[med-svn] r5824 - trunk/packages/bowtie/trunk/debian

[Andreas Tille]

Author: tille
Date: 2011-01-30 14:26:33 +0000 (Sun, 30 Jan 2011)
New Revision: 5824

Added:
   trunk/packages/bowtie/trunk/debian/doc-base
Modified:
   trunk/packages/bowtie/trunk/debian/bowtie-build.1
   trunk/packages/bowtie/trunk/debian/control
Log:
added doc-base control file


Modified: trunk/packages/bowtie/trunk/debian/bowtie-build.1
===================================================================
--- trunk/packages/bowtie/trunk/debian/bowtie-build.1	2011-01-30 14:02:47 UTC (rev 5823)
+++ trunk/packages/bowtie/trunk/debian/bowtie-build.1	2011-01-30 14:26:33 UTC (rev 5824)
@@ -1,7 +1,7 @@
 .\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.38.2.
 .TH BOWTIE-BUILD "1" "November 2010" "bowtie-build version 0.12.7" "User Commands"
 .SH NAME
-bowtie-build \- manual page for bowtie-build version 0.12.7
+bowtie-build - manual page for bowtie-build version 0.12.7
 .SH SYNOPSIS
 .B bowtie-build
 [\fIoptions\fR]\fI* <reference_in> <ebwt_outfile_base>\fR

Modified: trunk/packages/bowtie/trunk/debian/control
===================================================================
--- trunk/packages/bowtie/trunk/debian/control	2011-01-30 14:02:47 UTC (rev 5823)
+++ trunk/packages/bowtie/trunk/debian/control	2011-01-30 14:26:33 UTC (rev 5824)
@@ -30,7 +30,7 @@
 
 Package: bowtie-examples
 Architecture: all
-Depends: ${shlibs:Depends}, ${misc:Depends}
+Depends: ${misc:Depends}
 Recommends: bowtie
 Enhances: bowtie
 Description: Examples for bowtie, the ultrafast memory-efficient short read aligner

Added: trunk/packages/bowtie/trunk/debian/doc-base
===================================================================
--- trunk/packages/bowtie/trunk/debian/doc-base	                        (rev 0)
+++ trunk/packages/bowtie/trunk/debian/doc-base	2011-01-30 14:26:33 UTC (rev 5824)
@@ -0,0 +1,19 @@
+Document: bowtie
+Title: Manual for bowtie
+Author:  Ben Langmead
+Abstract: ultrafast memory-efficient short read aligner
+ Bowtie is an ultrafast, memory-efficient short read aligner geared toward
+ quickly aligning large sets of short DNA sequences (reads) to large genomes. It
+ aligns 35-base-pair reads to the human genome at a rate of 25 million reads per
+ hour on a typical workstation. Bowtie indexes the genome with a Burrows-Wheeler
+ index to keep its memory footprint small: for the human genome, the index is
+ typically about 2.2 GB (for unpaired alignment) or 2.9 GB (for paired-end or
+ colorspace alignment). Multiple processors can be used simultaneously to
+ achieve greater alignment speed. Bowtie can also output alignments in the
+ standard SAM format, allowing Bowtie to interoperate with other tools
+ supporting SAM, including the SAMtools consensus, SNP, and indel callers.
+Section: Science/Biology
+
+Format: html
+Files: /usr/share/doc/bowtie/manual.html
+Index: /usr/share/doc/bowtie/manual.html