.6.0.1-1) ...
Building database of manual pages ...
Setting up netbase (4.45) ...
Configuration file `/etc/services'
==> File on system created by you or by a script.
==> File also in package provided by package maintainer.
==> Using current old file as you requested.
Configuration file `/etc/protocols'
==> File on system created by you or by a script.
==> File also in package provided by package maintainer.
==> Using current old file as you requested.
Setting up libmagic1 (5.04-5) ...
Setting up file (5.04-5) ...
Setting up gettext-base (0.18.1.1-3) ...
Setting up libpcre3 (8.12-3) ...
Setting up libsqlite3-0 (3.7.5-1) ...
Setting up libxml2 (2.7.8.dfsg-2) ...
Setting up ucf (3.0025+nmu1) ...
Setting up libio-string-perl (1.08-2) ...
Setting up libdata-stag-perl (0.11-2) ...
Setting up bioperl (1.6.1-2) ...
Setting up openssl (1.0.0d-1) ...
Setting up ca-certificates (20090814+nmu3) ...
Updating certificates in /etc/ssl/certs... WARNING: Skipping duplicate certificate brasil.gov.br.pem
141 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d....done.
Setting up html2text (1.3.2a-15) ...
Setting up libglib2.0-0 (2.28.4-1) ...
No schema files found: doing nothing.
Setting up libcroco3 (0.6.2-1) ...
Setting up libunistring0 (0.9.3-3) ...
Setting up gettext (0.18.1.1-3) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu1) ...
Setting up debhelper (8.1.3) ...
Setting up ttf-dejavu-core (2.33-1) ...
Setting up fontconfig-config (2.8.0-2.1) ...
Setting up libexpat1 (2.0.1-7) ...
Setting up libfreetype6 (2.4.4-1) ...
Setting up libfontconfig1 (2.8.0-2.1) ...
Setting up libjpeg62 (6b1-1) ...
Setting up libpng12-0 (1.2.44-2) ...
Setting up libxau6 (1:1.0.6-1) ...
Setting up libxdmcp6 (1:1.1.0-1) ...
Setting up libxcb1 (1.7-2) ...
Setting up libx11-data (2:1.4.3-1) ...
Setting up libx11-6 (2:1.4.3-1) ...
Setting up libxpm4 (1:3.5.9-1) ...
Setting up libgd2-xpm (2.0.36~rc1~dfsg-5) ...
Setting up libgd-gd2-perl (1:2.45-2) ...
Setting up libbio-graphics-perl (2.14-1) ...
Setting up libcapture-tiny-perl (0.10-1) ...
Setting up libcgi-session-perl (4.43-1) ...
Setting up libnet-daemon-perl (0.47-1) ...
Setting up libplrpc-perl (0.2020-2) ...
Setting up libdbi-perl (1.616-1) ...
Setting up libdbd-sqlite3-perl (1.31-2) ...
Setting up libencode-locale-perl (1.02-1) ...
Setting up libhttp-date-perl (6.00-1) ...
Setting up libfile-listing-perl (6.01-1) ...
Setting up liburi-perl (1.58-1) ...
Setting up libhtml-tagset-perl (3.20-2) ...
Setting up libhtml-parser-perl (3.68-1) ...
Setting up libhtml-tree-perl (4.1-1) ...
Setting up liblwp-mediatypes-perl (6.01-1) ...
Setting up libhttp-message-perl (6.01-1) ...
Setting up libhttp-cookies-perl (6.00-2) ...
Setting up libhttp-daemon-perl (6.00-1) ...
Setting up libhttp-negotiate-perl (6.00-2) ...
Setting up libjs-prototype (1.7.0-2) ...
Setting up libjs-scriptaculous (1.9.0-2) ...
Setting up libjson-perl (2.51-1) ...
Setting up libnet-http-perl (6.00-1) ...
Setting up libstatistics-descriptive-perl (3.0201-1) ...
Setting up libterm-readkey-perl (2.30-4) ...
Setting up libwww-robotrules-perl (6.01-1) ...
Setting up libwww-perl (6.01-3) ...
Setting up sqlite3 (3.7.5-1) ...
Setting up sbuild-build-depends-gbrowse-dummy (0.invalid.0) ...
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? Build environment ?
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Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64)
Toolchain package versions: binutils_2.21.0.20110327-3 dpkg-dev_1.16.0.1 g++-4.5_4.5.2-8 gcc-4.5_4.5.2-8 libc6-dev_2.11.2-13 libstdc++6_4.6.0-2 libstdc++6-4.5-dev_4.5.2-8 linux-libc-dev_2.6.38-3
Package versions: apt_0.8.13.2 base-files_6.3 base-passwd_3.5.22 bash_4.1-3 binutils_2.21.0.20110327-3 bioperl_1.6.1-2 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9.1 build-essential_11.5 bzip2_1.0.5-6 ca-certificates_20090814+nmu3 coreutils_8.5-1 cpp_4:4.5.2-5 cpp-4.5_4.5.2-8 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debfoster_2.7-1.1 debhelper_8.1.3 debian-archive-keyring_2010.08.28 debianutils_3.4.4 diffutils_1:3.0-1 dpkg_1.16.0.1 dpkg-dev_1.16.0.1 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.15.1-1 file_5.04-5 findutils_4.4.2-1+b1 fontconfig-config_2.8.0-2.1 g++_4:4.5.2-5 g++-4.5_4.5.2-8 gcc_4:4.5.2-5 gcc-4.4-base_4.4.5-15 gcc-4.5_4.5.2-8 gcc-4.5-base_4.5.2-8 gcc-4.6-base_4.6.0-2 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.11-3 gpgv_1.4.11-3 grep_2.6.3-3 groff-base_1.21-5 gzip_1.3.12-9 hostname_3.06 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2.1 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libbio-graphics-perl_2.14-1 libblkid1_2.17.2-9.1 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-13 libc-dev-bin_2.11.2-13 libc6_2.11.2-13 libc6-dev_2.11.2-13 libcapture-tiny-perl_0.10-1 libcgi-session-perl_4.43-1 libcloog-ppl0_0.15.9-3 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdata-stag-perl_0.11-2 libdb4.7_4.7.25-12 libdb4.8_4.8.30-5 libdbd-sqlite3-perl_1.31-2 libdbi-perl_1.616-1 libdpkg-perl_1.16.0.1 libelfg0_0.8.13-1 libencode-locale-perl_1.02-1 libexpat1_2.0.1-7 libfile-listing-perl_6.01-1 libfontconfig1_2.8.0-2.1 libfreetype6_2.4.4-1 libgc1c2_1:7.1-7 libgcc1_1:4.6.0-2 libgd-gd2-perl_1:2.45-2 libgd2-xpm_2.0.36~rc1~dfsg-5 libgdbm3_1.8.3-9 libglib2.0-0_2.28.4-1 libgmp10_2:5.0.1+dfsg-7 libgmpxx4ldbl_2:5.0.1+dfsg-7 libgomp1_4.6.0-2 libhtml-parser-perl_3.68-1 libhtml-tagset-perl_3.20-2 libhtml-tree-perl_4.1-1 libhttp-cookies-perl_6.00-2 libhttp-daemon-perl_6.00-1 libhttp-date-perl_6.00-1 libhttp-message-perl_6.01-1 libhttp-negotiate-perl_6.00-2 libio-string-perl_1.08-2 libjpeg62_6b1-1 libjs-prototype_1.7.0-2 libjs-scriptaculous_1.9.0-2 libjson-perl_2.51-1 liblocale-gettext-perl_1.05-6 liblwp-mediatypes-perl_6.01-1 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpc2_0.9-2 libmpfr4_3.0.0-9 libncurses5_5.9-1 libnet-daemon-perl_0.47-1 libnet-http-perl_6.00-1 libpam-modules_1.1.2-2 libpam-runtime_1.1.2-2 libpam0g_1.1.2-2 libpcre3_8.12-3 libpipeline1_1.2.0-1 libplrpc-perl_0.2020-2 libpng12-0_1.2.44-2 libppl-c4_0.11.2-3 libppl9_0.11.2-3 libpwl5_0.11.2-3 libreadline6_6.1-3 libselinux1_2.0.98-1 libsepol1_2.0.42-1 libslang2_2.2.3-3 libsqlite3-0_3.7.5-1 libss2_1.41.12-2 libssl1.0.0_1.0.0d-1 libstatistics-descriptive-perl_3.0201-1 libstdc++6_4.6.0-2 libstdc++6-4.5-dev_4.5.2-8 libterm-readkey-perl_2.30-4 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 liburi-perl_1.58-1 libusb-0.1-4_2:0.1.12-17 libuuid1_2.17.2-9.1 libwww-perl_6.01-3 libwww-robotrules-perl_6.01-1 libx11-6_2:1.4.3-1 libx11-data_2:1.4.3-1 libxau6_1:1.0.6-1 libxcb1_1.7-2 libxdmcp6_1:1.1.0-1 libxml2_2.7.8.dfsg-2 libxpm4_1:3.5.9-1 linux-libc-dev_2.6.38-3 login_1:4.1.4.2+svn3283-3 lsb-base_3.2-27 make_3.81-8.1 man-db_2.6.0.1-1 mawk_1.3.3-15 mount_2.17.2-9.1 ncurses-base_5.9-1 ncurses-bin_5.9-1 netbase_4.45 openssl_1.0.0d-1 passwd_1:4.1.4.2+svn3283-3 patch_2.6.1-1 perl_5.10.1-19 perl-base_5.10.1-19 perl-modules_5.10.1-19 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-gbrowse-dummy_0.invalid.0 sed_4.2.1-9 sensible-utils_0.0.6 sqlite3_3.7.5-1 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 ttf-dejavu-core_2.33-1 tzdata_2011e-1 ucf_3.0025+nmu1 util-linux_2.17.2-9.1 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3
????????????????????????????????????????????????????????????????????????????????
? Build ?
????????????????????????????????????????????????????????????????????????????????
Unpack source
?????????????
dpkg-source: warning: extracting unsigned source package (gbrowse_2.26~dfsg-1.dsc)
dpkg-source: info: extracting gbrowse in gbrowse-2.26~dfsg
dpkg-source: info: unpacking gbrowse_2.26~dfsg.orig.tar.bz2
dpkg-source: info: unpacking gbrowse_2.26~dfsg-1.debian.tar.gz
dpkg-source: info: applying debian-packaging-patch
dpkg-source: info: applying manpages.patch
Check disc space
????????????????
Sufficient free space for build
dpkg-buildpackage
?????????????????
dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package gbrowse
dpkg-buildpackage: source version 2.26~dfsg-1
dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
dpkg-source --before-build gbrowse-2.26~dfsg
dpkg-buildpackage: host architecture amd64
fakeroot debian/rules clean
dh clean
dh_testdir
dh_auto_clean
dh_clean
dpkg-source -b gbrowse-2.26~dfsg
dpkg-source: info: using source format `3.0 (quilt)'
dpkg-source: info: building gbrowse using existing ./gbrowse_2.26~dfsg.orig.tar.bz2
dpkg-source: info: building gbrowse in gbrowse_2.26~dfsg-1.debian.tar.gz
dpkg-source: info: building gbrowse in gbrowse_2.26~dfsg-1.dsc
debian/rules build
dh build
dh_testdir
debian/rules override_dh_auto_configure
make[1]: Entering directory `/«BUILDDIR»/gbrowse-2.26~dfsg'
dh_auto_configure -- --conf=/etc/gbrowse --htdocs=/usr/share/gbrowse/htdocs --tmp=/var/cache/gbrowse --databases=/var/lib/gbrowse/databases --cgibin=/usr/lib/cgi-bin/gbrowse --www-user=www-data --registration_done=1
* Optional prerequisite Bio::Das is not installed
* Optional prerequisite GD::SVG is not installed
* Optional prerequisite Bio::DB::BigFile is not installed
* Optional prerequisite DBD::Pg is not installed
* Optional prerequisite DB_File::Lock is not installed
* Optional prerequisite Template is not installed
* Optional prerequisite DBD::mysql is not installed
* Optional prerequisite File::NFSLock is not installed
* Optional prerequisite Net::OpenID::Consumer is not installed
* Optional prerequisite Crypt::SSLeay is not installed
* Optional prerequisite Net::SMTP::SSL is not installed
* Optional prerequisite Bio::DB::Sam is not installed
* Optional prerequisite FCGI is not installed
ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions
of the modules indicated above before proceeding with this installation
* Do not worry if some "recommended" prerequisites are missing. You can install *
* them later if you need the features they provide. Do not proceed with the *
* install if any of "REQUIRED" prerequisites are missing. *
* *
* The optional Safe::World module does not currently run on Perl 5.10 or *
* higher, and so cannot be installed. *
**** WARNING *****************************************************************************************
If you are upgrading from an earlier version of GBrowse and wish to use named user accounts, please
set "user_accounts" to 1 in /etc/gbrowse2/GBrowse.conf and run bin/gbrowse_metadb_config.pl to
create/update your user account database.
