[med-svn] r5697 - in trunk/packages/R/r-cran-genetics/trunk/debian: . source

[Andreas Tille]

Author: tille
Date: 2011-01-24 16:51:18 +0000 (Mon, 24 Jan 2011)
New Revision: 5697

Added:
   trunk/packages/R/r-cran-genetics/trunk/debian/source/
   trunk/packages/R/r-cran-genetics/trunk/debian/source/format
Modified:
   trunk/packages/R/r-cran-genetics/trunk/debian/changelog
   trunk/packages/R/r-cran-genetics/trunk/debian/control
   trunk/packages/R/r-cran-genetics/trunk/debian/copyright
   trunk/packages/R/r-cran-genetics/trunk/debian/rules
Log:
New upstream version, adapted to our R packaging habits


Modified: trunk/packages/R/r-cran-genetics/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-cran-genetics/trunk/debian/changelog	2011-01-24 16:50:26 UTC (rev 5696)
+++ trunk/packages/R/r-cran-genetics/trunk/debian/changelog	2011-01-24 16:51:18 UTC (rev 5697)
@@ -1,3 +1,15 @@
+r-cran-genetics (1.3.5-1) unstable; urgency=low
+
+  * New upstream version
+  * debian/control:
+    - Standards-Version: 3.9.1 (no changes needed)
+    - + debian/rules: Require a number equal or superior than the R version the
+                      package was built with, using a R:Depends substvar.
+  * debian/source/format: 3.0 (quilt)
+  * debian/rules: No executable flag for PDF files
+
+ -- Andreas Tille <tille at debian.org>  Mon, 24 Jan 2011 17:08:21 +0100
+
 r-cran-genetics (1.3.4-1) unstable; urgency=low
 
   [ Charles Plessy ]

Modified: trunk/packages/R/r-cran-genetics/trunk/debian/control
===================================================================
--- trunk/packages/R/r-cran-genetics/trunk/debian/control	2011-01-24 16:50:26 UTC (rev 5696)
+++ trunk/packages/R/r-cran-genetics/trunk/debian/control	2011-01-24 16:51:18 UTC (rev 5697)
@@ -7,14 +7,14 @@
            Charles Plessy <plessy at debian.org>,
            Andreas Tille <tille at debian.org>
 Build-Depends: debhelper (>= 7), cdbs, r-base-dev, r-cran-combinat, r-cran-mvtnorm, r-cran-gdata, r-cran-gtools, r-cran-vr
-Standards-Version: 3.8.3
+Standards-Version: 3.9.1
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/R/r-cran-genetics/trunk/?rev=0&sc=0
 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/R/r-cran-genetics/trunk/
 Homepage: http://cran.r-project.org/web/packages/genetics
 
 Package: r-cran-genetics
 Architecture: all
-Depends: ${misc:Depends}, r-base-core, r-recommended, r-cran-gtools, r-cran-gdata, r-cran-combinat, r-cran-mvtnorm, r-cran-vr
+Depends: ${R:Depends}, ${misc:Depends}, r-recommended, r-cran-gtools, r-cran-gdata, r-cran-combinat, r-cran-mvtnorm, r-cran-vr
 Description: GNU R package for population genetics
  Classes and methods for handling genetic data. Includes
  The package provides a library for the statistics environment R that

Modified: trunk/packages/R/r-cran-genetics/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-cran-genetics/trunk/debian/copyright	2011-01-24 16:50:26 UTC (rev 5696)
+++ trunk/packages/R/r-cran-genetics/trunk/debian/copyright	2011-01-24 16:51:18 UTC (rev 5697)
@@ -1,6 +1,6 @@
 Name      :  genetics
 Contact   :  Gregory Warnes <warnes at bst.rochester.edu>
-Source    :  http://cran.r-project.org/src/contrib/genetics_1.3.4.tar.gz
+Source    :  http://cran.r-project.org/src/contrib/
 
 Copyright :
  Genetics is copyright 2003-2008 of Gregory Warnes

Modified: trunk/packages/R/r-cran-genetics/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-cran-genetics/trunk/debian/rules	2011-01-24 16:50:26 UTC (rev 5696)
+++ trunk/packages/R/r-cran-genetics/trunk/debian/rules	2011-01-24 16:51:18 UTC (rev 5697)
@@ -1,6 +1,11 @@
 #!/usr/bin/make -f
 # 							-*- makefile -*-
-# debian/rules file for the Debian/GNU Linux r-cran-qtl package
-# Copyright 2003-2006 by Dirk Eddelbuettel <edd at debian.org>
+# debian/rules file for the Debian/GNU Linux r-cran-genetics package
+# Copyright 2008 by Steffen Moeller <moeller at debian.org>
 
 include /usr/share/R/debian/r-cran.mk
+
+# Require a number equal or superior than the R version the package was built with.
+install/$(package)::
+	echo "R:Depends=r-base-core (>= $(shell R --version | head -n1 | perl -ne 'print / +([0-9]\.[0-9]+\.[0-9])/')~)" >> debian/$(package).substvars
+	chmod 644 debian/$(package)/usr/lib/R/site-library/genetics/doc/*.pdf

Added: trunk/packages/R/r-cran-genetics/trunk/debian/source/format
===================================================================
--- trunk/packages/R/r-cran-genetics/trunk/debian/source/format	                        (rev 0)
+++ trunk/packages/R/r-cran-genetics/trunk/debian/source/format	2011-01-24 16:51:18 UTC (rev 5697)
@@ -0,0 +1 @@
+3.0 (quilt)