[med-svn] r5830 - in trunk/packages/vienna-rna/trunk/debian: . patches

Alexandre Mestiashvili malex-guest at alioth.debian.org
Sun Jan 30 18:02:38 UTC 2011 

Author: malex-guest
Date: 2011-01-30 18:02:25 +0000 (Sun, 30 Jan 2011)
New Revision: 5830

Added:
   trunk/packages/vienna-rna/trunk/debian/patches/debian-changes-1.8.4-1
Modified:
   trunk/packages/vienna-rna/trunk/debian/patches/fix_RNAlib_info.patch
   trunk/packages/vienna-rna/trunk/debian/rules
Log:


Added: trunk/packages/vienna-rna/trunk/debian/patches/debian-changes-1.8.4-1
===================================================================
--- trunk/packages/vienna-rna/trunk/debian/patches/debian-changes-1.8.4-1	                        (rev 0)
+++ trunk/packages/vienna-rna/trunk/debian/patches/debian-changes-1.8.4-1	2011-01-30 18:02:25 UTC (rev 5830)
@@ -0,0 +1,966 @@
+Description: Upstream changes introduced in version 1.8.4-1
+ This patch has been created by dpkg-source during the package build.
+ Here's the last changelog entry, hopefully it gives details on why
+ those changes were made:
+ .
+ vienna-rna (1.8.4-1) unstable; urgency=low
+ .
+   * Initial release (Closes: #451193)
+ .
+ The person named in the Author field signed this changelog entry.
+Author: Alex Mestiashvili <alex at biotec.tu-dresden.de>
+Bug-Debian: http://bugs.debian.org/451193
+
+---
+The information above should follow the Patch Tagging Guidelines, please
+checkout http://dep.debian.net/deps/dep3/ to learn about the format. Here
+are templates for supplementary fields that you might want to add:
+
+Origin: <vendor|upstream|other>, <url of original patch>
+Bug: <url in upstream bugtracker>
+Bug-Debian: http://bugs.debian.org/<bugnumber>
+Bug-Ubuntu: https://launchpad.net/bugs/<bugnumber>
+Forwarded: <no|not-needed|url proving that it has been forwarded>
+Reviewed-By: <name and email of someone who approved the patch>
+Last-Update: <YYYY-MM-DD>
+
+--- /dev/null
++++ vienna-rna-1.8.4/Perl/Makefile.perl.old
+@@ -0,0 +1,937 @@
++# This Makefile is for the RNA extension to perl.
++#
++# It was generated automatically by MakeMaker version
++# 6.55_02 (Revision: 65502) from the contents of
++# Makefile.PL. Don't edit this file, edit Makefile.PL instead.
++#
++#       ANY CHANGES MADE HERE WILL BE LOST!
++#
++#   MakeMaker ARGV: ()
++#
++
++#   MakeMaker Parameters:
++
++#     AUTHOR => q[Ivo Hofacker <ivo at tbi.univie.ac.at>]
++#     BUILD_REQUIRES => {  }
++#     INSTALLDIRS => q[vendor]
++#     LIBS => [q[-lm]]
++#     MAKEFILE => q[Makefile.perl]
++#     MYEXTLIB => q[../lib/libRNA.a]
++#     NAME => q[RNA]
++#     OBJECT => q[RNA_wrap.o]
++#     PM => { RNA.pm=>q[$(INST_LIBDIR)/RNA.pm] }
++#     PREREQ_PM => {  }
++#     VERSION => q[0.2]
++
++# --- MakeMaker post_initialize section:
++
++
++# --- MakeMaker const_config section:
++
++# These definitions are from config.sh (via /usr/lib/perl/5.10/Config.pm).
++# They may have been overridden via Makefile.PL or on the command line.
++AR = ar
++CC = cc
++CCCDLFLAGS = -fPIC
++CCDLFLAGS = -Wl,-E
++DLEXT = so
++DLSRC = dl_dlopen.xs
++EXE_EXT = 
++FULL_AR = /usr/bin/ar
++LD = cc
++LDDLFLAGS = -shared -O2 -g -L/usr/local/lib -fstack-protector
++LDFLAGS =  -fstack-protector -L/usr/local/lib
++LIBC = /lib/libc-2.11.2.so
++LIB_EXT = .a
++OBJ_EXT = .o
++OSNAME = linux
++OSVERS = 2.6.32.27-dsa-ia32
++RANLIB = :
++SITELIBEXP = /usr/local/share/perl/5.10.1
++SITEARCHEXP = /usr/local/lib/perl/5.10.1
++SO = so
++VENDORARCHEXP = /usr/lib/perl5
++VENDORLIBEXP = /usr/share/perl5
++
++
++# --- MakeMaker constants section:
++AR_STATIC_ARGS = cr
++DIRFILESEP = /
++DFSEP = $(DIRFILESEP)
++NAME = RNA
++NAME_SYM = RNA
++VERSION = 0.2
++VERSION_MACRO = VERSION
++VERSION_SYM = 0_2
++DEFINE_VERSION = -D$(VERSION_MACRO)=\"$(VERSION)\"
++XS_VERSION = 0.2
++XS_VERSION_MACRO = XS_VERSION
++XS_DEFINE_VERSION = -D$(XS_VERSION_MACRO)=\"$(XS_VERSION)\"
++INST_ARCHLIB = blib/arch
++INST_SCRIPT = blib/script
++INST_BIN = blib/bin
++INST_LIB = blib/lib
++INST_MAN1DIR = blib/man1
++INST_MAN3DIR = blib/man3
++MAN1EXT = 1p
++MAN3EXT = 3pm
++INSTALLDIRS = vendor
++DESTDIR = 
++PREFIX = /usr
++PERLPREFIX = $(PREFIX)
++SITEPREFIX = $(PREFIX)/local
++VENDORPREFIX = $(PREFIX)
++INSTALLPRIVLIB = $(PERLPREFIX)/share/perl/5.10
++DESTINSTALLPRIVLIB = $(DESTDIR)$(INSTALLPRIVLIB)
++INSTALLSITELIB = $(SITEPREFIX)/share/perl/5.10.1
++DESTINSTALLSITELIB = $(DESTDIR)$(INSTALLSITELIB)
++INSTALLVENDORLIB = $(VENDORPREFIX)/share/perl5
++DESTINSTALLVENDORLIB = $(DESTDIR)$(INSTALLVENDORLIB)
++INSTALLARCHLIB = $(PERLPREFIX)/lib/perl/5.10
++DESTINSTALLARCHLIB = $(DESTDIR)$(INSTALLARCHLIB)
++INSTALLSITEARCH = $(SITEPREFIX)/lib/perl/5.10.1
++DESTINSTALLSITEARCH = $(DESTDIR)$(INSTALLSITEARCH)
++INSTALLVENDORARCH = $(VENDORPREFIX)/lib/perl5
++DESTINSTALLVENDORARCH = $(DESTDIR)$(INSTALLVENDORARCH)
++INSTALLBIN = $(PERLPREFIX)/bin
++DESTINSTALLBIN = $(DESTDIR)$(INSTALLBIN)
++INSTALLSITEBIN = $(SITEPREFIX)/bin
++DESTINSTALLSITEBIN = $(DESTDIR)$(INSTALLSITEBIN)
++INSTALLVENDORBIN = $(VENDORPREFIX)/bin
++DESTINSTALLVENDORBIN = $(DESTDIR)$(INSTALLVENDORBIN)
++INSTALLSCRIPT = $(PERLPREFIX)/bin
++DESTINSTALLSCRIPT = $(DESTDIR)$(INSTALLSCRIPT)
++INSTALLSITESCRIPT = $(SITEPREFIX)/bin
++DESTINSTALLSITESCRIPT = $(DESTDIR)$(INSTALLSITESCRIPT)
++INSTALLVENDORSCRIPT = $(VENDORPREFIX)/bin
++DESTINSTALLVENDORSCRIPT = $(DESTDIR)$(INSTALLVENDORSCRIPT)
++INSTALLMAN1DIR = $(PERLPREFIX)/share/man/man1
++DESTINSTALLMAN1DIR = $(DESTDIR)$(INSTALLMAN1DIR)
++INSTALLSITEMAN1DIR = $(SITEPREFIX)/man/man1
++DESTINSTALLSITEMAN1DIR = $(DESTDIR)$(INSTALLSITEMAN1DIR)
++INSTALLVENDORMAN1DIR = $(VENDORPREFIX)/share/man/man1
++DESTINSTALLVENDORMAN1DIR = $(DESTDIR)$(INSTALLVENDORMAN1DIR)
++INSTALLMAN3DIR = $(PERLPREFIX)/share/man/man3
++DESTINSTALLMAN3DIR = $(DESTDIR)$(INSTALLMAN3DIR)
++INSTALLSITEMAN3DIR = $(SITEPREFIX)/man/man3
++DESTINSTALLSITEMAN3DIR = $(DESTDIR)$(INSTALLSITEMAN3DIR)
++INSTALLVENDORMAN3DIR = $(VENDORPREFIX)/share/man/man3
++DESTINSTALLVENDORMAN3DIR = $(DESTDIR)$(INSTALLVENDORMAN3DIR)
++PERL_LIB = /usr/share/perl/5.10
++PERL_ARCHLIB = /usr/lib/perl/5.10
++LIBPERL_A = libperl.a
++MYEXTLIB = ../lib/libRNA.a
++FIRST_MAKEFILE = Makefile.perl
++MAKEFILE_OLD = Makefile.perl.old
++MAKE_APERL_FILE = Makefile.perl.aperl
++PERLMAINCC = $(CC)
++PERL_INC = /usr/lib/perl/5.10/CORE
++PERL = /usr/bin/perl
++FULLPERL = /usr/bin/perl
++ABSPERL = $(PERL)
++PERLRUN = $(PERL)
++FULLPERLRUN = $(FULLPERL)
++ABSPERLRUN = $(ABSPERL)
++PERLRUNINST = $(PERLRUN) "-I$(INST_ARCHLIB)" "-I$(INST_LIB)"
++FULLPERLRUNINST = $(FULLPERLRUN) "-I$(INST_ARCHLIB)" "-I$(INST_LIB)"
++ABSPERLRUNINST = $(ABSPERLRUN) "-I$(INST_ARCHLIB)" "-I$(INST_LIB)"
++PERL_CORE = 0
++PERM_DIR = 755
++PERM_RW = 644
++PERM_RWX = 755
++
++MAKEMAKER   = /usr/share/perl/5.10/ExtUtils/MakeMaker.pm
++MM_VERSION  = 6.55_02
++MM_REVISION = 65502
++
++# FULLEXT = Pathname for extension directory (eg Foo/Bar/Oracle).
++# BASEEXT = Basename part of FULLEXT. May be just equal FULLEXT. (eg Oracle)
++# PARENT_NAME = NAME without BASEEXT and no trailing :: (eg Foo::Bar)
++# DLBASE  = Basename part of dynamic library. May be just equal BASEEXT.