See /etc/gbrowse2/GBrowse.conf.new for suggested settings.
******************************************************************************************************
Checking whether your kit is complete...
Looks good
Checking prerequisites...
cc -I/usr/lib/perl/5.10/CORE -fPIC -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -g -o /tmp/compilet-851937794.o /tmp/compilet-851937794.c
cc -shared -O2 -g -L/usr/local/lib -fstack-protector -o /tmp/compilet-851937794.so /tmp/compilet-851937794.o
Creating new 'Build' script for 'GBrowse' version '2.26'
Now run:
./Build test
./Build demo (optional)
./Build install (as superuser/administrator)
-or-
./Build install_slave (optional, for slave installations)
Other useful targets:
./Build register (to register your copy of GBrowse)
./Build reconfig (to reconfigure install locations)
./Build demostop (to stop the demo)
make[1]: Leaving directory `/«BUILDDIR»/gbrowse-2.26~dfsg'
dh_auto_build
NOTE: Run ./Build reconfig to change existing configuration.
Copying lib/Bio/Graphics/Browser2/DataLoader/bed.pm -> blib/lib/Bio/Graphics/Browser2/DataLoader/bed.pm
Copying lib/Bio/Graphics/Browser2/RemoteSet.pm -> blib/lib/Bio/Graphics/Browser2/RemoteSet.pm
Copying lib/Legacy/Graphics/Browser/PageSettings.pm -> blib/lib/Legacy/Graphics/Browser/PageSettings.pm
Copying lib/Bio/Graphics/Browser2/I18n.pm -> blib/lib/Bio/Graphics/Browser2/I18n.pm
Copying lib/Bio/Graphics/Browser2/RenderPanels.pm -> blib/lib/Bio/Graphics/Browser2/RenderPanels.pm
Copying lib/Legacy/DB/SyntenyIO.pm -> blib/lib/Legacy/DB/SyntenyIO.pm
Copying lib/Bio/Graphics/Browser2/PluginSet.pm -> blib/lib/Bio/Graphics/Browser2/PluginSet.pm
Copying lib/Bio/Graphics/Browser2/OptionPick.pm -> blib/lib/Bio/Graphics/Browser2/OptionPick.pm
Copying lib/Bio/Graphics/Browser2/Plugin.pm -> blib/lib/Bio/Graphics/Browser2/Plugin.pm
Copying lib/Bio/Graphics/Browser2/DataLoader/gff.pm -> blib/lib/Bio/Graphics/Browser2/DataLoader/gff.pm
Copying lib/Bio/Graphics/Karyotype.pm -> blib/lib/Bio/Graphics/Karyotype.pm
Copying lib/Bio/Graphics/Browser2/Realign.pm -> blib/lib/Bio/Graphics/Browser2/Realign.pm
Copying lib/Bio/DB/Tagger/mysql.pm -> blib/lib/Bio/DB/Tagger/mysql.pm
Copying lib/Bio/Graphics/Browser2/Util.pm -> blib/lib/Bio/Graphics/Browser2/Util.pm
Copying lib/Bio/DB/GFF/Aggregator/reftranscript.pm -> blib/lib/Bio/DB/GFF/Aggregator/reftranscript.pm
Copying lib/Bio/Graphics/Browser2/UserDB.pm -> blib/lib/Bio/Graphics/Browser2/UserDB.pm
Copying lib/Bio/Graphics/Browser2/DataLoader.pm -> blib/lib/Bio/Graphics/Browser2/DataLoader.pm
Copying lib/Bio/Graphics/GBrowseFeature.pm -> blib/lib/Bio/Graphics/GBrowseFeature.pm
Copying lib/Bio/Graphics/Browser2/DataLoader/featurefile.pm -> blib/lib/Bio/Graphics/Browser2/DataLoader/featurefile.pm
Copying lib/Bio/DB/Tagger.pm -> blib/lib/Bio/DB/Tagger.pm
Copying lib/Bio/Graphics/Browser2/DataLoader/bigwig.pm -> blib/lib/Bio/Graphics/Browser2/DataLoader/bigwig.pm
Copying lib/Bio/Graphics/Browser2/CAlign.pm -> blib/lib/Bio/Graphics/Browser2/CAlign.pm
Copying lib/Bio/Graphics/Browser2/Plugin/AuthPlugin.pm -> blib/lib/Bio/Graphics/Browser2/Plugin/AuthPlugin.pm
Copying lib/Bio/Graphics/Browser2/DataLoader/bam.pm -> blib/lib/Bio/Graphics/Browser2/DataLoader/bam.pm
Copying lib/Bio/Graphics/Browser2/CachedTrack.pm -> blib/lib/Bio/Graphics/Browser2/CachedTrack.pm
Copying lib/Legacy/Graphics/Browser/Synteny.pm -> blib/lib/Legacy/Graphics/Browser/Synteny.pm
Copying lib/Bio/Graphics/Browser2/Shellwords.pm -> blib/lib/Bio/Graphics/Browser2/Shellwords.pm
Copying lib/Bio/DB/GFF/Aggregator/waba_alignment.pm -> blib/lib/Bio/DB/GFF/Aggregator/waba_alignment.pm
Copying lib/Bio/Graphics/Browser2/Render/Login.pm -> blib/lib/Bio/Graphics/Browser2/Render/Login.pm
Copying lib/Bio/DB/SeqFeature/Store/BedLoader.pm -> blib/lib/Bio/DB/SeqFeature/Store/BedLoader.pm
Copying lib/Bio/Graphics/Browser2/DataLoader/wiggle.pm -> blib/lib/Bio/Graphics/Browser2/DataLoader/wiggle.pm
Copying lib/Bio/Graphics/Browser2/Render/Slave.pm -> blib/lib/Bio/Graphics/Browser2/Render/Slave.pm
Copying lib/Bio/DB/Tagger/Tag.pm -> blib/lib/Bio/DB/Tagger/Tag.pm
Copying lib/Bio/Graphics/Browser2/DataLoader/generic.pm -> blib/lib/Bio/Graphics/Browser2/DataLoader/generic.pm
Copying lib/Bio/Graphics/Browser2/UserTracks.pm -> blib/lib/Bio/Graphics/Browser2/UserTracks.pm
Copying lib/Legacy/Graphics/Browser/Util.pm -> blib/lib/Legacy/Graphics/Browser/Util.pm
Copying lib/Legacy/DB/SyntenyBlock.pm -> blib/lib/Legacy/DB/SyntenyBlock.pm
Copying lib/Bio/DB/GFF/Aggregator/wormbase_gene.pm -> blib/lib/Bio/DB/GFF/Aggregator/wormbase_gene.pm
Copying lib/Bio/Graphics/Browser2/ExternalData.pm -> blib/lib/Bio/Graphics/Browser2/ExternalData.pm
Copying lib/Bio/Graphics/Browser2/SubtrackTable.pm -> blib/lib/Bio/Graphics/Browser2/SubtrackTable.pm
Copying lib/Bio/Graphics/Browser2/UserTracks/Filesystem.pm -> blib/lib/Bio/Graphics/Browser2/UserTracks/Filesystem.pm
Copying lib/Bio/Graphics/Browser2/Session.pm -> blib/lib/Bio/Graphics/Browser2/Session.pm
Copying lib/Bio/Graphics/Browser2/Render/HTML.pm -> blib/lib/Bio/Graphics/Browser2/Render/HTML.pm
Copying lib/Bio/Graphics/Browser2/TrackDumper.pm -> blib/lib/Bio/Graphics/Browser2/TrackDumper.pm
Copying lib/Bio/Graphics/Browser2/DataBase.pm -> blib/lib/Bio/Graphics/Browser2/DataBase.pm
Copying lib/Bio/Graphics/Browser2/RegionSearch.pm -> blib/lib/Bio/Graphics/Browser2/RegionSearch.pm
Copying lib/Bio/Graphics/Browser2/DataLoader/gff3.pm -> blib/lib/Bio/Graphics/Browser2/DataLoader/gff3.pm
Copying lib/Legacy/Graphics/Browser.pm -> blib/lib/Legacy/Graphics/Browser.pm
Copying lib/Bio/DB/GFF/Aggregator/match_gap.pm -> blib/lib/Bio/DB/GFF/Aggregator/match_gap.pm
Copying lib/CGI/Toggle.pm -> blib/lib/CGI/Toggle.pm
Copying lib/Bio/Graphics/Browser2.pm -> blib/lib/Bio/Graphics/Browser2.pm
Copying lib/Bio/Graphics/Browser2/PadAlignment.pm -> blib/lib/Bio/Graphics/Browser2/PadAlignment.pm
Copying lib/Bio/Graphics/Browser2/UserTracks/Database.pm -> blib/lib/Bio/Graphics/Browser2/UserTracks/Database.pm
Copying lib/Bio/Graphics/Browser2/AuthorizedFeatureFile.pm -> blib/lib/Bio/Graphics/Browser2/AuthorizedFeatureFile.pm
Copying lib/Bio/Graphics/Browser2/Markup.pm -> blib/lib/Bio/Graphics/Browser2/Markup.pm
Copying lib/Bio/Graphics/Browser2/Region.pm -> blib/lib/Bio/Graphics/Browser2/Region.pm
Copying lib/Bio/Graphics/Browser2/Render.pm -> blib/lib/Bio/Graphics/Browser2/Render.pm
Copying lib/Bio/Graphics/Browser2/GFFhelper.pm -> blib/lib/Bio/Graphics/Browser2/GFFhelper.pm
Copying lib/Legacy/Graphics/Browser/I18n.pm -> blib/lib/Legacy/Graphics/Browser/I18n.pm
Copying lib/Bio/Graphics/Browser2/DataSource.pm -> blib/lib/Bio/Graphics/Browser2/DataSource.pm
Copying lib/Bio/Graphics/Browser2/Render/Slave/Status.pm -> blib/lib/Bio/Graphics/Browser2/Render/Slave/Status.pm
Copying lib/Bio/Graphics/Browser2/DataLoader/sam.pm -> blib/lib/Bio/Graphics/Browser2/DataLoader/sam.pm
Copying lib/Bio/Graphics/Browser2/Action.pm -> blib/lib/Bio/Graphics/Browser2/Action.pm
lib/Bio/Graphics/Browser2/CAlign.xs -> lib/Bio/Graphics/Browser2/CAlign.c
cc -I/«BUILDDIR»/gbrowse-2.26~dfsg/libalign -I/usr/lib/perl/5.10/CORE -DXS_VERSION="2.26" -DVERSION="2.26" -fPIC -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -g -o lib/Bio/Graphics/Browser2/CAlign.o lib/Bio/Graphics/Browser2/CAlign.c
ExtUtils::Mkbootstrap::Mkbootstrap('blib/arch/auto/Bio/Graphics/Browser2/CAlign/CAlign.bs')
cc -shared -O2 -g -L/usr/local/lib -fstack-protector -o blib/arch/auto/Bio/Graphics/Browser2/CAlign/CAlign.so lib/Bio/Graphics/Browser2/CAlign.o
Performing variable substitutions in blib/conf/detail_select_menu.conf
Copying bin/gbrowse_syn_load_alignment_database.pl -> blib/script/gbrowse_syn_load_alignment_database.pl
Deleting blib/script/gbrowse_syn_load_alignment_database.pl.bak
Copying bin/gbrowse_syn_load_alignments_msa.pl -> blib/script/gbrowse_syn_load_alignments_msa.pl
Deleting blib/script/gbrowse_syn_load_alignments_msa.pl.bak
Copying bin/gbrowse_metadb_config.pl -> blib/script/gbrowse_metadb_config.pl
Deleting blib/script/gbrowse_metadb_config.pl.bak
Copying bin/gbrowse_clean.pl -> blib/script/gbrowse_clean.pl
Deleting blib/script/gbrowse_clean.pl.bak
Copying bin/gbrowse_change_passwd.pl -> blib/script/gbrowse_change_passwd.pl
Deleting blib/script/gbrowse_change_passwd.pl.bak
Copying bin/wiggle2gff3.pl -> blib/script/wiggle2gff3.pl
Deleting blib/script/wiggle2gff3.pl.bak
Copying bin/gbrowse_set_admin_passwd.pl -> blib/script/gbrowse_set_admin_passwd.pl
Deleting blib/script/gbrowse_set_admin_passwd.pl.bak
Copying bin/gbrowse_slave -> blib/script/gbrowse_slave
Deleting blib/script/gbrowse_slave.bak
Copying bin/ucsc_genes2gff.pl -> blib/script/ucsc_genes2gff.pl
Deleting blib/script/ucsc_genes2gff.pl.bak
Copying bin/make_das_conf.pl -> blib/script/make_das_conf.pl
Deleting blib/script/make_das_conf.pl.bak
Copying bin/load_genbank.pl -> blib/script/load_genbank.pl
