[med-svn] r7461 - in trunk/packages/ssake/tags: . 3.8-1/debian
Charles Plessy
plessy at alioth.debian.org
Mon Aug 15 05:15:41 UTC 2011
Author: plessy
Date: 2011-08-15 05:15:41 +0000 (Mon, 15 Aug 2011)
New Revision: 7461
Added:
trunk/packages/ssake/tags/3.8-1/
trunk/packages/ssake/tags/3.8-1/debian/changelog
trunk/packages/ssake/tags/3.8-1/debian/rules
trunk/packages/ssake/tags/3.8-1/debian/ssake-examples.README.Debian
Removed:
trunk/packages/ssake/tags/3.8-1/debian/changelog
trunk/packages/ssake/tags/3.8-1/debian/rules
trunk/packages/ssake/tags/3.8-1/debian/ssake-examples.README.Debian
Log:
[svn-buildpackage] Tagging ssake 3.8-1
Deleted: trunk/packages/ssake/tags/3.8-1/debian/changelog
===================================================================
--- trunk/packages/ssake/trunk/debian/changelog 2011-08-15 04:24:35 UTC (rev 7458)
+++ trunk/packages/ssake/tags/3.8-1/debian/changelog 2011-08-15 05:15:41 UTC (rev 7461)
@@ -1,69 +0,0 @@
-ssake (3.8-1) UNRELEASED; urgency=low
-
- * New upstream version 30% faster than the previous release. Additional
- assembly control has been implemented (-w) that limits the generation of
- low depth of coverage contigs
- * Use Debhelper 8 (debian/control, debian/compat).
- * Corrected VCS URLs (debian/control).
- * Incremented Standards-Version to indicate conformance with Policy 3.9.2.
- (debian/control, changes needed.)
-
- -- Charles Plessy <plessy at debian.org> Mon, 15 Aug 2011 13:09:18 +0900
-
-ssake (3.7-1) unstable; urgency=low
-
- * New upstream version
- * Standards-Version: 3.9.1 (no changes needed)
- * debian/rules: reflect upstream renamed testdir
-
- -- Andreas Tille <tille at debian.org> Thu, 25 Nov 2010 15:18:09 +0100
-
-ssake (3.5-1) unstable; urgency=low
-
- * New upstream version
- * debian/source/format: Switched to source format 3.0 (quilt)
- * debian/control:
- - Standards-Version: 3.8.4 (no changes needed)
- * debian/rules
- - fixed cut-n-pasto
-
- -- Andreas Tille <tille at debian.org> Thu, 24 Jun 2010 14:06:08 +0200
-
-ssake (3.4-1) unstable; urgency=low
-
- * New upstream release.
- - Fixed a bug in PET routine. User can now track read position and
- individual base coverage for reads *fully embedded* within contigs,
- using the -c option.
- - Version 3.4 exploits paired-end reads to explore possible contig merges
- within scaffolds (Consecutive contigs >= -z bases must overlap by -m
- bases or more).
- * debian/control:
- - Incremented Standards-Version to indicate conformance with Policy 3.8.2.
- (No changes needed.)
- - Using the Unicode ‘prime’ character for the 3′ direction (cosmetic).
- * Simplified debian/copyright according to latest discussions about the
- machine-readable format.
-
- -- Charles Plessy <plessy at debian.org> Tue, 23 Jun 2009 13:58:49 +0900
-
-ssake (3.2.1-2) unstable; urgency=low
-
- * debian/control:
- - ssake and ssake-exmamples now depend on ${misc:Depends}.
- - ssake-examples suggests ssake instead of depending.
- - Reduced redundancy in the description of ssake.
- - Gave a specific description to ssake-examples.
- * debian/ssake.docs, debian/reference: added BibTeX-formatted reference.
- * debian/copyright:
- - Corrected the identity of the upstream maintainer.
- - Points to the version 2 of the GNU GPL.
- - added myself to the Hall of Fame.