++MAKE = make
++FULLEXT = RNA
++BASEEXT = RNA
++PARENT_NAME = 
++DLBASE = $(BASEEXT)
++VERSION_FROM = 
++OBJECT = RNA_wrap$(OBJ_EXT)
++LDFROM = $(OBJECT)
++LINKTYPE = dynamic
++BOOTDEP = 
++
++# Handy lists of source code files:
++XS_FILES = 
++C_FILES  = RNA_wrap.c
++O_FILES  = RNA_wrap.o
++H_FILES  = 
++MAN1PODS = 
++MAN3PODS = RNA.pm
++
++# Where is the Config information that we are using/depend on
++CONFIGDEP = $(PERL_ARCHLIB)$(DFSEP)Config.pm $(PERL_INC)$(DFSEP)config.h
++
++# Where to build things
++INST_LIBDIR      = $(INST_LIB)
++INST_ARCHLIBDIR  = $(INST_ARCHLIB)
++
++INST_AUTODIR     = $(INST_LIB)/auto/$(FULLEXT)
++INST_ARCHAUTODIR = $(INST_ARCHLIB)/auto/$(FULLEXT)
++
++INST_STATIC      = $(INST_ARCHAUTODIR)/$(BASEEXT)$(LIB_EXT)
++INST_DYNAMIC     = $(INST_ARCHAUTODIR)/$(DLBASE).$(DLEXT)
++INST_BOOT        = $(INST_ARCHAUTODIR)/$(BASEEXT).bs
++
++# Extra linker info
++EXPORT_LIST        = 
++PERL_ARCHIVE       = 
++PERL_ARCHIVE_AFTER = 
++
++
++TO_INST_PM = RNA.pm
++
++PM_TO_BLIB = RNA.pm \
++	$(INST_LIBDIR)/RNA.pm
++
++
++# --- MakeMaker platform_constants section:
++MM_Unix_VERSION = 6.55_02
++PERL_MALLOC_DEF = -DPERL_EXTMALLOC_DEF -Dmalloc=Perl_malloc -Dfree=Perl_mfree -Drealloc=Perl_realloc -Dcalloc=Perl_calloc
++
++
++# --- MakeMaker tool_autosplit section:
++# Usage: $(AUTOSPLITFILE) FileToSplit AutoDirToSplitInto
++AUTOSPLITFILE = $(ABSPERLRUN)  -e 'use AutoSplit;  autosplit($$ARGV[0], $$ARGV[1], 0, 1, 1)' --
++
++
++
++# --- MakeMaker tool_xsubpp section:
++
++XSUBPPDIR = /usr/share/perl/5.10/ExtUtils
++XSUBPP = $(XSUBPPDIR)$(DFSEP)xsubpp
++XSUBPPRUN = $(PERLRUN) $(XSUBPP)
++XSPROTOARG = 
++XSUBPPDEPS = /usr/share/perl/5.10/ExtUtils/typemap $(XSUBPP)
++XSUBPPARGS = -typemap /usr/share/perl/5.10/ExtUtils/typemap
++XSUBPP_EXTRA_ARGS = 
++
++
++# --- MakeMaker tools_other section:
++SHELL = /bin/sh
++CHMOD = chmod
++CP = cp
++MV = mv
++NOOP = $(TRUE)
++NOECHO = @
++RM_F = rm -f
++RM_RF = rm -rf
++TEST_F = test -f
++TOUCH = touch
++UMASK_NULL = umask 0
++DEV_NULL = > /dev/null 2>&1
++MKPATH = $(ABSPERLRUN) -MExtUtils::Command -e 'mkpath' --
++EQUALIZE_TIMESTAMP = $(ABSPERLRUN) -MExtUtils::Command -e 'eqtime' --
++FALSE = false
++TRUE = true
++ECHO = echo
++ECHO_N = echo -n
++UNINST = 0
++VERBINST = 0
++MOD_INSTALL = $(ABSPERLRUN) -MExtUtils::Install -e 'install([ from_to => {@ARGV}, verbose => '\''$(VERBINST)'\'', uninstall_shadows => '\''$(UNINST)'\'', dir_mode => '\''$(PERM_DIR)'\'' ]);' --
++DOC_INSTALL = $(ABSPERLRUN) -MExtUtils::Command::MM -e 'perllocal_install' --
++UNINSTALL = $(ABSPERLRUN) -MExtUtils::Command::MM -e 'uninstall' --
++WARN_IF_OLD_PACKLIST = $(ABSPERLRUN) -MExtUtils::Command::MM -e 'warn_if_old_packlist' --
++MACROSTART = 
++MACROEND = 
++USEMAKEFILE = -f
++FIXIN = $(ABSPERLRUN) -MExtUtils::MY -e 'MY->fixin(shift)' --
++
++
++# --- MakeMaker makemakerdflt section:
++makemakerdflt : all
++	$(NOECHO) $(NOOP)
++
++
++# --- MakeMaker dist section:
++TAR = tar
++TARFLAGS = cvf
++ZIP = zip
++ZIPFLAGS = -r
++COMPRESS = gzip --best
++SUFFIX = .gz
++SHAR = shar
++PREOP = $(NOECHO) $(NOOP)
++POSTOP = $(NOECHO) $(NOOP)
++TO_UNIX = $(NOECHO) $(NOOP)
++CI = ci -u
++RCS_LABEL = rcs -Nv$(VERSION_SYM): -q
++DIST_CP = best
++DIST_DEFAULT = tardist
++DISTNAME = RNA
++DISTVNAME = RNA-0.2
++
++
++# --- MakeMaker macro section:
++
++
++# --- MakeMaker depend section:
++
++
++# --- MakeMaker cflags section:
++
++CCFLAGS = -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64
++OPTIMIZE = -O2 -g
++PERLTYPE = 
++MPOLLUTE = 
++
++
++# --- MakeMaker const_loadlibs section:
++
++# RNA might depend on some other libraries:
++# See ExtUtils::Liblist for details
++#
++EXTRALIBS = 
++LDLOADLIBS = -lm
++BSLOADLIBS = 
++
++
++# --- MakeMaker const_cccmd section:
++CCCMD = $(CC) -c $(PASTHRU_INC) $(INC) \
++	$(CCFLAGS) $(OPTIMIZE) \
++	$(PERLTYPE) $(MPOLLUTE) $(DEFINE_VERSION) \
++	$(XS_DEFINE_VERSION)
++
++# --- MakeMaker post_constants section:
++
++
++# --- MakeMaker pasthru section:
++
++PASTHRU = LIBPERL_A="$(LIBPERL_A)"\
++	LINKTYPE="$(LINKTYPE)"\
++	OPTIMIZE="$(OPTIMIZE)"\
++	PREFIX="$(PREFIX)"
++
++
