[med-svn] r5739 - in trunk/packages: . abyss abyss/trunk abyss/trunk/debian abyss/trunk/debian/source
Steffen Möller
moeller at alioth.debian.org
Sat Jan 29 15:05:29 UTC 2011
Author: moeller
Date: 2011-01-29 15:05:25 +0000 (Sat, 29 Jan 2011)
New Revision: 5739
Added:
trunk/packages/abyss/
trunk/packages/abyss/trunk/
trunk/packages/abyss/trunk/debian/
trunk/packages/abyss/trunk/debian/README.Debian
trunk/packages/abyss/trunk/debian/README.source
trunk/packages/abyss/trunk/debian/changelog
trunk/packages/abyss/trunk/debian/compat
trunk/packages/abyss/trunk/debian/control
trunk/packages/abyss/trunk/debian/copyright
trunk/packages/abyss/trunk/debian/docs
trunk/packages/abyss/trunk/debian/manpages
trunk/packages/abyss/trunk/debian/rules
trunk/packages/abyss/trunk/debian/source/
trunk/packages/abyss/trunk/debian/source/format
trunk/packages/abyss/trunk/debian/watch
Log:
Packaging with William of Abyss.
The license does not allow a redistribution
of the (working) binary.
Added: trunk/packages/abyss/trunk/debian/README.Debian
===================================================================
--- trunk/packages/abyss/trunk/debian/README.Debian (rev 0)
+++ trunk/packages/abyss/trunk/debian/README.Debian 2011-01-29 15:05:25 UTC (rev 5739)
@@ -0,0 +1,8 @@
+abyss for Debian
+----------------
+
+The package seems to be fine, technically,
+just the license does not allow the redistribution through
+our hands.
+
+ -- William Spooner <whs at eaglegenomics.com> Sat, 29 Jan 2011 15:44:51 +0100
Added: trunk/packages/abyss/trunk/debian/README.source
===================================================================
--- trunk/packages/abyss/trunk/debian/README.source (rev 0)
+++ trunk/packages/abyss/trunk/debian/README.source 2011-01-29 15:05:25 UTC (rev 5739)
@@ -0,0 +1,7 @@
+abyss for Debian
+----------------
+
+Nothing has yet been changed, but the upstream distribution
+is redundant with kalign, dialign and most likely also
+other Debian packages.
+
Added: trunk/packages/abyss/trunk/debian/changelog
===================================================================
--- trunk/packages/abyss/trunk/debian/changelog (rev 0)
+++ trunk/packages/abyss/trunk/debian/changelog 2011-01-29 15:05:25 UTC (rev 5739)
@@ -0,0 +1,5 @@
+abyss (1.2.5-1) unstable; urgency=low
+
+ * Initial release (Closes: #nnnn).
+
+ -- William Spooner <whs at eaglegenomics.com> Sat, 29 Jan 2011 15:44:51 +0100
Added: trunk/packages/abyss/trunk/debian/compat
===================================================================
--- trunk/packages/abyss/trunk/debian/compat (rev 0)
+++ trunk/packages/abyss/trunk/debian/compat 2011-01-29 15:05:25 UTC (rev 5739)
@@ -0,0 +1 @@
+7
Added: trunk/packages/abyss/trunk/debian/control
===================================================================
--- trunk/packages/abyss/trunk/debian/control (rev 0)
+++ trunk/packages/abyss/trunk/debian/control 2011-01-29 15:05:25 UTC (rev 5739)
@@ -0,0 +1,15 @@
+Source: abyss
+Section: non-free/science
+Priority: extra
+Maintainer: William Spooner <whs at eaglegenomics.com>
+Build-Depends: debhelper (>= 7.0.50~), autotools-dev
+Standards-Version: 3.9.1
+Homepage: http://www.bcgsc.ca/platform/bioinfo/software/abyss
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/abyss
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/abyss
+
+Package: abyss
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: De novo, parallel, paired-end genomic sequence assembler
+ Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
Added: trunk/packages/abyss/trunk/debian/copyright
===================================================================
--- trunk/packages/abyss/trunk/debian/copyright (rev 0)
+++ trunk/packages/abyss/trunk/debian/copyright 2011-01-29 15:05:25 UTC (rev 5739)
@@ -0,0 +1,36 @@
+Format: http://dep.debian.net/deps/dep5
+Upstream-Name: abyss
+Source: <url://example.com>
+
+Files: *
+Copyright: <years> <put author's name and email here>
+ <years> <likewise for another author>
+License: <special license>
+ <Put the license of the package here indented by 1 space>
+ <This follows the format of Description: lines in control file>
+ .
+ <Including paragraphs>
+
+# If you want to use GPL v2 or later for the /debian/* files use
+# the following clauses, or change it to suit. Delete these two lines
+Files: debian/*
+Copyright: 2011 Steffen Moeller <whs at eaglegenomics.com>
+License: GPL-2+
+ This package is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>
+ .
+ On Debian systems, the complete text of the GNU General
+ Public License version 2 can be found in "/usr/share/common-licenses/GPL-2".
+
+# Please also look if there are files or directories which have a
+# different copyright/license attached and list them here.
Added: trunk/packages/abyss/trunk/debian/docs
===================================================================
--- trunk/packages/abyss/trunk/debian/docs (rev 0)
+++ trunk/packages/abyss/trunk/debian/docs 2011-01-29 15:05:25 UTC (rev 5739)
@@ -0,0 +1 @@
+README
Added: trunk/packages/abyss/trunk/debian/manpages
===================================================================
--- trunk/packages/abyss/trunk/debian/manpages (rev 0)
+++ trunk/packages/abyss/trunk/debian/manpages 2011-01-29 15:05:25 UTC (rev 5739)
@@ -0,0 +1,3 @@
+./doc/abyss-pe.1
+./doc/ABYSS.1
+./doc/abyss-tofastq.1
Added: trunk/packages/abyss/trunk/debian/rules
===================================================================
--- trunk/packages/abyss/trunk/debian/rules (rev 0)
+++ trunk/packages/abyss/trunk/debian/rules 2011-01-29 15:05:25 UTC (rev 5739)
@@ -0,0 +1,13 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+# Sample debian/rules that uses debhelper.
+# This file was originally written by Joey Hess and Craig Small.
+# As a special exception, when this file is copied by dh-make into a
+# dh-make output file, you may use that output file without restriction.
+# This special exception was added by Craig Small in version 0.37 of dh-make.
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+%:
+ dh $@
Property changes on: trunk/packages/abyss/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/abyss/trunk/debian/source/format
===================================================================
--- trunk/packages/abyss/trunk/debian/source/format (rev 0)
+++ trunk/packages/abyss/trunk/debian/source/format 2011-01-29 15:05:25 UTC (rev 5739)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/abyss/trunk/debian/watch
===================================================================
--- trunk/packages/abyss/trunk/debian/watch (rev 0)
+++ trunk/packages/abyss/trunk/debian/watch 2011-01-29 15:05:25 UTC (rev 5739)
@@ -0,0 +1,2 @@
+version=3
+http://www.bcgsc.ca/downloads/abyss/abyss-([0-9.]*)\.tar\.gz
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