Deleting blib/script/load_genbank.pl.bak
Copying bin/gtf2gff3.pl -> blib/script/gtf2gff3.pl
Deleting blib/script/gtf2gff3.pl.bak
Copying bin/bed2gff3.pl -> blib/script/bed2gff3.pl
Deleting blib/script/bed2gff3.pl.bak
Copying bin/gbrowse_create_account.pl -> blib/script/gbrowse_create_account.pl
Deleting blib/script/gbrowse_create_account.pl.bak
Copying bin/scan_gbrowse.pl -> blib/script/scan_gbrowse.pl
Deleting blib/script/scan_gbrowse.pl.bak
Copying conf/detail_select_menu.conf -> blib/conf/detail_select_menu.conf
Performing variable substitutions in blib/conf/enzymes.txt
Performing variable substitutions in blib/conf/GBrowse.conf
Performing variable substitutions in blib/conf/log4perl.conf
Performing variable substitutions in blib/conf/MobyServices/moby.conf
Performing variable substitutions in blib/conf/pop_demo.conf
Copying conf/enzymes.txt -> blib/conf/enzymes.txt
Copying conf/GBrowse.conf -> blib/conf/GBrowse.conf
Copying conf/languages/de.pm -> blib/conf/languages/de.pm
Copying conf/languages/en.pm -> blib/conf/languages/en.pm
Copying conf/languages/es.pm -> blib/conf/languages/es.pm
Copying conf/languages/fr.pm -> blib/conf/languages/fr.pm
Copying conf/languages/is.pm -> blib/conf/languages/is.pm
Copying conf/languages/it.pm -> blib/conf/languages/it.pm
Copying conf/languages/ja.pm -> blib/conf/languages/ja.pm
Copying conf/languages/ko.pm -> blib/conf/languages/ko.pm
Copying conf/languages/nl.pm -> blib/conf/languages/nl.pm
Copying conf/languages/pl.pm -> blib/conf/languages/pl.pm
Copying conf/languages/POSIX.pm -> blib/conf/languages/POSIX.pm
Copying conf/languages/ru.pm -> blib/conf/languages/ru.pm
Copying conf/languages/zh.pm -> blib/conf/languages/zh.pm
Copying conf/languages/zh_cn.pm -> blib/conf/languages/zh_cn.pm
Copying conf/log4perl.conf -> blib/conf/log4perl.conf
Copying conf/MobyServices/b64_encoded_gif_renderer.pm -> blib/conf/MobyServices/b64_encoded_gif_renderer.pm
Copying conf/MobyServices/b64_encoded_jpeg_renderer.pm -> blib/conf/MobyServices/b64_encoded_jpeg_renderer.pm
Copying conf/MobyServices/GbrowseServices.pm -> blib/conf/MobyServices/GbrowseServices.pm
Copying conf/MobyServices/GbrowseServices.PMS -> blib/conf/MobyServices/GbrowseServices.PMS
Copying conf/MobyServices/moby.conf -> blib/conf/MobyServices/moby.conf
Copying conf/MobyServices/text_formatted_renderer.pm -> blib/conf/MobyServices/text_formatted_renderer.pm
Copying conf/MobyServices/text_html_renderer.pm -> blib/conf/MobyServices/text_html_renderer.pm
Copying conf/MobyServices/text_plain_renderer.pm -> blib/conf/MobyServices/text_plain_renderer.pm
Copying conf/MobyServices/text_xml_renderer.pm -> blib/conf/MobyServices/text_xml_renderer.pm
Copying conf/plugins/Aligner.pm -> blib/conf/plugins/Aligner.pm
Copying conf/plugins/AlignTwoSequences.pm -> blib/conf/plugins/AlignTwoSequences.pm
Performing variable substitutions in blib/conf/slave_preload.conf
Copying conf/plugins/AttributeHiliter.pm -> blib/conf/plugins/AttributeHiliter.pm
Copying conf/plugins/BatchDumper.pm -> blib/conf/plugins/BatchDumper.pm
Copying conf/plugins/Blat.pm -> blib/conf/plugins/Blat.pm
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Copying conf/themes/solid_gray_colors -> blib/conf/themes/solid_gray_colors
Copying conf/themes/transparent_colors -> blib/conf/themes/transparent_colors
Copying conf/themes/warm_colors -> blib/conf/themes/warm_colors
Copying conf/yeast_chr1+2.conf -> blib/conf/yeast_chr1+2.conf
Copying conf/yeast_renderfarm.conf -> blib/conf/yeast_renderfarm.conf
Copying conf/yeast_simple.conf -> blib/conf/yeast_simple.conf
Copying htdocs/annotation_help.html -> blib/htdocs/annotation_help.html
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Copying htdocs/css/dropdown/images/nav-arrow-left.png -> blib/htdocs/css/dropdown/images/nav-arrow-left.png
Copying htdocs/css/dropdown/images/nav-arrow-right-on.png -> blib/htdocs/css/dropdown/images/nav-arrow-right-on.png
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Copying htdocs/css/dropdown/images/nav-arrow-up-open.png -> blib/htdocs/css/dropdown/images/nav-arrow-up-open.png
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Copying htdocs/css/gbrowse_elements.css -> blib/htdocs/css/gbrowse_elements.css
Copying htdocs/css/gbrowse_solid.css -> blib/htdocs/css/gbrowse_solid.css
Copying htdocs/css/gbrowse_transparent.css -> blib/htdocs/css/gbrowse_transparent.css
Copying htdocs/css/gbrowse_warm.css -> blib/htdocs/css/gbrowse_warm.css
Copying htdocs/css/karyotype.css -> blib/htdocs/css/karyotype.css
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Copying htdocs/css/titlebar-safari.css -> blib/htdocs/css/titlebar-safari.css
Copying htdocs/css/tracks.css -> blib/htdocs/css/tracks.css
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Copying htdocs/example_scripts/gbrowse_new_sessionid.pl -> blib/htdocs/example_scripts/gbrowse_new_sessionid.pl
Copying htdocs/example_scripts/gbrowse_upload_data.pl -> blib/htdocs/example_scripts/gbrowse_upload_data.pl
Performing variable substitutions in blib/htdocs/example_scripts/README
Performing variable substitutions in blib/htdocs/gbrowse_karyotype_help.html
Performing variable substitutions in blib/htdocs/gbrowse_syn_help.html
Performing variable substitutions in blib/htdocs/general_help.html
Copying htdocs/example_scripts/gbrowse_upload_file.pl -> blib/htdocs/example_scripts/gbrowse_upload_file.pl
Copying htdocs/example_scripts/README -> blib/htdocs/example_scripts/README
Copying htdocs/example_scripts/test_file.bed -> blib/htdocs/example_scripts/test_file.bed
Copying htdocs/gbrowse_karyotype_help.html -> blib/htdocs/gbrowse_karyotype_help.html
Copying htdocs/gbrowse_syn_help.html -> blib/htdocs/gbrowse_syn_help.html
Copying htdocs/general_help.html -> blib/htdocs/general_help.html
Copying htdocs/general_help.html.zh -> blib/htdocs/general_help.html.zh
Copying htdocs/gmod_cog.jpeg -> blib/htdocs/gmod_cog.jpeg
Copying htdocs/images/backgrounds/cloud.jpg -> blib/htdocs/images/backgrounds/cloud.jpg
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Performing variable substitutions in blib/htdocs/index.html
Performing variable substitutions in blib/htdocs/tutorial/conf_files/elegans_core.conf
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Copying htdocs/js/detailSelect.js -> blib/htdocs/js/detailSelect.js
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Copying htdocs/js/effects.js -> blib/htdocs/js/effects.js
Copying htdocs/js/GBox.js -> blib/htdocs/js/GBox.js
Copying htdocs/js/karyotype.js -> blib/htdocs/js/karyotype.js
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Performing variable substitutions in blib/htdocs/tutorial/conf_files/HEADER.html
Copying htdocs/js/menu.js -> blib/htdocs/js/menu.js
Copying htdocs/js/overviewSelect.js -> blib/htdocs/js/overviewSelect.js
Copying htdocs/js/prototype.js -> blib/htdocs/js/prototype.js
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Copying htdocs/js/rubber.js -> blib/htdocs/js/rubber.js
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Copying htdocs/js/scriptaculous.js -> blib/htdocs/js/scriptaculous.js
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Copying htdocs/js/toggle.js -> blib/htdocs/js/toggle.js
Copying htdocs/js/track.js -> blib/htdocs/js/track.js
Copying htdocs/js/track_configure.js -> blib/htdocs/js/track_configure.js
Copying htdocs/js/track_pan.js -> blib/htdocs/js/track_pan.js
Copying htdocs/js/unittest.js -> blib/htdocs/js/unittest.js
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Copying htdocs/tutorial/bin/make_exon.pl -> blib/htdocs/tutorial/bin/make_exon.pl
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Copying htdocs/tutorial/conf_files/elegans_core.conf -> blib/htdocs/tutorial/conf_files/elegans_core.conf
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Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_final.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_final_withPhylo.conf
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Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_quarter.conf
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Performing variable substitutions in blib/htdocs/tutorial/data_files/HEADER.html
Copying htdocs/tutorial/conf_files/HEADER.html -> blib/htdocs/tutorial/conf_files/HEADER.html
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Copying htdocs/tutorial/conf_files/volvox_final_withPhylo.conf -> blib/htdocs/tutorial/conf_files/volvox_final_withPhylo.conf
Copying htdocs/tutorial/conf_files/volvox_halfway.conf -> blib/htdocs/tutorial/conf_files/volvox_halfway.conf
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Manifying blib/lib/Bio/Graphics/Browser2/GFFhelper.pm -> blib/libdoc/Bio::Graphics::Browser2::GFFhelper.3pm
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dh_auto_test
NOTE: Run ./Build reconfig to change existing configuration.
