[med-svn] r5746 - trunk/packages/vienna-rna/trunk/debian

[Alexandre Mestiashvili]

Author: malex-guest
Date: 2011-01-29 16:24:25 +0000 (Sat, 29 Jan 2011)
New Revision: 5746

Modified:
   trunk/packages/vienna-rna/trunk/debian/control
   trunk/packages/vienna-rna/trunk/debian/rules
Log:
fixing lintian warnings and errors.


Modified: trunk/packages/vienna-rna/trunk/debian/control
===================================================================
--- trunk/packages/vienna-rna/trunk/debian/control	2011-01-29 16:17:39 UTC (rev 5745)
+++ trunk/packages/vienna-rna/trunk/debian/control	2011-01-29 16:24:25 UTC (rev 5746)
@@ -4,7 +4,7 @@
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Alex Mestiashvili <alex at biotec.tu-dresden.de>
 DM-Upload-Allowed: yes
-Build-Depends: debhelper (>= 7), autotools-dev, quilt
+Build-Depends: debhelper (>= 7), autotools-dev, quilt, tcsh | csh | c-shel, libg2-dev
 Standards-Version: 3.9.1
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/vienna-rna/trunk/?rev=0&sc=0
 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/vienna-rna/trunk/
@@ -35,6 +35,23 @@
 
 Package: vienna-rna-doc
 Architecture: all
-Description: Documentation for vienna-rna
+Description: RNA sequence analysis
+ The Vienna RNA Package consists of a C code library and several
+ stand-alone programs for the prediction and comparison of RNA secondary
+ structures. It is developed and maintained by the group of Ivo Hofacker
+ in Vienna.
+ .
+ RNA secondary structure prediction through energy minimization is the
+ most used function in the package. We provide three kinds of dynamic
+ programming algorithms for structure prediction: the minimum free energy
+ algorithm of (Zuker & Stiegler 1981) which yields a single optimal
+ structure, the partition function algorithm of (McCaskill 1990) which
+ calculates base pair probabilities in the thermodynamic ensemble, and
+ the suboptimal folding algorithm of (Wuchty et.al 1999) which generates
+ all suboptimal structures within a given energy range of the optimal
+ energy. For secondary structure comparison, the package contains several
+ measures of distance (dissimilarities) using either string alignment or
+ tree-editing (Shapiro & Zhang 1990). Finally, we provide an algorithm
+ to design sequences with a predefined structure (inverse folding).
  
 

Modified: trunk/packages/vienna-rna/trunk/debian/rules
===================================================================
--- trunk/packages/vienna-rna/trunk/debian/rules	2011-01-29 16:17:39 UTC (rev 5745)
+++ trunk/packages/vienna-rna/trunk/debian/rules	2011-01-29 16:24:25 UTC (rev 5746)
@@ -63,6 +63,10 @@
 	dh_testdir
 	dh_testroot
 	rm -f build-arch-stamp build-indep-stamp 
+	# libg2-dev is standalone package
+	rm -rf RNAforester/g2-0.70
+        # readseq is standalone package 	
+	rm -rf Readseq 
 
 	# Add here commands to clean up after the build process.
 	[ ! -f Makefile ] || $(MAKE) distclean
@@ -121,7 +125,7 @@
 	dh_strip
 	dh_compress
 	dh_fixperms
-#	dh_perl
+	dh_perl
 	dh_makeshlibs
 	dh_installdeb
 	dh_shlibdeps