-
- -- Charles Plessy <plessy at debian.org> Sat, 07 Mar 2009 13:42:47 +0900
-
-ssake (3.2.1-1) unstable; urgency=low
-
- * Initial release (Closes: #506752)
-
- -- Andreas Tille <tille at debian.org> Mon, 24 Nov 2008 13:12:38 +0100
Copied: trunk/packages/ssake/tags/3.8-1/debian/changelog (from rev 7460, trunk/packages/ssake/trunk/debian/changelog)
===================================================================
--- trunk/packages/ssake/tags/3.8-1/debian/changelog (rev 0)
+++ trunk/packages/ssake/tags/3.8-1/debian/changelog 2011-08-15 05:15:41 UTC (rev 7461)
@@ -0,0 +1,70 @@
+ssake (3.8-1) unstable; urgency=low
+
+ * New upstream version 30% faster than the previous release. Additional
+ assembly control has been implemented (-w) that limits the generation of
+ low depth of coverage contigs.
+ * Use Debhelper 8 (debian/control, debian/compat).
+ * Corrected VCS URLs (debian/control).
+ * Incremented Standards-Version to indicate conformance with Policy 3.9.2.
+ (debian/control, changes needed.)
+ * Implement rudimentary regression tests (debian/rules).
+
+ -- Charles Plessy <plessy at debian.org> Mon, 15 Aug 2011 14:10:18 +0900
+
+ssake (3.7-1) unstable; urgency=low
+
+ * New upstream version
+ * Standards-Version: 3.9.1 (no changes needed)
+ * debian/rules: reflect upstream renamed testdir
+
+ -- Andreas Tille <tille at debian.org> Thu, 25 Nov 2010 15:18:09 +0100
+
+ssake (3.5-1) unstable; urgency=low
+
+ * New upstream version
+ * debian/source/format: Switched to source format 3.0 (quilt)
+ * debian/control:
+ - Standards-Version: 3.8.4 (no changes needed)
+ * debian/rules
+ - fixed cut-n-pasto
+
+ -- Andreas Tille <tille at debian.org> Thu, 24 Jun 2010 14:06:08 +0200
+
+ssake (3.4-1) unstable; urgency=low
+
+ * New upstream release.
+ - Fixed a bug in PET routine. User can now track read position and
+ individual base coverage for reads *fully embedded* within contigs,
+ using the -c option.
+ - Version 3.4 exploits paired-end reads to explore possible contig merges
+ within scaffolds (Consecutive contigs >= -z bases must overlap by -m
+ bases or more).
+ * debian/control:
+ - Incremented Standards-Version to indicate conformance with Policy 3.8.2.
+ (No changes needed.)
+ - Using the Unicode ‘prime’ character for the 3′ direction (cosmetic).
+ * Simplified debian/copyright according to latest discussions about the
+ machine-readable format.
+
+ -- Charles Plessy <plessy at debian.org> Tue, 23 Jun 2009 13:58:49 +0900
+
+ssake (3.2.1-2) unstable; urgency=low
+
+ * debian/control:
+ - ssake and ssake-exmamples now depend on ${misc:Depends}.
+ - ssake-examples suggests ssake instead of depending.
+ - Reduced redundancy in the description of ssake.
+ - Gave a specific description to ssake-examples.
+ * debian/ssake.docs, debian/reference: added BibTeX-formatted reference.
+ * debian/copyright:
+ - Corrected the identity of the upstream maintainer.
+ - Points to the version 2 of the GNU GPL.
+ - added myself to the Hall of Fame.