++# --- MakeMaker special_targets section:
++.SUFFIXES : .xs .c .C .cpp .i .s .cxx .cc $(OBJ_EXT)
++
++.PHONY: all config static dynamic test linkext manifest blibdirs clean realclean disttest distdir
++
++
++
++# --- MakeMaker c_o section:
++
++.c.i:
++	cc -E -c $(PASTHRU_INC) $(INC) \
++	$(CCFLAGS) $(OPTIMIZE) \
++	$(PERLTYPE) $(MPOLLUTE) $(DEFINE_VERSION) \
++	$(XS_DEFINE_VERSION) $(CCCDLFLAGS) "-I$(PERL_INC)" $(PASTHRU_DEFINE) $(DEFINE) $*.c > $*.i
++
++.c.s:
++	$(CCCMD) -S $(CCCDLFLAGS) "-I$(PERL_INC)" $(PASTHRU_DEFINE) $(DEFINE) $*.c
++
++.c$(OBJ_EXT):
++	$(CCCMD) $(CCCDLFLAGS) "-I$(PERL_INC)" $(PASTHRU_DEFINE) $(DEFINE) $*.c
++
++.cpp$(OBJ_EXT):
++	$(CCCMD) $(CCCDLFLAGS) "-I$(PERL_INC)" $(PASTHRU_DEFINE) $(DEFINE) $*.cpp
++
++.cxx$(OBJ_EXT):
++	$(CCCMD) $(CCCDLFLAGS) "-I$(PERL_INC)" $(PASTHRU_DEFINE) $(DEFINE) $*.cxx
++
++.cc$(OBJ_EXT):
++	$(CCCMD) $(CCCDLFLAGS) "-I$(PERL_INC)" $(PASTHRU_DEFINE) $(DEFINE) $*.cc
++
++.C$(OBJ_EXT):
++	$(CCCMD) $(CCCDLFLAGS) "-I$(PERL_INC)" $(PASTHRU_DEFINE) $(DEFINE) $*.C
++
++
++# --- MakeMaker xs_c section:
++
++.xs.c:
++	$(XSUBPPRUN) $(XSPROTOARG) $(XSUBPPARGS) $(XSUBPP_EXTRA_ARGS) $*.xs > $*.xsc && $(MV) $*.xsc $*.c
++
++
++# --- MakeMaker xs_o section:
++
++.xs$(OBJ_EXT):
++	$(XSUBPPRUN) $(XSPROTOARG) $(XSUBPPARGS) $*.xs > $*.xsc && $(MV) $*.xsc $*.c
++	$(CCCMD) $(CCCDLFLAGS) "-I$(PERL_INC)" $(PASTHRU_DEFINE) $(DEFINE) $*.c
++
++
++# --- MakeMaker top_targets section:
++all :: pure_all manifypods
++	$(NOECHO) $(NOOP)
++
++
++pure_all :: config pm_to_blib subdirs linkext
++	$(NOECHO) $(NOOP)
++
++subdirs :: $(MYEXTLIB)
++	$(NOECHO) $(NOOP)
++
++config :: $(FIRST_MAKEFILE) blibdirs
++	$(NOECHO) $(NOOP)
++
++help :
++	perldoc ExtUtils::MakeMaker
++
++
++# --- MakeMaker blibdirs section:
++blibdirs : $(INST_LIBDIR)$(DFSEP).exists $(INST_ARCHLIB)$(DFSEP).exists $(INST_AUTODIR)$(DFSEP).exists $(INST_ARCHAUTODIR)$(DFSEP).exists $(INST_BIN)$(DFSEP).exists $(INST_SCRIPT)$(DFSEP).exists $(INST_MAN1DIR)$(DFSEP).exists $(INST_MAN3DIR)$(DFSEP).exists
++	$(NOECHO) $(NOOP)
++
++# Backwards compat with 6.18 through 6.25
++blibdirs.ts : blibdirs
++	$(NOECHO) $(NOOP)
++
++$(INST_LIBDIR)$(DFSEP).exists :: Makefile.PL
++	$(NOECHO) $(MKPATH) $(INST_LIBDIR)
++	$(NOECHO) $(CHMOD) $(PERM_DIR) $(INST_LIBDIR)
++	$(NOECHO) $(TOUCH) $(INST_LIBDIR)$(DFSEP).exists
++
++$(INST_ARCHLIB)$(DFSEP).exists :: Makefile.PL
++	$(NOECHO) $(MKPATH) $(INST_ARCHLIB)
++	$(NOECHO) $(CHMOD) $(PERM_DIR) $(INST_ARCHLIB)
++	$(NOECHO) $(TOUCH) $(INST_ARCHLIB)$(DFSEP).exists
++
++$(INST_AUTODIR)$(DFSEP).exists :: Makefile.PL
++	$(NOECHO) $(MKPATH) $(INST_AUTODIR)
++	$(NOECHO) $(CHMOD) $(PERM_DIR) $(INST_AUTODIR)
++	$(NOECHO) $(TOUCH) $(INST_AUTODIR)$(DFSEP).exists
++
++$(INST_ARCHAUTODIR)$(DFSEP).exists :: Makefile.PL
++	$(NOECHO) $(MKPATH) $(INST_ARCHAUTODIR)
++	$(NOECHO) $(CHMOD) $(PERM_DIR) $(INST_ARCHAUTODIR)
++	$(NOECHO) $(TOUCH) $(INST_ARCHAUTODIR)$(DFSEP).exists
++
++$(INST_BIN)$(DFSEP).exists :: Makefile.PL
++	$(NOECHO) $(MKPATH) $(INST_BIN)
++	$(NOECHO) $(CHMOD) $(PERM_DIR) $(INST_BIN)
++	$(NOECHO) $(TOUCH) $(INST_BIN)$(DFSEP).exists
++
++$(INST_SCRIPT)$(DFSEP).exists :: Makefile.PL
++	$(NOECHO) $(MKPATH) $(INST_SCRIPT)
++	$(NOECHO) $(CHMOD) $(PERM_DIR) $(INST_SCRIPT)
++	$(NOECHO) $(TOUCH) $(INST_SCRIPT)$(DFSEP).exists
++
++$(INST_MAN1DIR)$(DFSEP).exists :: Makefile.PL
++	$(NOECHO) $(MKPATH) $(INST_MAN1DIR)
++	$(NOECHO) $(CHMOD) $(PERM_DIR) $(INST_MAN1DIR)
++	$(NOECHO) $(TOUCH) $(INST_MAN1DIR)$(DFSEP).exists
++
++$(INST_MAN3DIR)$(DFSEP).exists :: Makefile.PL
++	$(NOECHO) $(MKPATH) $(INST_MAN3DIR)
++	$(NOECHO) $(CHMOD) $(PERM_DIR) $(INST_MAN3DIR)
++	$(NOECHO) $(TOUCH) $(INST_MAN3DIR)$(DFSEP).exists
++
++
++
++# --- MakeMaker linkext section:
++
++linkext :: $(LINKTYPE)
++	$(NOECHO) $(NOOP)
++
++
++# --- MakeMaker dlsyms section:
++
++
++# --- MakeMaker dynamic section:
++
++dynamic :: $(FIRST_MAKEFILE) $(INST_DYNAMIC) $(INST_BOOT)
++	$(NOECHO) $(NOOP)
++
++
++# --- MakeMaker dynamic_bs section:
++BOOTSTRAP = $(BASEEXT).bs
++
++# As Mkbootstrap might not write a file (if none is required)
++# we use touch to prevent make continually trying to remake it.