Use of uninitialized value in pattern match (m//) at /«BUILDDIR»/gbrowse-2.26~dfsg/install_util/GBrowseInstall.pm line 664.
t/00.compile.t ............ ok
t/01.yeast.t .............. ok
t/02.rearchitecture.t ..... ok
t/03.render.t ............. ok
Sometimes this test gets 'stuck'. If this happens, kill the test and Build test again.
t/04.remoteserver.t ....... ok
t/05.deferredrendering.t .. ok
t/06.featuresearch.t ...... ok
t/07.karyotype.t .......... ok
t/08.calign.t ............. ok
All tests successful.
Files=9, Tests=432, 25 wallclock secs ( 0.08 usr 0.01 sys + 9.27 cusr 1.46 csys = 10.82 CPU)
Result: PASS
fakeroot debian/rules binary
dh binary
dh_testroot
dh_prep
dh_installdirs
debian/rules override_dh_auto_install
make[1]: Entering directory `/«BUILDDIR»/gbrowse-2.26~dfsg'
./Build --install_base=debian/gbrowse debianinstall
NOTE: Run ./Build reconfig to change existing configuration.
Use of uninitialized value in pattern match (m//) at /«BUILDDIR»/gbrowse-2.26~dfsg/install_util/GBrowseInstall.pm line 664.
Reading skip patterns from 'INSTALL.SKIP'.
Files found in blib/arch: installing files in blib/lib into architecture dependent library tree
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Installing debian/gbrowse/bin/wiggle2gff3.pl
Installing debian/gbrowse/bin/gbrowse_create_account.pl
Installing debian/gbrowse/bin/gbrowse_set_admin_passwd.pl
Installing debian/gbrowse/bin/gbrowse_syn_load_alignments_msa.pl
Installing debian/gbrowse/bin/ucsc_genes2gff.pl
Installing debian/gbrowse/bin/gbrowse_clean.pl
Installing debian/gbrowse/bin/make_das_conf.pl
Installing debian/gbrowse/bin/gtf2gff3.pl
Installing debian/gbrowse/bin/gbrowse_metadb_config.pl
Writing debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/auto/GBrowse/.packlist
./Build apache_conf > debian/gbrowse/etc/gbrowse/apache2.conf
NOTE: Run ./Build reconfig to change existing configuration.
INSTRUCTIONS: Paste the following into your Apache configuration
file. You may wish to save it separately and include it using the
Apache "Include /path/to/file" directive. Then restart Apache and
point your browser to http://your.site/htdocs/ to start browsing the
sample genomes.
>>>>>> cut here <<<<<
Warning: something's wrong at /«BUILDDIR»/gbrowse-2.26~dfsg/install_util/GBrowseInstall.pm line 339.
perl Build.PL --conf=/etc/gbrowse --htdocs=/usr/share/gbrowse/htdocs --tmp=/var/cache/gbrowse --databases=/var/lib/gbrowse/databases --cgibin=/usr/lib/cgi-bin/gbrowse --www-user=www-data --registration_done=1 --installetc=y
* Optional prerequisite Bio::Das is not installed
* Optional prerequisite GD::SVG is not installed
* Optional prerequisite Bio::DB::BigFile is not installed
* Optional prerequisite DBD::Pg is not installed
* Optional prerequisite DB_File::Lock is not installed
* Optional prerequisite Template is not installed
* Optional prerequisite DBD::mysql is not installed
* Optional prerequisite File::NFSLock is not installed
* Optional prerequisite Net::OpenID::Consumer is not installed
* Optional prerequisite Crypt::SSLeay is not installed
* Optional prerequisite Net::SMTP::SSL is not installed
* Optional prerequisite Bio::DB::Sam is not installed
* Optional prerequisite FCGI is not installed
ERRORS/WARNINGS FOUND IN PREREQUISITES. You may wish to install the versions
of the modules indicated above before proceeding with this installation
* Do not worry if some "recommended" prerequisites are missing. You can install *
* them later if you need the features they provide. Do not proceed with the *
* install if any of "REQUIRED" prerequisites are missing. *
* *
* The optional Safe::World module does not currently run on Perl 5.10 or *
* higher, and so cannot be installed. *
**** WARNING *****************************************************************************************
If you are upgrading from an earlier version of GBrowse and wish to use named user accounts, please
set "user_accounts" to 1 in /etc/gbrowse2/GBrowse.conf and run bin/gbrowse_metadb_config.pl to
create/update your user account database.
See /etc/gbrowse2/GBrowse.conf.new for suggested settings.
******************************************************************************************************
Checking whether your kit is complete...
Looks good
Checking prerequisites...
cc -I/usr/lib/perl/5.10/CORE -fPIC -c -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -g -o /tmp/compilet-14856473.o /tmp/compilet-14856473.c
cc -shared -O2 -g -L/usr/local/lib -fstack-protector -o /tmp/compilet-14856473.so /tmp/compilet-14856473.o
NOTE: Run ./Build reconfig to change existing configuration.
Deleting Build
Removed previous script 'Build'
Creating new 'Build' script for 'GBrowse' version '2.26'
Now run:
./Build test
./Build demo (optional)
./Build install (as superuser/administrator)
-or-
./Build install_slave (optional, for slave installations)
Other useful targets:
./Build register (to register your copy of GBrowse)
./Build reconfig (to reconfigure install locations)
./Build demostop (to stop the demo)
./Build --install_base=debian/gbrowse install_slave
NOTE: Run ./Build reconfig to change existing configuration.
Performing variable substitutions in blib/conf/detail_select_menu.conf
Performing variable substitutions in blib/conf/enzymes.txt
Performing variable substitutions in blib/conf/GBrowse.conf
Performing variable substitutions in blib/conf/log4perl.conf
Performing variable substitutions in blib/conf/MobyServices/moby.conf
Performing variable substitutions in blib/conf/pop_demo.conf
Performing variable substitutions in blib/conf/slave_preload.conf
Performing variable substitutions in blib/conf/submitter_plugin.conf
Performing variable substitutions in blib/conf/synteny/rice_synteny.conf
Performing variable substitutions in blib/conf/synteny/wild_rice_synteny.conf
Performing variable substitutions in blib/conf/themes/solid_gray_colors
Performing variable substitutions in blib/conf/themes/transparent_colors
Performing variable substitutions in blib/conf/themes/warm_colors
Performing variable substitutions in blib/conf/yeast_chr1+2.conf
Performing variable substitutions in blib/conf/yeast_renderfarm.conf
Performing variable substitutions in blib/conf/yeast_simple.conf
Performing variable substitutions in blib/htdocs/annotation_help.html
Performing variable substitutions in blib/htdocs/example_scripts/README
Performing variable substitutions in blib/htdocs/gbrowse_karyotype_help.html
Performing variable substitutions in blib/htdocs/gbrowse_syn_help.html
Performing variable substitutions in blib/htdocs/general_help.html
Performing variable substitutions in blib/htdocs/index.html
Performing variable substitutions in blib/htdocs/tutorial/conf_files/elegans_core.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/elegans_extra.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/HEADER.html
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_final.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_final_withPhylo.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_halfway.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_Phylo.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_quarter.conf
Performing variable substitutions in blib/htdocs/tutorial/conf_files/volvox_refactored.conf
Performing variable substitutions in blib/htdocs/tutorial/data_files/HEADER.html
Performing variable substitutions in blib/htdocs/tutorial/tutorial.html
Performing variable substitutions in blib/htdocs/tutorial/tutorial.phyTreeEdit.html
Performing variable substitutions in blib/etc/default/gbrowse-slave
Performing variable substitutions in blib/etc/init.d/gbrowse-slave
Use of uninitialized value $wwwuser in substitution (s///) at /«BUILDDIR»/gbrowse-2.26~dfsg/install_util/GBrowseInstall.pm line 764, <GEN84> line 19.
Copying etc/default/gbrowse-slave -> blib/etc/default/gbrowse-slave
Copying etc/init.d/gbrowse-slave -> blib/etc/init.d/gbrowse-slave
Writing config notes to blib/lib/GBrowse/ConfigData.pm
Manifying blib/lib/GBrowse/ConfigData.pm -> blib/libdoc/GBrowse::ConfigData.3pm
Reading skip patterns from 'INSTALL.SKIP'.