+
+ -- Charles Plessy <plessy at debian.org> Sat, 07 Mar 2009 13:42:47 +0900
+
+ssake (3.2.1-1) unstable; urgency=low
+
+ * Initial release (Closes: #506752)
+
+ -- Andreas Tille <tille at debian.org> Mon, 24 Nov 2008 13:12:38 +0100
Deleted: trunk/packages/ssake/tags/3.8-1/debian/rules
===================================================================
--- trunk/packages/ssake/trunk/debian/rules 2011-08-15 04:24:35 UTC (rev 7458)
+++ trunk/packages/ssake/tags/3.8-1/debian/rules 2011-08-15 05:15:41 UTC (rev 7461)
@@ -1,16 +0,0 @@
-#!/usr/bin/make -f
-# debian/rules file for ssake
-# (C) Andreas Tille
-# GPL
-
-pkg=ssake
-examples=$(pkg)-examples
-
-include /usr/share/cdbs/1/rules/debhelper.mk
-
-install/$(pkg)::
- cp -a SSAKE `pwd`/debian/$(pkg)/usr/bin/ssake
- cp -a tools/TQS.py `pwd`/debian/$(pkg)/usr/bin/tqs
-
-install/$(examples)::
- cp -a test/* `pwd`/debian/$(examples)/usr/share/doc/$(pkg)/examples
Copied: trunk/packages/ssake/tags/3.8-1/debian/rules (from rev 7459, trunk/packages/ssake/trunk/debian/rules)
===================================================================
--- trunk/packages/ssake/tags/3.8-1/debian/rules (rev 0)
+++ trunk/packages/ssake/tags/3.8-1/debian/rules 2011-08-15 05:15:41 UTC (rev 7461)
@@ -0,0 +1,27 @@
+#!/usr/bin/make -f
+# debian/rules file for ssake
+# (C) Andreas Tille
+# GPL
+
+pkg=ssake
+examples=$(pkg)-examples
+
+include /usr/share/cdbs/1/rules/debhelper.mk
+
+BINDIR := $(CURDIR)/debian/$(pkg)/usr/bin
+DOCDIR := $(CURDIR)/debian/$(examples)/usr/share/doc/$(pkg)
+
+install/$(pkg)::
+ cp -a SSAKE $(BINDIR)/ssake
+ cp -a tools/TQS.py $(BINDIR)/tqs
+
+install/$(examples)::
+ cp -a test/* $(DOCDIR)/examples
+
+ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
+TESTDIR := $(shell mktemp -d)
+binary/$(pkg)::
+ cp -a $(DOCDIR)/examples/* $(TESTDIR)
+ cd $(TESTDIR) && gunzip *.gz && $(BINDIR)/ssake -f Herpesvirus_3.60kb.reads.fa -m 16 -o 2 -r 0.6 -p 0 -t 0 -c 1 -w 5 -b myFirstSSAKErun
+ rm -rf $(TESTDIR)
+endif
Deleted: trunk/packages/ssake/tags/3.8-1/debian/ssake-examples.README.Debian
===================================================================
--- trunk/packages/ssake/trunk/debian/ssake-examples.README.Debian 2011-08-15 04:24:35 UTC (rev 7458)
+++ trunk/packages/ssake/tags/3.8-1/debian/ssake-examples.README.Debian 2011-08-15 05:15:41 UTC (rev 7461)
@@ -1,17 +0,0 @@
-SSAKE examples for Debian
-=========================
-
-Due to the size of the examples which are provided by upstream these files
-are provided in a separate binary package. You can find the files at
-/usr/share/doc/ssake/examples. To test the examples just unpack these
-into your working directory via
-
- cp -a /usr/share/doc/ssake/examples/* .
- gunzip *.gz
- ssake -f Herpesvirus_3.60kb.reads.fa -m 16 -o 2 -r 0.6 -p 0 -t 0
-
-The resultting output file is marked with pid${PROCESSID} - you might
-like to compare with the example output files.
-
- -- Andreas Tille <tille at debian.org> Mon, 24 Nov 2008 13:12:38 +0100
-
\ No newline at end of file
Copied: trunk/packages/ssake/tags/3.8-1/debian/ssake-examples.README.Debian (from rev 7459, trunk/packages/ssake/trunk/debian/ssake-examples.README.Debian)
===================================================================
--- trunk/packages/ssake/tags/3.8-1/debian/ssake-examples.README.Debian (rev 0)
+++ trunk/packages/ssake/tags/3.8-1/debian/ssake-examples.README.Debian 2011-08-15 05:15:41 UTC (rev 7461)
@@ -0,0 +1,17 @@
+SSAKE examples for Debian
+=========================
+
+Due to the size of the examples which are provided by upstream these files
+are provided in a separate binary package. You can find the files at
+/usr/share/doc/ssake/examples. To test the examples just unpack these
+into your working directory via
+
+ cp -a /usr/share/doc/ssake/examples/* .
+ gunzip *.gz
+ ssake -f Herpesvirus_3.60kb.reads.fa -m 16 -o 2 -r 0.6 -p 0 -t 0 -c 1 -w 5 -b myFirstSSAKErun
+
+The resultting output file is marked with pid${PROCESSID} - you might
+like to compare with the example output files.
+
+ -- Andreas Tille <tille at debian.org> Mon, 24 Nov 2008 13:12:38 +0100
+
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