++# The DynaLoader only reads a non-empty file.
++$(BOOTSTRAP) : $(FIRST_MAKEFILE) $(BOOTDEP) $(INST_ARCHAUTODIR)$(DFSEP).exists
++	$(NOECHO) $(ECHO) "Running Mkbootstrap for $(NAME) ($(BSLOADLIBS))"
++	$(NOECHO) $(PERLRUN) \
++		"-MExtUtils::Mkbootstrap" \
++		-e "Mkbootstrap('$(BASEEXT)','$(BSLOADLIBS)');"
++	$(NOECHO) $(TOUCH) $@
++	$(CHMOD) $(PERM_RW) $@
++
++$(INST_BOOT) : $(BOOTSTRAP) $(INST_ARCHAUTODIR)$(DFSEP).exists
++	$(NOECHO) $(RM_RF) $@
++	- $(CP) $(BOOTSTRAP) $@
++	$(CHMOD) $(PERM_RW) $@
++
++
++# --- MakeMaker dynamic_lib section:
++
++# This section creates the dynamically loadable $(INST_DYNAMIC)
++# from $(OBJECT) and possibly $(MYEXTLIB).
++ARMAYBE = :
++OTHERLDFLAGS = 
++INST_DYNAMIC_DEP = 
++INST_DYNAMIC_FIX = 
++
++$(INST_DYNAMIC): $(OBJECT) $(MYEXTLIB) $(BOOTSTRAP) $(INST_ARCHAUTODIR)$(DFSEP).exists $(EXPORT_LIST) $(PERL_ARCHIVE) $(PERL_ARCHIVE_AFTER) $(INST_DYNAMIC_DEP)
++	$(RM_F) $@
++	$(LD)  $(LDDLFLAGS) $(LDFROM) $(OTHERLDFLAGS) -o $@ $(MYEXTLIB)	\
++	  $(PERL_ARCHIVE) $(LDLOADLIBS) $(PERL_ARCHIVE_AFTER) $(EXPORT_LIST)	\
++	  $(INST_DYNAMIC_FIX)
++	$(CHMOD) $(PERM_RWX) $@
++
++
++# --- MakeMaker static section:
++
++## $(INST_PM) has been moved to the all: target.
++## It remains here for awhile to allow for old usage: "make static"
++static :: $(FIRST_MAKEFILE) $(INST_STATIC)
++	$(NOECHO) $(NOOP)
++
++
++# --- MakeMaker static_lib section:
++
++$(INST_STATIC) : $(OBJECT) $(MYEXTLIB) $(INST_ARCHAUTODIR)$(DFSEP).exists
++	$(RM_RF) $@
++	$(CP) $(MYEXTLIB) $@
++	$(FULL_AR) $(AR_STATIC_ARGS) $@ $(OBJECT) && $(RANLIB) $@
++	$(CHMOD) $(PERM_RWX) $@
++	$(NOECHO) $(ECHO) "$(EXTRALIBS)" > $(INST_ARCHAUTODIR)/extralibs.ld
++
++
++# --- MakeMaker manifypods section:
++
++POD2MAN_EXE = $(PERLRUN) "-MExtUtils::Command::MM" -e pod2man "--"
++POD2MAN = $(POD2MAN_EXE)
++
++
++manifypods : pure_all  \
++	RNA.pm
++	$(NOECHO) $(POD2MAN) --section=$(MAN3EXT) --perm_rw=$(PERM_RW) \
++	  RNA.pm $(INST_MAN3DIR)/RNA.$(MAN3EXT) 
++
++
++
++
++# --- MakeMaker processPL section:
++
++
++# --- MakeMaker installbin section:
++
++
++# --- MakeMaker subdirs section:
++
++# none
++
++# --- MakeMaker clean_subdirs section:
++clean_subdirs :
++	$(NOECHO) $(NOOP)
++
++
++# --- MakeMaker clean section:
++
++# Delete temporary files but do not touch installed files. We don't delete
++# the Makefile here so a later make realclean still has a makefile to use.