Files found in blib/arch: installing files in blib/lib into architecture dependent library tree
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/auto/Bio/Graphics/Browser2/CAlign/CAlign.bs (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/auto/Bio/Graphics/Browser2/CAlign/CAlign.so (unchanged)
Skipping debian/gbrowse/man/man1/load_genbank.pl.1p (unchanged)
Skipping debian/gbrowse/man/man1/ucsc_genes2gff.pl.1p (unchanged)
Skipping debian/gbrowse/man/man1/gbrowse_clean.pl.1p (unchanged)
Skipping debian/gbrowse/man/man1/bed2gff3.pl.1p (unchanged)
Skipping debian/gbrowse/man/man1/gtf2gff3.pl.1p (unchanged)
Skipping debian/gbrowse/man/man1/make_das_conf.pl.1p (unchanged)
Skipping debian/gbrowse/man/man1/wiggle2gff3.pl.1p (unchanged)
Installing debian/gbrowse/etc/init.d/gbrowse-slave
Installing debian/gbrowse/etc/default/gbrowse-slave
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Legacy/DB/SyntenyBlock.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Legacy/DB/SyntenyIO.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Legacy/Graphics/Browser.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Legacy/Graphics/Browser/Util.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Legacy/Graphics/Browser/Synteny.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Legacy/Graphics/Browser/PageSettings.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Legacy/Graphics/Browser/I18n.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/DB/Tagger.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/DB/Tagger/Tag.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/DB/Tagger/mysql.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/DB/SeqFeature/Store/BedLoader.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/DB/GFF/Aggregator/match_gap.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/DB/GFF/Aggregator/wormbase_gene.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/DB/GFF/Aggregator/waba_alignment.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/DB/GFF/Aggregator/reftranscript.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/GBrowseFeature.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Karyotype.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/Render.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/UserDB.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/TrackDumper.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/Action.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/DataLoader.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/PluginSet.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/Util.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/GFFhelper.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/Session.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/SubtrackTable.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/ExternalData.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/RegionSearch.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/Markup.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/PadAlignment.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/UserTracks.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/RemoteSet.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/OptionPick.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/Shellwords.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/CAlign.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/RenderPanels.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/DataBase.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/CachedTrack.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/DataSource.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/Plugin.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/I18n.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/Region.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/AuthorizedFeatureFile.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/Realign.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/DataLoader/featurefile.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/DataLoader/wiggle.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/DataLoader/bed.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/DataLoader/sam.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/DataLoader/generic.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/DataLoader/bigwig.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/DataLoader/gff3.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/DataLoader/bam.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/DataLoader/gff.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/Plugin/AuthPlugin.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/UserTracks/Database.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/UserTracks/Filesystem.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/Render/Slave.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/Render/HTML.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/Render/Login.pm (unchanged)
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/Bio/Graphics/Browser2/Render/Slave/Status.pm (unchanged)
Installing debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/GBrowse/ConfigData.pm
Skipping debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/CGI/Toggle.pm (unchanged)
Skipping debian/gbrowse/man/man3/Bio::Graphics::Browser2::OptionPick.3pm (unchanged)
Skipping debian/gbrowse/man/man3/Bio::Graphics::Browser2::DataSource.3pm (unchanged)
Skipping debian/gbrowse/man/man3/Bio::DB::GFF::Aggregator::reftranscript.3pm (unchanged)
Skipping debian/gbrowse/man/man3/Bio::DB::GFF::Aggregator::wormbase_gene.3pm (unchanged)
Skipping debian/gbrowse/man/man3/Bio::Graphics::Browser2::PadAlignment.3pm (unchanged)
Skipping debian/gbrowse/man/man3/GBrowse::ConfigData.3pm (unchanged)
Skipping debian/gbrowse/man/man3/Bio::Graphics::Browser2::Plugin.3pm (unchanged)
Skipping debian/gbrowse/man/man3/Bio::Graphics::Browser2::PluginSet.3pm (unchanged)
Skipping debian/gbrowse/man/man3/Bio::DB::GFF::Aggregator::match_gap.3pm (unchanged)
Skipping debian/gbrowse/man/man3/Bio::Graphics::Browser2::GFFhelper.3pm (unchanged)
Skipping debian/gbrowse/man/man3/Bio::DB::GFF::Aggregator::waba_alignment.3pm (unchanged)
Skipping debian/gbrowse/man/man3/Bio::Graphics::Browser2::RegionSearch.3pm (unchanged)
Skipping debian/gbrowse/man/man3/Bio::Graphics::Browser2::Render.3pm (unchanged)
Skipping debian/gbrowse/man/man3/Bio::DB::Tagger.3pm (unchanged)
Skipping debian/gbrowse/man/man3/Bio::Graphics::Browser2::Util.3pm (unchanged)
Skipping debian/gbrowse/man/man3/Bio::Graphics::Browser2::CAlign.3pm (unchanged)
Skipping debian/gbrowse/man/man3/Bio::Graphics::Browser2::Markup.3pm (unchanged)
Skipping debian/gbrowse/man/man3/Bio::Graphics::Browser2::DataBase.3pm (unchanged)
Skipping debian/gbrowse/man/man3/Legacy::Graphics::Browser.3pm (unchanged)
Skipping debian/gbrowse/man/man3/Bio::Graphics::Browser2::Plugin::AuthPlugin.3pm (unchanged)
Skipping debian/gbrowse/man/man3/Bio::DB::Tagger::Tag.3pm (unchanged)
Skipping debian/gbrowse/man/man3/CGI::Toggle.3pm (unchanged)
Skipping debian/gbrowse/man/man3/Bio::Graphics::Browser2::Region.3pm (unchanged)
Skipping debian/gbrowse/man/man3/Bio::Graphics::Browser2::RenderPanels.3pm (unchanged)
Skipping debian/gbrowse/man/man3/Bio::Graphics::Browser2::AuthorizedFeatureFile.3pm (unchanged)
Skipping debian/gbrowse/man/man3/Bio::Graphics::Browser2::Realign.3pm (unchanged)
Skipping debian/gbrowse/man/man3/Bio::Graphics::Browser2::RemoteSet.3pm (unchanged)
Skipping debian/gbrowse/bin/load_genbank.pl (unchanged)
Skipping debian/gbrowse/bin/bed2gff3.pl (unchanged)
Skipping debian/gbrowse/bin/scan_gbrowse.pl (unchanged)
Skipping debian/gbrowse/bin/gbrowse_slave (unchanged)
Skipping debian/gbrowse/bin/gbrowse_change_passwd.pl (unchanged)
Skipping debian/gbrowse/bin/gbrowse_syn_load_alignment_database.pl (unchanged)
Skipping debian/gbrowse/bin/wiggle2gff3.pl (unchanged)
Skipping debian/gbrowse/bin/gbrowse_create_account.pl (unchanged)
Skipping debian/gbrowse/bin/gbrowse_set_admin_passwd.pl (unchanged)
Skipping debian/gbrowse/bin/gbrowse_syn_load_alignments_msa.pl (unchanged)
Skipping debian/gbrowse/bin/ucsc_genes2gff.pl (unchanged)
Skipping debian/gbrowse/bin/gbrowse_clean.pl (unchanged)
Skipping debian/gbrowse/bin/make_das_conf.pl (unchanged)
Skipping debian/gbrowse/bin/gtf2gff3.pl (unchanged)
Skipping debian/gbrowse/bin/gbrowse_metadb_config.pl (unchanged)
Writing debian/gbrowse/lib/perl5/x86_64-linux-gnu-thread-multi/auto/GBrowse/.packlist
mv debian/gbrowse/lib/perl5/*/* debian/gbrowse/usr/share/perl5/
# Remove arch dependant data
mv debian/gbrowse/usr/share/perl5/auto/Bio/Graphics/Browser2/CAlign/* debian/gbrowse-calign/usr/lib/perl5/auto/Bio/Graphics/Browser2/CAlign/
#rm -rf debian/gbrowse/usr/lib/perl5/auto/Bio/Graphics/Browser2/CAlign
mv debian/gbrowse/usr/share/perl5/Bio/Graphics/Browser2/CAlign.pm debian/gbrowse-calign/usr/lib/perl5/Bio/Graphics/Browser2/CAlign.pm
#rm -f debian/gbrowse/usr/lib/perl5/Bio/Graphics/Browser2/CAlign.pm
rm -rf debian/gbrowse/lib
rm -f debian/gbrowse/usr/share/doc/gbrowse/INSTALL
rm -f debian/gbrowse/usr/share/perl5/auto/GBrowse/.packlist
rm -f debian/gbrowse/usr/share/gbrowse/htdocs/js/prototype.js
rm -f debian/gbrowse/usr/share/gbrowse/htdocs/js/scriptaculous.js
chmod 644 debian/gbrowse/etc/gbrowse/MobyServices/text_xml_renderer.pm
chmod 644 debian/gbrowse/etc/gbrowse/synteny/oryza.synconf.disabled
#Remove database (kept as separate package)
rm -rf debian/gbrowse/var/lib/gbrowse/databases/*
#Rename pl scripts in bin
rename 's/\.pl//' debian/gbrowse/bin/*.pl
mv debian/gbrowse/bin debian/gbrowse/usr/bin
# Activate configuration files.
find /«BUILDDIR»/gbrowse-2.26~dfsg/debian/gbrowse/etc -name '*.new' | xargs rename 's/.new//'
make[1]: Leaving directory `/«BUILDDIR»/gbrowse-2.26~dfsg'
dh_install
dh_installdocs
dh_installchangelogs
dh_installexamples
debian/rules override_dh_installman
make[1]: Entering directory `/«BUILDDIR»/gbrowse-2.26~dfsg'
#Rename due to perl extension seen as polish
rename 's/\.pl\.1p/\.1p/' debian/gbrowse/man/man1/*.pl.1p
mkdir -p debian/gbrowse-calign/man/man3/
mv debian/gbrowse/man/man3/Bio::Graphics::Browser2::CAlign.3pm debian/gbrowse-calign/man/man3/Bio::Graphics::Browser2::CAlign.3pm
dh_installman
rm -rf debian/gbrowse/man
rm -rf debian/gbrowse-calign/man
make[1]: Leaving directory `/«BUILDDIR»/gbrowse-2.26~dfsg'
dh_installcatalogs
dh_installcron
dh_installdebconf
dh_installemacsen
dh_installifupdown
dh_installinfo
dh_installinit
dh_installmenu
dh_installmime
dh_installmodules
dh_installlogcheck
dh_installlogrotate
dh_installpam
dh_installppp
dh_installudev
dh_installwm
dh_installxfonts
dh_installgsettings
dh_bugfiles
dh_lintian
dh_gconf
dh_icons
dh_perl
dh_usrlocal
dh_link
dh_compress
dh_fixperms
dh_strip
dh_makeshlibs
dh_shlibdeps
dh_installdeb
dh_gencontrol
dh_md5sums
debian/rules override_dh_builddeb
make[1]: Entering directory `/«BUILDDIR»/gbrowse-2.26~dfsg'
dh_builddeb -- -Zbzip2
dpkg-deb: building package `gbrowse' in `../gbrowse_2.26~dfsg-1_all.deb'.
dpkg-deb: building package `gbrowse-data' in `../gbrowse-data_2.26~dfsg-1_all.deb'.
dpkg-deb: building package `gbrowse-calign' in `../gbrowse-calign_2.26~dfsg-1_amd64.deb'.
make[1]: Leaving directory `/«BUILDDIR»/gbrowse-2.26~dfsg'
dpkg-genchanges >../gbrowse_2.26~dfsg-1_amd64.changes
dpkg-genchanges: including full source code in upload
dpkg-source --after-build gbrowse-2.26~dfsg
dpkg-buildpackage: full upload (original source is included)
????????????????????????????????????????????????????????????????????????????????
Build finished at 20110413-1522
Finished
????????
I: Built successfully
????????????????????????????????????????????????????????????????????????????????
? Changes ?
????????????????????????????????????????????????????????????????????????????????
gbrowse_2.26~dfsg-1_amd64.changes:
??????????????????????????????????
Format: 1.8
Date: Wed, 13 Apr 2011 14:45:45 +0900
Source: gbrowse
Binary: gbrowse gbrowse-data gbrowse-calign
Architecture: source all amd64
Version: 2.26~dfsg-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Changed-By: Charles Plessy <plessy at debian.org>
Description:
gbrowse - The GMOD Generic Genome Browser
gbrowse-calign - CAlign helper
gbrowse-data - Sample data to use GBrowse
Closes: 429610
Changes:
gbrowse (2.26~dfsg-1) experimental; urgency=low
.
[ Olivier Sallou ]
* Initial Release (Closes: #429610).
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Files:
8af137aa6cac84994e554d1ba01e508a 1560 science optional gbrowse_2.26~dfsg-1.dsc
fa47761fba42f1e7315ae2fc18a75c37 10286481 science optional gbrowse_2.26~dfsg.orig.tar.bz2
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44bd0b039730909b0577a1b6dfbe4db7 2659462 science optional gbrowse_2.26~dfsg-1_all.deb
357151d308c0bd6ad02ca10b325863f3 7555524 science optional gbrowse-data_2.26~dfsg-1_all.deb
2e6618d75f6290ea317f5a29f4f88226 32738 science optional gbrowse-calign_2.26~dfsg-1_amd64.deb
????????????????????????????????????????????????????????????????????????????????
? Package contents ?
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gbrowse_2.26~dfsg-1_all.deb
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new debian package, version 2.0.
size 2659462 bytes: control archive= 14709 bytes.
2538 bytes, 71 lines conffiles
1605 bytes, 30 lines control
39880 bytes, 459 lines md5sums
682 bytes, 33 lines * postinst #!/bin/bash
691 bytes, 32 lines * postrm #!/bin/bash
Package: gbrowse
Version: 2.26~dfsg-1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 7852
Depends: perl, bioperl (>= 1.5.9), libbio-graphics-perl (>= 2.09), libcgi-session-perl (>= 4.02), libgd-gd2-noxpm-perl (>= 2.07) | libgd-gd2-perl (>= 2.07), libio-string-perl, libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, perl (>= 5.10.0) | libextutils-cbuilder-perl, libterm-readkey-perl, sqlite3, libdbd-sqlite3-perl, libjs-prototype (>= 1.7), libjs-scriptaculous (>= 1.9)
Suggests: gbrowse-data, gbrowse-calign
Section: science
Priority: optional
Homepage: http://www.gbrowse.org/
Description: The GMOD Generic Genome Browser
The Generic Genome Browser is a simple but highly
configurable web-based genome browser. It is a component of the
Generic Model Organism Systems Database project (GMOD).