++
++clean :: clean_subdirs
++	- $(RM_F) \
++	  *$(LIB_EXT) core \
++	  core.[0-9] $(INST_ARCHAUTODIR)/extralibs.all \
++	  core.[0-9][0-9] $(BASEEXT).bso \
++	  pm_to_blib.ts core.[0-9][0-9][0-9][0-9] \
++	  $(BASEEXT).x $(BOOTSTRAP) \
++	  perl$(EXE_EXT) tmon.out \
++	  *$(OBJ_EXT) pm_to_blib \
++	  $(INST_ARCHAUTODIR)/extralibs.ld blibdirs.ts \
++	  core.[0-9][0-9][0-9][0-9][0-9] *perl.core \
++	  core.*perl.*.? $(MAKE_APERL_FILE) \
++	  perl $(BASEEXT).def \
++	  core.[0-9][0-9][0-9] mon.out \
++	  lib$(BASEEXT).def perlmain.c \
++	  perl.exe so_locations \
++	  $(BASEEXT).exp 
++	- $(RM_RF) \
++	  blib 
++	- $(MV) $(FIRST_MAKEFILE) $(MAKEFILE_OLD) $(DEV_NULL)
++
++
++# --- MakeMaker realclean_subdirs section:
++realclean_subdirs :
++	$(NOECHO) $(NOOP)
++
++
++# --- MakeMaker realclean section:
++# Delete temporary files (via clean) and also delete dist files
++realclean purge ::  clean realclean_subdirs
++	- $(RM_F) \
++	  $(OBJECT) $(MAKEFILE_OLD) \
++	  $(FIRST_MAKEFILE) 
++	- $(RM_RF) \
++	  $(DISTVNAME) 
++
++
++# --- MakeMaker metafile section:
++metafile : create_distdir
++	$(NOECHO) $(ECHO) Generating META.yml
++	$(NOECHO) $(ECHO) '--- #YAML:1.0' > META_new.yml
++	$(NOECHO) $(ECHO) 'name:               RNA' >> META_new.yml
++	$(NOECHO) $(ECHO) 'version:            0.2' >> META_new.yml
++	$(NOECHO) $(ECHO) 'abstract:           ~' >> META_new.yml
++	$(NOECHO) $(ECHO) 'author:' >> META_new.yml
++	$(NOECHO) $(ECHO) '    - Ivo Hofacker <ivo at tbi.univie.ac.at>' >> META_new.yml
++	$(NOECHO) $(ECHO) 'license:            unknown' >> META_new.yml
++	$(NOECHO) $(ECHO) 'distribution_type:  module' >> META_new.yml
++	$(NOECHO) $(ECHO) 'configure_requires:' >> META_new.yml
++	$(NOECHO) $(ECHO) '    ExtUtils::MakeMaker:  0' >> META_new.yml
++	$(NOECHO) $(ECHO) 'build_requires:' >> META_new.yml
++	$(NOECHO) $(ECHO) '    ExtUtils::MakeMaker:  0' >> META_new.yml
++	$(NOECHO) $(ECHO) 'requires:  {}' >> META_new.yml
++	$(NOECHO) $(ECHO) 'no_index:' >> META_new.yml
++	$(NOECHO) $(ECHO) '    directory:' >> META_new.yml
++	$(NOECHO) $(ECHO) '        - t' >> META_new.yml
++	$(NOECHO) $(ECHO) '        - inc' >> META_new.yml
++	$(NOECHO) $(ECHO) 'generated_by:       ExtUtils::MakeMaker version 6.55_02' >> META_new.yml
++	$(NOECHO) $(ECHO) 'meta-spec:' >> META_new.yml
++	$(NOECHO) $(ECHO) '    url:      http://module-build.sourceforge.net/META-spec-v1.4.html' >> META_new.yml
++	$(NOECHO) $(ECHO) '    version:  1.4' >> META_new.yml
++	-$(NOECHO) $(MV) META_new.yml $(DISTVNAME)/META.yml
++
++
++# --- MakeMaker signature section:
++signature :
++	cpansign -s
++
++
++# --- MakeMaker dist_basics section:
++distclean :: realclean distcheck
++	$(NOECHO) $(NOOP)
++
++distcheck :
++	$(PERLRUN) "-MExtUtils::Manifest=fullcheck" -e fullcheck
++
++skipcheck :
++	$(PERLRUN) "-MExtUtils::Manifest=skipcheck" -e skipcheck
++
++manifest :
++	$(PERLRUN) "-MExtUtils::Manifest=mkmanifest" -e mkmanifest
++
++veryclean : realclean
++	$(RM_F) *~ */*~ *.orig */*.orig *.bak */*.bak *.old */*.old 
++
++
++
++# --- MakeMaker dist_core section:
++
++dist : $(DIST_DEFAULT) $(FIRST_MAKEFILE)
++	$(NOECHO) $(ABSPERLRUN) -l -e 'print '\''Warning: Makefile possibly out of date with $(VERSION_FROM)'\''' \
++	  -e '    if -e '\''$(VERSION_FROM)'\'' and -M '\''$(VERSION_FROM)'\'' < -M '\''$(FIRST_MAKEFILE)'\'';' --
++
++tardist : $(DISTVNAME).tar$(SUFFIX)
++	$(NOECHO) $(NOOP)
++
++uutardist : $(DISTVNAME).tar$(SUFFIX)
++	uuencode $(DISTVNAME).tar$(SUFFIX) $(DISTVNAME).tar$(SUFFIX) > $(DISTVNAME).tar$(SUFFIX)_uu
++
++$(DISTVNAME).tar$(SUFFIX) : distdir
++	$(PREOP)
++	$(TO_UNIX)
++	$(TAR) $(TARFLAGS) $(DISTVNAME).tar $(DISTVNAME)
++	$(RM_RF) $(DISTVNAME)
++	$(COMPRESS) $(DISTVNAME).tar
++	$(POSTOP)
++
++zipdist : $(DISTVNAME).zip
++	$(NOECHO) $(NOOP)
++
++$(DISTVNAME).zip : distdir
++	$(PREOP)
++	$(ZIP) $(ZIPFLAGS) $(DISTVNAME).zip $(DISTVNAME)
++	$(RM_RF) $(DISTVNAME)
++	$(POSTOP)
++
++shdist : distdir
++	$(PREOP)
++	$(SHAR) $(DISTVNAME) > $(DISTVNAME).shar
++	$(RM_RF) $(DISTVNAME)
++	$(POSTOP)
++
++
++# --- MakeMaker distdir section:
++create_distdir :
++	$(RM_RF) $(DISTVNAME)
++	$(PERLRUN) "-MExtUtils::Manifest=manicopy,maniread" \
++		-e "manicopy(maniread(),'$(DISTVNAME)', '$(DIST_CP)');"
++
++distdir : create_distdir distmeta 
++	$(NOECHO) $(NOOP)
++
++
++
++# --- MakeMaker dist_test section:
++disttest : distdir
++	cd $(DISTVNAME) && $(ABSPERLRUN) Makefile.PL 
++	cd $(DISTVNAME) && $(MAKE) $(PASTHRU)
++	cd $(DISTVNAME) && $(MAKE) test $(PASTHRU)
++
++
++
++# --- MakeMaker dist_ci section:
++
++ci :
++	$(PERLRUN) "-MExtUtils::Manifest=maniread" \
++	  -e "@all = keys %{ maniread() };" \
++	  -e "print(qq{Executing $(CI) @all\n}); system(qq{$(CI) @all});" \
++	  -e "print(qq{Executing $(RCS_LABEL) ...\n}); system(qq{$(RCS_LABEL) @all});"
++
++
++# --- MakeMaker distmeta section:
++distmeta : create_distdir metafile
++	$(NOECHO) cd $(DISTVNAME) && $(ABSPERLRUN) -MExtUtils::Manifest=maniadd -e 'eval { maniadd({q{META.yml} => q{Module meta-data (added by MakeMaker)}}) } ' \
++	  -e '    or print "Could not add META.yml to MANIFEST: $${'\''@'\''}\n"' --
++
++
++
++# --- MakeMaker distsignature section:
++distsignature : create_distdir
++	$(NOECHO) cd $(DISTVNAME) && $(ABSPERLRUN) -MExtUtils::Manifest=maniadd -e 'eval { maniadd({q{SIGNATURE} => q{Public-key signature (added by MakeMaker)}}) } ' \
++	  -e '    or print "Could not add SIGNATURE to MANIFEST: $${'\''@'\''}\n"' --
++	$(NOECHO) cd $(DISTVNAME) && $(TOUCH) SIGNATURE
++	cd $(DISTVNAME) && cpansign -s
++
++
++
++# --- MakeMaker install section:
++
++install :: pure_install doc_install
++	$(NOECHO) $(NOOP)
++
++install_perl :: pure_perl_install doc_perl_install
++	$(NOECHO) $(NOOP)
++
++install_site :: pure_site_install doc_site_install
++	$(NOECHO) $(NOOP)
++
++install_vendor :: pure_vendor_install doc_vendor_install
++	$(NOECHO) $(NOOP)
++
++pure_install :: pure_$(INSTALLDIRS)_install
++	$(NOECHO) $(NOOP)
++
++doc_install :: doc_$(INSTALLDIRS)_install
++	$(NOECHO) $(NOOP)
++
++pure__install : pure_site_install
++	$(NOECHO) $(ECHO) INSTALLDIRS not defined, defaulting to INSTALLDIRS=site
++
++doc__install : doc_site_install
++	$(NOECHO) $(ECHO) INSTALLDIRS not defined, defaulting to INSTALLDIRS=site
++
++pure_perl_install :: all
++	$(NOECHO) umask 022; $(MOD_INSTALL) \
++		$(INST_LIB) $(DESTINSTALLPRIVLIB) \
++		$(INST_ARCHLIB) $(DESTINSTALLARCHLIB) \
++		$(INST_BIN) $(DESTINSTALLBIN) \
++		$(INST_SCRIPT) $(DESTINSTALLSCRIPT) \
++		$(INST_MAN1DIR) $(DESTINSTALLMAN1DIR) \
++		$(INST_MAN3DIR) $(DESTINSTALLMAN3DIR)
++	$(NOECHO) $(WARN_IF_OLD_PACKLIST) \
++		$(SITEARCHEXP)/auto/$(FULLEXT)
++
++
++pure_site_install :: all
++	$(NOECHO) umask 02; $(MOD_INSTALL) \
++		read $(SITEARCHEXP)/auto/$(FULLEXT)/.packlist \
++		write $(DESTINSTALLSITEARCH)/auto/$(FULLEXT)/.packlist \
++		$(INST_LIB) $(DESTINSTALLSITELIB) \
++		$(INST_ARCHLIB) $(DESTINSTALLSITEARCH) \
++		$(INST_BIN) $(DESTINSTALLSITEBIN) \
++		$(INST_SCRIPT) $(DESTINSTALLSITESCRIPT) \
++		$(INST_MAN1DIR) $(DESTINSTALLSITEMAN1DIR) \
++		$(INST_MAN3DIR) $(DESTINSTALLSITEMAN3DIR)
++	$(NOECHO) $(WARN_IF_OLD_PACKLIST) \
++		$(PERL_ARCHLIB)/auto/$(FULLEXT)
++
++pure_vendor_install :: all
++	$(NOECHO) umask 022; $(MOD_INSTALL) \
++		$(INST_LIB) $(DESTINSTALLVENDORLIB) \
++		$(INST_ARCHLIB) $(DESTINSTALLVENDORARCH) \
++		$(INST_BIN) $(DESTINSTALLVENDORBIN) \
++		$(INST_SCRIPT) $(DESTINSTALLVENDORSCRIPT) \
++		$(INST_MAN1DIR) $(DESTINSTALLVENDORMAN1DIR) \
++		$(INST_MAN3DIR) $(DESTINSTALLVENDORMAN3DIR)
++
++doc_perl_install :: all
++
++doc_site_install :: all
++	$(NOECHO) $(ECHO) Appending installation info to $(DESTINSTALLSITEARCH)/perllocal.pod
++	-$(NOECHO) umask 02; $(MKPATH) $(DESTINSTALLSITEARCH)
++	-$(NOECHO) umask 02; $(DOC_INSTALL) \
++		"Module" "$(NAME)" \
++		"installed into" "$(INSTALLSITELIB)" \
++		LINKTYPE "$(LINKTYPE)" \
++		VERSION "$(VERSION)" \
++		EXE_FILES "$(EXE_FILES)" \
++		>> $(DESTINSTALLSITEARCH)/perllocal.pod
++
++doc_vendor_install :: all
++
++
++uninstall :: uninstall_from_$(INSTALLDIRS)dirs
++	$(NOECHO) $(NOOP)
++
++uninstall_from_perldirs ::
++
++uninstall_from_sitedirs ::
++	$(NOECHO) $(UNINSTALL) $(SITEARCHEXP)/auto/$(FULLEXT)/.packlist
++
++uninstall_from_vendordirs ::
++
++
++
++# --- MakeMaker force section:
++# Phony target to force checking subdirectories.