Some of its features:
* Simultaneous bird's eye and detailed views of the genome;
* Scroll, zoom, center;
* Attach arbitrary URLs to any annotation;
* Order and appearance of tracks are customizable by administrator and
end-user;
* Search by annotation ID, name, or comment;
* Supports third party annotation using GFF formats;
* Settings persist across sessions;
* DNA and GFF dumps;
* Connectivity to different databases, including BioSQL and Chado;
* Multi-language support;
* Third-party feature loading;
* Customizable plug-in architecture (e.g. run BLAST, dump & import many
formats, find oligonucleotides, design primers, create restriction maps,
edit features).
drwxr-xr-x root/root 0 2011-04-13 15:21 ./
drwxr-xr-x root/root 0 2011-04-13 15:21 ./etc/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./etc/apache2/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./etc/apache2/conf.d/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./etc/init.d/
-rwxr-xr-x root/root 2263 2011-04-13 15:21 ./etc/init.d/gbrowse-slave
drwxr-xr-x root/root 0 2011-04-13 15:21 ./etc/default/
-rw-r--r-- root/root 271 2011-04-13 15:21 ./etc/default/gbrowse-slave
drwxr-xr-x root/root 0 2011-04-13 15:21 ./etc/gbrowse/
-rw-r--r-- root/root 4226 2011-04-13 15:21 ./etc/gbrowse/yeast_simple.conf
-rw-r--r-- root/root 1822 2011-04-13 15:21 ./etc/gbrowse/submitter_plugin.conf
drwxr-xr-x root/root 0 2011-04-13 15:21 ./etc/gbrowse/languages/
-rw-r--r-- root/root 9741 2011-04-13 15:21 ./etc/gbrowse/languages/is.pm
-rw-r--r-- root/root 28123 2011-04-13 15:21 ./etc/gbrowse/languages/POSIX.pm
-rw-r--r-- root/root 10063 2011-04-13 15:21 ./etc/gbrowse/languages/nl.pm
-rw-r--r-- root/root 27101 2011-04-13 15:21 ./etc/gbrowse/languages/en.pm
-rw-r--r-- root/root 10212 2011-04-13 15:21 ./etc/gbrowse/languages/ru.pm
-rw-r--r-- root/root 7423 2011-04-13 15:21 ./etc/gbrowse/languages/zh.pm
-rw-r--r-- root/root 10812 2011-04-13 15:21 ./etc/gbrowse/languages/es.pm
-rw-r--r-- root/root 9941 2011-04-13 15:21 ./etc/gbrowse/languages/pl.pm
-rw-r--r-- root/root 10134 2011-04-13 15:21 ./etc/gbrowse/languages/ja.pm
-rw-r--r-- root/root 10468 2011-04-13 15:21 ./etc/gbrowse/languages/de.pm
-rw-r--r-- root/root 10013 2011-04-13 15:21 ./etc/gbrowse/languages/it.pm
-rw-r--r-- root/root 8951 2011-04-13 15:21 ./etc/gbrowse/languages/ko.pm
-rw-r--r-- root/root 10605 2011-04-13 15:21 ./etc/gbrowse/languages/fr.pm
-rw-r--r-- root/root 8069 2011-04-13 15:21 ./etc/gbrowse/languages/zh_cn.pm
-rw-r--r-- root/root 2711 2011-04-13 15:21 ./etc/gbrowse/enzymes.txt
drwxr-xr-x root/root 0 2011-04-13 15:21 ./etc/gbrowse/themes/
-rw-r--r-- root/root 251 2011-04-13 15:21 ./etc/gbrowse/themes/warm_colors
-rw-r--r-- root/root 257 2011-04-13 15:21 ./etc/gbrowse/themes/solid_gray_colors
-rw-r--r-- root/root 346 2011-04-13 15:21 ./etc/gbrowse/themes/transparent_colors
-rw-r--r-- root/root 7476 2011-04-13 15:21 ./etc/gbrowse/yeast_chr1+2.conf
drwxr-xr-x root/root 0 2011-04-13 15:21 ./etc/gbrowse/MobyServices/
-rwxr-xr-x root/root 23494 2011-04-13 15:21 ./etc/gbrowse/MobyServices/GbrowseServices.pm
-rw-r--r-- root/root 3791 2011-04-13 15:21 ./etc/gbrowse/MobyServices/text_plain_renderer.pm
-rw-r--r-- root/root 3234 2011-04-13 15:21 ./etc/gbrowse/MobyServices/b64_encoded_jpeg_renderer.pm
-rw-r--r-- root/root 2963 2011-04-13 15:21 ./etc/gbrowse/MobyServices/text_html_renderer.pm
-rw-r--r-- root/root 3314 2011-04-13 15:21 ./etc/gbrowse/MobyServices/text_xml_renderer.pm
-rw-r--r-- root/root 3226 2011-04-13 15:21 ./etc/gbrowse/MobyServices/b64_encoded_gif_renderer.pm
-rw-r--r-- root/root 1840 2011-04-13 15:21 ./etc/gbrowse/MobyServices/moby.conf
-rw-r--r-- root/root 3191 2011-04-13 15:21 ./etc/gbrowse/MobyServices/text_formatted_renderer.pm
-rw-r--r-- root/root 24426 2011-04-13 15:21 ./etc/gbrowse/MobyServices/GbrowseServices.PMS
-rw-r--r-- root/root 304 2011-04-13 15:21 ./etc/gbrowse/slave_preload.conf
drwxr-xr-x root/root 0 2011-04-13 15:21 ./etc/gbrowse/synteny/
-rw-r--r-- root/root 1373 2011-04-13 15:21 ./etc/gbrowse/synteny/oryza.synconf.disabled
-rw-r--r-- root/root 506 2011-04-13 15:21 ./etc/gbrowse/synteny/rice_synteny.conf
-rw-r--r-- root/root 685 2011-04-13 15:21 ./etc/gbrowse/synteny/wild_rice_synteny.conf
-rw-r--r-- root/root 7327 2011-04-13 15:21 ./etc/gbrowse/yeast_renderfarm.conf
-rw-r--r-- root/root 1487 2011-04-13 15:21 ./etc/gbrowse/apache2.conf
drwxr-xr-x root/root 0 2011-04-13 15:21 ./etc/gbrowse/plugins/
-rw-r--r-- root/root 6910 2011-04-13 15:21 ./etc/gbrowse/plugins/TrackDumper.pm
-rw-r--r-- root/root 9593 2011-04-13 15:21 ./etc/gbrowse/plugins/BatchDumper.pm
-rw-r--r-- root/root 3577 2011-04-13 15:21 ./etc/gbrowse/plugins/FilterTest.pm
-rw-r--r-- root/root 39755 2011-04-13 15:21 ./etc/gbrowse/plugins/PrimerDesigner.pm
-rw-r--r-- root/root 8697 2011-04-13 15:21 ./etc/gbrowse/plugins/ProteinDumper.pm
-rw-r--r-- root/root 8700 2011-04-13 15:21 ./etc/gbrowse/plugins/SequenceDumper.pm
-rw-r--r-- root/root 573 2011-04-13 15:21 ./etc/gbrowse/plugins/TestFinder.pm
-rw-r--r-- root/root 5608 2011-04-13 15:21 ./etc/gbrowse/plugins/Blat.pm
-rw-r--r-- root/root 5208 2011-04-13 15:21 ./etc/gbrowse/plugins/AttributeHiliter.pm
-rw-r--r-- root/root 4601 2011-04-13 15:21 ./etc/gbrowse/plugins/TrackFinder.pm
-rw-r--r-- root/root 4852 2011-04-13 15:21 ./etc/gbrowse/plugins/RestrictionAnnotator.pm
-rw-r--r-- root/root 4404 2011-04-13 15:21 ./etc/gbrowse/plugins/SourceTrackFinder.pm
-rw-r--r-- root/root 6828 2011-04-13 15:21 ./etc/gbrowse/plugins/CMapDumper.pm
-rw-r--r-- root/root 4198 2011-04-13 15:21 ./etc/gbrowse/plugins/GeneFinder.pm
-rw-r--r-- root/root 2722 2011-04-13 15:21 ./etc/gbrowse/plugins/SimpleTrackFinder.pm
-rw-r--r-- root/root 608 2011-04-13 15:21 ./etc/gbrowse/plugins/test.pm
-rw-r--r-- root/root 7680 2011-04-13 15:21 ./etc/gbrowse/plugins/AlignTwoSequences.pm
-rw-r--r-- root/root 361 2011-04-13 15:21 ./etc/gbrowse/plugins/TestAuthenticator.pm
-rw-r--r-- root/root 1855 2011-04-13 15:21 ./etc/gbrowse/plugins/PamAuthenticate.pm
-rw-r--r-- root/root 2497 2011-04-13 15:21 ./etc/gbrowse/plugins/SinWave.pm
-rw-r--r-- root/root 406 2011-04-13 15:21 ./etc/gbrowse/plugins/TestAuthorizer.pm
-rw-r--r-- root/root 4930 2011-04-13 15:21 ./etc/gbrowse/plugins/OligoFinder.pm
-rw-r--r-- root/root 13442 2011-04-13 15:21 ./etc/gbrowse/plugins/Aligner.pm
-rw-r--r-- root/root 5363 2011-04-13 15:21 ./etc/gbrowse/plugins/Submitter.pm
-rw-r--r-- root/root 3678 2011-04-13 15:21 ./etc/gbrowse/plugins/CreateBlastDB.pm
-rw-r--r-- root/root 18287 2011-04-13 15:21 ./etc/gbrowse/plugins/Spectrogram.pm
-rw-r--r-- root/root 3364 2011-04-13 15:21 ./etc/gbrowse/plugins/RandomGene.pm
-rw-r--r-- root/root 3351 2011-04-13 15:21 ./etc/gbrowse/plugins/FBTableDumper.pm
-rw-r--r-- root/root 8635 2011-04-13 15:21 ./etc/gbrowse/plugins/FastaDumper.pm
-rw-r--r-- root/root 8257 2011-04-13 15:21 ./etc/gbrowse/GBrowse.conf
-rw-r--r-- root/root 3285 2011-04-13 15:21 ./etc/gbrowse/pop_demo.conf
-rw-r--r-- root/root 1636 2011-04-13 15:21 ./etc/gbrowse/detail_select_menu.conf
-rw-r--r-- root/root 1398 2011-04-13 15:21 ./etc/gbrowse/log4perl.conf
drwxr-xr-x root/root 0 2011-04-13 15:21 ./var/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./var/lib/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./var/lib/gbrowse/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./var/lib/gbrowse/databases/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./var/cache/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./var/cache/gbrowse/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./var/cache/gbrowse/sessions/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/lib/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/lib/cgi-bin/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/lib/cgi-bin/gbrowse/
-rwxr-xr-x root/root 37696 2011-04-13 15:21 ./usr/lib/cgi-bin/gbrowse/das
-rwxr-xr-x root/root 28107 2011-04-13 15:21 ./usr/lib/cgi-bin/gbrowse/gbrowse_img
-rwxr-xr-x root/root 21004 2011-04-13 15:21 ./usr/lib/cgi-bin/gbrowse/gbrowse_details
-rwxr-xr-x root/root 54838 2011-04-13 15:21 ./usr/lib/cgi-bin/gbrowse/gbrowse_syn
-rwxr-xr-x root/root 21646 2011-04-13 15:21 ./usr/lib/cgi-bin/gbrowse/gbrowse_gmap
-rwxr-xr-x root/root 3389 2011-04-13 15:21 ./usr/lib/cgi-bin/gbrowse/gbrowse_login
-rwxr-xr-x root/root 1837 2011-04-13 15:21 ./usr/lib/cgi-bin/gbrowse/gbgff
-rwxr-xr-x root/root 1424 2011-04-13 15:21 ./usr/lib/cgi-bin/gbrowse/gbrowse
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/bin/
-rwxr-xr-x root/root 7118 2011-04-13 15:21 ./usr/bin/gbrowse_clean
-rwxr-xr-x root/root 5440 2011-04-13 15:21 ./usr/bin/gbrowse_syn_load_alignment_database
-rwxr-xr-x root/root 8651 2011-04-13 15:21 ./usr/bin/wiggle2gff3
-rwxr-xr-x root/root 32946 2011-04-13 15:21 ./usr/bin/gbrowse_metadb_config
-rwxr-xr-x root/root 6164 2011-04-13 15:21 ./usr/bin/load_genbank
-rwxr-xr-x root/root 2600 2011-04-13 15:21 ./usr/bin/gbrowse_set_admin_passwd
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-rwxr-xr-x root/root 8167 2011-04-13 15:21 ./usr/bin/ucsc_genes2gff
-rwxr-xr-x root/root 1636 2011-04-13 15:21 ./usr/bin/gbrowse_change_passwd
-rwxr-xr-x root/root 3036 2011-04-13 15:21 ./usr/bin/gbrowse_slave
-rwxr-xr-x root/root 3135 2011-04-13 15:21 ./usr/bin/gbrowse_create_account
-rwxr-xr-x root/root 9556 2011-04-13 15:21 ./usr/bin/gbrowse_syn_load_alignments_msa
-rwxr-xr-x root/root 6495 2011-04-13 15:21 ./usr/bin/make_das_conf
-rwxr-xr-x root/root 47104 2011-04-13 15:21 ./usr/bin/gtf2gff3
-rwxr-xr-x root/root 2619 2011-04-13 15:21 ./usr/bin/scan_gbrowse
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/share/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/share/man/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/share/man/man3/
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-rw-r--r-- root/root 2117 2011-04-13 15:21 ./usr/share/man/man3/Bio::Graphics::Browser2::OptionPick.3pm.gz
-rw-r--r-- root/root 3570 2011-04-13 15:21 ./usr/share/man/man3/Bio::Graphics::Browser2::Plugin::AuthPlugin.3pm.gz
-rw-r--r-- root/root 1932 2011-04-13 15:21 ./usr/share/man/man3/Bio::Graphics::Browser2::Region.3pm.gz
-rw-r--r-- root/root 4303 2011-04-13 15:21 ./usr/share/man/man3/Bio::Graphics::Browser2::Markup.3pm.gz
-rw-r--r-- root/root 2711 2011-04-13 15:21 ./usr/share/man/man3/CGI::Toggle.3pm.gz
-rw-r--r-- root/root 11583 2011-04-13 15:21 ./usr/share/man/man3/Bio::Graphics::Browser2::Plugin.3pm.gz
-rw-r--r-- root/root 4541 2011-04-13 15:21 ./usr/share/man/man3/Bio::Graphics::Browser2::PadAlignment.3pm.gz
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-rw-r--r-- root/root 1947 2011-04-13 15:21 ./usr/share/man/man3/Bio::Graphics::Browser2::Render.3pm.gz
-rw-r--r-- root/root 2494 2011-04-13 15:21 ./usr/share/man/man3/Bio::DB::GFF::Aggregator::waba_alignment.3pm.gz
-rw-r--r-- root/root 1942 2011-04-13 15:21 ./usr/share/man/man3/Bio::Graphics::Browser2::AuthorizedFeatureFile.3pm.gz
-rw-r--r-- root/root 4279 2011-04-13 15:21 ./usr/share/man/man3/Bio::DB::Tagger.3pm.gz
-rw-r--r-- root/root 2049 2011-04-13 15:21 ./usr/share/man/man3/Bio::Graphics::Browser2::DataBase.3pm.gz
-rw-r--r-- root/root 3150 2011-04-13 15:21 ./usr/share/man/man3/Bio::Graphics::Browser2::GFFhelper.3pm.gz
-rw-r--r-- root/root 2097 2011-04-13 15:21 ./usr/share/man/man3/Bio::Graphics::Browser2::RenderPanels.3pm.gz
-rw-r--r-- root/root 2192 2011-04-13 15:21 ./usr/share/man/man3/Bio::DB::GFF::Aggregator::match_gap.3pm.gz
-rw-r--r-- root/root 7919 2011-04-13 15:21 ./usr/share/man/man3/Legacy::Graphics::Browser.3pm.gz
-rw-r--r-- root/root 2451 2011-04-13 15:21 ./usr/share/man/man3/Bio::DB::GFF::Aggregator::reftranscript.3pm.gz
-rw-r--r-- root/root 2637 2011-04-13 15:21 ./usr/share/man/man3/Bio::Graphics::Browser2::Util.3pm.gz
-rw-r--r-- root/root 3764 2011-04-13 15:21 ./usr/share/man/man3/Bio::Graphics::Browser2::RegionSearch.3pm.gz
-rw-r--r-- root/root 2435 2011-04-13 15:21 ./usr/share/man/man3/Bio::Graphics::Browser2::RemoteSet.3pm.gz
-rw-r--r-- root/root 3677 2011-04-13 15:21 ./usr/share/man/man3/Bio::Graphics::Browser2::Realign.3pm.gz
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-rw-r--r-- root/root 2742 2011-04-13 15:21 ./usr/share/man/man3/GBrowse::ConfigData.3pm.gz
-rw-r--r-- root/root 2701 2011-04-13 15:21 ./usr/share/man/man3/Bio::DB::Tagger::Tag.3pm.gz
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/share/man/man1/
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-rw-r--r-- root/root 1134 2011-04-13 15:21 ./usr/share/man/man1/gbrowse.1.gz
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-rw-r--r-- root/root 4488 2011-04-13 15:21 ./usr/share/man/man1/wiggle2gff3.1p.gz
-rw-r--r-- root/root 3305 2011-04-13 15:21 ./usr/share/man/man1/gbrowse_clean.1p.gz
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-rw-r--r-- root/root 2639 2011-04-13 15:21 ./usr/share/man/man1/load_genbank.1p.gz
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-rw-r--r-- root/root 2556 2011-04-13 15:21 ./usr/share/man/man1/ucsc_genes2gff.1p.gz
-rw-r--r-- root/root 5358 2011-04-13 15:21 ./usr/share/man/man1/gtf2gff3.1p.gz
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/share/perl5/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/share/perl5/Legacy/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/share/perl5/Legacy/DB/
-rw-r--r-- root/root 2622 2011-04-13 15:21 ./usr/share/perl5/Legacy/DB/SyntenyBlock.pm
-rw-r--r-- root/root 5390 2011-04-13 15:21 ./usr/share/perl5/Legacy/DB/SyntenyIO.pm
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-rw-r--r-- root/root 9890 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/figures/figure7a.gif
-rw-r--r-- root/root 14473 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/figures/figure23.gif
-rw-r--r-- root/root 14773 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/figures/figure7b.gif
-rw-r--r-- root/root 6208 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/figures/predicted_genes.gif
-rw-r--r-- root/root 3783 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/figures/multiple_alignments3.gif
-rw-r--r-- root/root 10806 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/figures/dna1.gif
-rw-r--r-- root/root 10309 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/figures/figure24.gif
-rw-r--r-- root/root 6755 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/figures/figure10.gif
-rw-r--r-- root/root 7629 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/figures/multiple_alignments2.gif
-rw-r--r-- root/root 14066 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/figures/enhancements1.gif
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/bin/
-rwxr-xr-x root/root 1464 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/bin/make_exon.pl
-rwxr-xr-x root/root 1061 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/bin/random_segments.pl
-rwxr-xr-x root/root 896 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/bin/expression_levels.pl
-rwxr-xr-x root/root 548 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/bin/random_feature.pl
-rwxr-xr-x root/root 166 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/bin/reformat.pl
-rwxr-xr-x root/root 250 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/bin/random_dna.pl
-rw-r--r-- root/root 168938 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/tutorial.html
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/conf_files/
-rw-r--r-- root/root 1102 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/conf_files/volvox.conf
-rw-r--r-- root/root 5647 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/conf_files/volvox_final_withPhylo.conf
-rw-r--r-- root/root 3497 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/conf_files/volvox_quarter.conf
-rw-r--r-- root/root 2582 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/conf_files/elegans_extra.conf
-rw-r--r-- root/root 5271 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/conf_files/volvox_refactored.conf
-rw-r--r-- root/root 1632 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/conf_files/elegans_core.conf
-rw-r--r-- root/root 3690 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/conf_files/volvox_halfway.conf
-rw-r--r-- root/root 587 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/conf_files/volvox_Phylo.conf
-rw-r--r-- root/root 4338 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/conf_files/volvox_final.conf
-rw-r--r-- root/root 292 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/conf_files/HEADER.html
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/dbgff/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/
-rw-r--r-- root/root 286 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_acceptor.gff
-rw-r--r-- root/root 427 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox4b.gff
-rw-r--r-- root/root 993 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox2.gff
-rw-r--r-- root/root 573 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_sts.gff
-rw-r--r-- root/root 679 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_repeats.gff
-rw-r--r-- root/root 296 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox4a.gff
-rw-r--r-- root/root 915 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox1.gff
-rw-r--r-- root/root 269 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_deletion.gff
-rw-r--r-- root/root 23780 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox6.gff
-rw-r--r-- root/root 7757 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox3.gff
-rw-r--r-- root/root 773 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox7.gff
-rw-r--r-- root/root 198 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox5.gff
-rw-r--r-- root/root 1640 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_extra.gff
-rw-r--r-- root/root 13494 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_core.gff
-rw-r--r-- root/root 1031 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox4.gff
-rw-r--r-- root/root 35771 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox_all.gff
-rw-r--r-- root/root 422 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_expression.gff
-rw-r--r-- root/root 1025 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox8.gff
-rw-r--r-- root/root 72 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox9.gff
-rw-r--r-- root/root 4614 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/tutorial.phyTreeEdit.html
-rw-r--r-- root/root 710 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/tutorial/tutorial.css
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/example_scripts/
-rwxr-xr-x root/root 1354 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/example_scripts/gbrowse_upload_data.pl
-rwxr-xr-x root/root 437 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/example_scripts/gbrowse_get_sessionid.pl
-rw-r--r-- root/root 851 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/example_scripts/README
-rwxr-xr-x root/root 1222 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/example_scripts/gbrowse_upload_file.pl
-rw-r--r-- root/root 46 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/example_scripts/test_file.bed
-rwxr-xr-x root/root 433 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/example_scripts/gbrowse_new_sessionid.pl
-rw-r--r-- root/root 5289 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/gmod_cog.jpeg
-rw-r--r-- root/root 7865 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/general_help.html.zh
lrwxrwxrwx root/root 0 2011-04-13 15:21 ./etc/apache2/conf.d/gbrowse -> ../../gbrowse/apache2.conf
lrwxrwxrwx root/root 0 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/i -> debian/gbrowse/var/cache/gbrowse/images
lrwxrwxrwx root/root 0 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/js/prototype.js -> ../../../javascript/prototype/prototype.js
lrwxrwxrwx root/root 0 2011-04-13 15:21 ./usr/share/gbrowse/htdocs/js/scriptaculous.js -> ../../../javascript/scriptaculous/scriptaculous.js
gbrowse-data_2.26~dfsg-1_all.deb
????????????????????????????????
new debian package, version 2.0.
size 7555524 bytes: control archive= 1189 bytes.
398 bytes, 13 lines control
1289 bytes, 15 lines md5sums
407 bytes, 25 lines * postinst #!/bin/bash
Package: gbrowse-data
Source: gbrowse
Version: 2.26~dfsg-1
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 11792
Recommends: gbrowse
Section: science
Priority: optional
Homepage: http://www.gbrowse.org/
Description: Sample data to use GBrowse
This package contains sample data to test the gbrowse tool
with the Yeast genome.
drwxr-xr-x root/root 0 2011-04-13 15:21 ./
drwxr-xr-x root/root 0 2011-04-13 15:21 ./var/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./var/lib/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./var/lib/gbrowse/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./var/lib/gbrowse/databases/
drwxr-xr-x root/root 0 2011-02-05 03:44 ./var/lib/gbrowse/databases/ideograms/
-rw-r--r-- root/root 81961 2011-02-05 03:44 ./var/lib/gbrowse/databases/ideograms/human_cytobands.gff
-rw-r--r-- root/root 38809 2011-02-05 03:44 ./var/lib/gbrowse/databases/ideograms/mouse_cytobands.gff
-rw-r--r-- root/root 23546 2011-02-05 03:44 ./var/lib/gbrowse/databases/ideograms/rat_cytobands.gff
drwxr-xr-x root/root 0 2011-02-05 03:44 ./var/lib/gbrowse/databases/admin_uploads/
-rw-r--r-- root/root 144 2011-02-05 03:44 ./var/lib/gbrowse/databases/admin_uploads/README
drwxr-xr-x root/root 0 2011-02-05 03:44 ./var/lib/gbrowse/databases/yeast_chr1+2/
-rw-r--r-- root/root 312303 2011-02-05 03:44 ./var/lib/gbrowse/databases/yeast_chr1+2/yeast_chr1+2.gff3
drwxr-xr-x root/root 0 2011-02-05 03:44 ./var/lib/gbrowse/databases/gbrowse_syn/
drwxr-xr-x root/root 0 2011-02-05 03:44 ./var/lib/gbrowse/databases/gbrowse_syn/rice/
-rw-r--r-- root/root 1760301 2011-02-05 03:44 ./var/lib/gbrowse/databases/gbrowse_syn/rice/rice.gff3
drwxr-xr-x root/root 0 2011-02-05 03:44 ./var/lib/gbrowse/databases/gbrowse_syn/alignments/
-rw-r--r-- root/root 6808351 2011-02-05 03:44 ./var/lib/gbrowse/databases/gbrowse_syn/alignments/rice.aln.gz
drwxr-xr-x root/root 0 2011-02-05 03:44 ./var/lib/gbrowse/databases/gbrowse_syn/wild_rice/
-rw-r--r-- root/root 1832286 2011-02-05 03:44 ./var/lib/gbrowse/databases/gbrowse_syn/wild_rice/wild_rice.gff3
drwxr-xr-x root/root 0 2011-02-05 03:44 ./var/lib/gbrowse/databases/yeast_scaffolds/
-rw-r--r-- root/root 826738 2011-02-05 03:44 ./var/lib/gbrowse/databases/yeast_scaffolds/chr2.fa
-rw-r--r-- root/root 234051 2011-02-05 03:44 ./var/lib/gbrowse/databases/yeast_scaffolds/chr1.fa
-rw-r--r-- root/root 192 2011-02-05 03:44 ./var/lib/gbrowse/databases/yeast_scaffolds/chromosomes.gff3
drwxr-xr-x root/root 0 2011-02-05 03:44 ./var/lib/gbrowse/databases/pop_demo/
-rw-r--r-- root/root 490 2011-02-05 03:44 ./var/lib/gbrowse/databases/pop_demo/pop_demo.gff3
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/share/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/share/doc/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/share/doc/gbrowse-data/
-rw-r--r-- root/root 15159 2011-02-05 03:44 ./usr/share/doc/gbrowse-data/changelog.gz
-rw-r--r-- root/root 18191 2011-04-13 14:11 ./usr/share/doc/gbrowse-data/copyright
-rw-r--r-- root/root 180 2011-04-13 14:45 ./usr/share/doc/gbrowse-data/changelog.Debian.gz
gbrowse-calign_2.26~dfsg-1_amd64.deb
????????????????????????????????????
new debian package, version 2.0.
size 32738 bytes: control archive= 734 bytes.
456 bytes, 13 lines control
588 bytes, 7 lines md5sums
Package: gbrowse-calign
Source: gbrowse
Version: 2.26~dfsg-1
Architecture: amd64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 136
Depends: perl (>= 5.10.1-19), perlapi-5.10.1, libc6 (>= 2.3), gbrowse
Section: science
Priority: optional
Homepage: http://www.gbrowse.org/
Description: CAlign helper
This package provides the CAlign helper
for use with Realign. It speeds up Smith-Waterman alignment.
drwxr-xr-x root/root 0 2011-04-13 15:21 ./
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/lib/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/lib/perl5/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/lib/perl5/auto/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/lib/perl5/auto/Bio/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/lib/perl5/auto/Bio/Graphics/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/lib/perl5/auto/Bio/Graphics/Browser2/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/lib/perl5/auto/Bio/Graphics/Browser2/CAlign/
-rw-r--r-- root/root 0 2011-04-13 15:21 ./usr/lib/perl5/auto/Bio/Graphics/Browser2/CAlign/CAlign.bs
-rw-r--r-- root/root 12696 2011-04-13 15:21 ./usr/lib/perl5/auto/Bio/Graphics/Browser2/CAlign/CAlign.so
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/lib/perl5/Bio/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/lib/perl5/Bio/Graphics/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/lib/perl5/Bio/Graphics/Browser2/
-rw-r--r-- root/root 1129 2011-04-13 15:21 ./usr/lib/perl5/Bio/Graphics/Browser2/CAlign.pm
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/share/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/share/man/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/share/man/man3/
-rw-r--r-- root/root 2079 2011-04-13 15:21 ./usr/share/man/man3/Bio::Graphics::Browser2::CAlign.3pm.gz
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/share/doc/
drwxr-xr-x root/root 0 2011-04-13 15:21 ./usr/share/doc/gbrowse-calign/
-rw-r--r-- root/root 15159 2011-02-05 03:44 ./usr/share/doc/gbrowse-calign/changelog.gz
-rw-r--r-- root/root 18191 2011-04-13 14:11 ./usr/share/doc/gbrowse-calign/copyright
-rw-r--r-- root/root 180 2011-04-13 14:45 ./usr/share/doc/gbrowse-calign/changelog.Debian.gz
????????????????????????????????????????????????????????????????????????????????
? Post Build ?
????????????????????????????????????????????????????????????????????????????????
????????????????????????????????????????????????????????????????????????????????
? Cleanup ?
????????????????????????????????????????????????????????????????????????????????
Purging /«CHROOT»/«BUILDDIR»
Reading package lists...
Building dependency tree...
Reading state information...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Reading package lists...
Building dependency tree...
Reading state information...
The following packages will be REMOVED:
bioperl* bsdmainutils* ca-certificates* debhelper* file* fontconfig-config*
gettext* gettext-base* groff-base* html2text* intltool-debian*
libbio-graphics-perl* libcapture-tiny-perl* libcgi-session-perl* libcroco3*
libdata-stag-perl* libdbd-sqlite3-perl* libdbi-perl* libencode-locale-perl*
libexpat1* libfile-listing-perl* libfontconfig1* libfreetype6*
libgd-gd2-perl* libgd2-xpm* libglib2.0-0* libhtml-parser-perl*
libhtml-tagset-perl* libhtml-tree-perl* libhttp-cookies-perl*
libhttp-daemon-perl* libhttp-date-perl* libhttp-message-perl*
libhttp-negotiate-perl* libio-string-perl* libjpeg62* libjs-prototype*
libjs-scriptaculous* libjson-perl* liblwp-mediatypes-perl* libmagic1*
libnet-daemon-perl* libnet-http-perl* libpcre3* libpipeline1* libplrpc-perl*
libpng12-0* libsqlite3-0* libssl1.0.0* libstatistics-descriptive-perl*
libterm-readkey-perl* libunistring0* liburi-perl* libwww-perl*
libwww-robotrules-perl* libx11-6* libx11-data* libxau6* libxcb1* libxdmcp6*
libxml2* libxpm4* man-db* netbase* openssl* po-debconf*
sbuild-build-depends-core-dummy* sbuild-build-depends-gbrowse-dummy*
sqlite3* ttf-dejavu-core* ucf*
0 upgraded, 0 newly installed, 71 to remove and 0 not upgraded.
After this operation, 75.2 MB disk space will be freed.
(Reading database ... 15517 files and directories currently installed.)
Removing sbuild-build-depends-gbrowse-dummy ...
Removing libbio-graphics-perl ...
Removing bioperl ...
Removing debhelper ...
Removing man-db ...
Purging configuration files for man-db ...
Removing bsdmainutils ...
Purging configuration files for bsdmainutils ...
Removing libwww-perl ...
Removing ca-certificates ...
Removing dangling symlinks from /etc/ssl/certs... done.
Purging configuration files for ca-certificates ...
Removing dangling symlinks from /etc/ssl/certs... done.
Removing file ...
Removing libgd-gd2-perl ...
Removing libgd2-xpm ...
Purging configuration files for libgd2-xpm ...
Removing libfontconfig1 ...
Purging configuration files for libfontconfig1 ...
Removing fontconfig-config ...
Purging configuration files for fontconfig-config ...
Removing po-debconf ...
Removing intltool-debian ...
Removing gettext ...
Removing gettext-base ...
Removing groff-base ...
Purging configuration files for groff-base ...
Removing html2text ...
Purging configuration files for html2text ...
Removing libcapture-tiny-perl ...
Removing libcgi-session-perl ...
Removing libcroco3 ...
Purging configuration files for libcroco3 ...
Removing libdata-stag-perl ...
Removing libdbd-sqlite3-perl ...
Removing libdbi-perl ...
Removing libhttp-negotiate-perl ...
Removing libhttp-daemon-perl ...
Removing libhttp-cookies-perl ...
Removing libhttp-message-perl ...
Removing libencode-locale-perl ...
Removing libexpat1 ...
Purging configuration files for libexpat1 ...
Removing libfile-listing-perl ...
Removing libfreetype6 ...
Purging configuration files for libfreetype6 ...
Removing libglib2.0-0 ...
Purging configuration files for libglib2.0-0 ...
Removing libhtml-tree-perl ...
Removing libhtml-parser-perl ...
Removing libhtml-tagset-perl ...
Removing libhttp-date-perl ...
Removing libio-string-perl ...
Removing libjpeg62 ...
Removing libjs-scriptaculous ...
Removing libjs-prototype ...
Removing libjson-perl ...
Removing liblwp-mediatypes-perl ...
Removing libmagic1 ...
Purging configuration files for libmagic1 ...
Removing libplrpc-perl ...
Removing libnet-daemon-perl ...
Removing libnet-http-perl ...
Removing libpcre3 ...
Purging configuration files for libpcre3 ...
Removing libpipeline1 ...
Purging configuration files for libpipeline1 ...
Removing libpng12-0 ...
Purging configuration files for libpng12-0 ...
Removing sqlite3 ...
Removing libsqlite3-0 ...
Purging configuration files for libsqlite3-0 ...
Removing openssl ...
Purging configuration files for openssl ...
Removing libssl1.0.0 ...
Purging configuration files for libssl1.0.0 ...
Removing libstatistics-descriptive-perl ...
Removing libterm-readkey-perl ...
Removing libunistring0 ...
Purging configuration files for libunistring0 ...
Removing libwww-robotrules-perl ...
Removing liburi-perl ...
Removing libxpm4 ...
Purging configuration files for libxpm4 ...
Removing libx11-6 ...
Purging configuration files for libx11-6 ...
Removing libx11-data ...
Removing libxcb1 ...
Purging configuration files for libxcb1 ...
Removing libxau6 ...
Purging configuration files for libxau6 ...
Removing libxdmcp6 ...
Purging configuration files for libxdmcp6 ...
Removing libxml2 ...
Purging configuration files for libxml2 ...
Removing netbase ...
Purging configuration files for netbase ...
Removing sbuild-build-depends-core-dummy ...
Removing ttf-dejavu-core ...
Removing ucf ...
Purging configuration files for ucf ...
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? Summary ?
????????????????????????????????????????????????????????????????????????????????
Architecture: amd64
Build-Space: 80868
Build-Time: 39
Distribution: unstable
Install-Time: 73
Job: gbrowse_2.26~dfsg-1.dsc
Package: gbrowse
Package-Time: 115
Source-Version: 2.26~dfsg-1
Space: 80868
Status: successful
Version: 2.26~dfsg-1
????????????????????????????????????????????????????????????????????????????????
Finished at 20110413-1522
Build needed 00:01:55, 80868k disc space
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