++FORCE :
++	$(NOECHO) $(NOOP)
++
++
++# --- MakeMaker perldepend section:
++
++PERL_HDRS = \
++	$(PERL_INC)/EXTERN.h		\
++	$(PERL_INC)/INTERN.h		\
++	$(PERL_INC)/XSUB.h		\
++	$(PERL_INC)/av.h		\
++	$(PERL_INC)/cc_runtime.h	\
++	$(PERL_INC)/config.h		\
++	$(PERL_INC)/cop.h		\
++	$(PERL_INC)/cv.h		\
++	$(PERL_INC)/dosish.h		\
++	$(PERL_INC)/embed.h		\
++	$(PERL_INC)/embedvar.h		\
++	$(PERL_INC)/fakethr.h		\
++	$(PERL_INC)/form.h		\
++	$(PERL_INC)/gv.h		\
++	$(PERL_INC)/handy.h		\
++	$(PERL_INC)/hv.h		\
++	$(PERL_INC)/intrpvar.h		\
++	$(PERL_INC)/iperlsys.h		\
++	$(PERL_INC)/keywords.h		\
++	$(PERL_INC)/mg.h		\
++	$(PERL_INC)/nostdio.h		\
++	$(PERL_INC)/op.h		\
++	$(PERL_INC)/opcode.h		\
++	$(PERL_INC)/patchlevel.h	\
++	$(PERL_INC)/perl.h		\
++	$(PERL_INC)/perlio.h		\
++	$(PERL_INC)/perlsdio.h		\
++	$(PERL_INC)/perlsfio.h		\
++	$(PERL_INC)/perlvars.h		\
++	$(PERL_INC)/perly.h		\
++	$(PERL_INC)/pp.h		\
++	$(PERL_INC)/pp_proto.h		\
++	$(PERL_INC)/proto.h		\
++	$(PERL_INC)/regcomp.h		\
++	$(PERL_INC)/regexp.h		\
++	$(PERL_INC)/regnodes.h		\
++	$(PERL_INC)/scope.h		\
++	$(PERL_INC)/sv.h		\
++	$(PERL_INC)/thread.h		\
++	$(PERL_INC)/unixish.h		\
++	$(PERL_INC)/util.h
++
++$(OBJECT) : $(PERL_HDRS)
++
++
++# --- MakeMaker makefile section:
++
++$(OBJECT) : $(FIRST_MAKEFILE)
++
++# We take a very conservative approach here, but it's worth it.
++# We move Makefile to Makefile.old here to avoid gnu make looping.
++$(FIRST_MAKEFILE) : Makefile.PL $(CONFIGDEP)
++	$(NOECHO) $(ECHO) "Makefile out-of-date with respect to $?"
++	$(NOECHO) $(ECHO) "Cleaning current config before rebuilding Makefile..."
++	-$(NOECHO) $(RM_F) $(MAKEFILE_OLD)
++	-$(NOECHO) $(MV)   $(FIRST_MAKEFILE) $(MAKEFILE_OLD)
++	- $(MAKE) $(USEMAKEFILE) $(MAKEFILE_OLD) clean $(DEV_NULL)
++	$(PERLRUN) Makefile.PL 
++	$(NOECHO) $(ECHO) "==> Your Makefile has been rebuilt. <=="
++	$(NOECHO) $(ECHO) "==> Please rerun the $(MAKE) command.  <=="
++	$(FALSE)
++
++
++
++# --- MakeMaker staticmake section:
++
++# --- MakeMaker makeaperl section ---
++MAP_TARGET    = perl
++FULLPERL      = /usr/bin/perl
++
++$(MAP_TARGET) :: static $(MAKE_APERL_FILE)
++	$(MAKE) $(USEMAKEFILE) $(MAKE_APERL_FILE) $@
++
++$(MAKE_APERL_FILE) : $(FIRST_MAKEFILE) pm_to_blib
++	$(NOECHO) $(ECHO) Writing \"$(MAKE_APERL_FILE)\" for this $(MAP_TARGET)
++	$(NOECHO) $(PERLRUNINST) \
++		Makefile.PL DIR= \
++		MAKEFILE=$(MAKE_APERL_FILE) LINKTYPE=static \
++		MAKEAPERL=1 NORECURS=1 CCCDLFLAGS=
++
++
++# --- MakeMaker test section:
++
++TEST_VERBOSE=0
++TEST_TYPE=test_$(LINKTYPE)
++TEST_FILE = test.pl
++TEST_FILES = 
++TESTDB_SW = -d
++
++testdb :: testdb_$(LINKTYPE)
++
++test :: $(TEST_TYPE) subdirs-test
++
++subdirs-test ::
++	$(NOECHO) $(NOOP)
++
++
++test_dynamic :: pure_all
++	PERL_DL_NONLAZY=1 $(FULLPERLRUN) "-I$(INST_LIB)" "-I$(INST_ARCHLIB)" $(TEST_FILE)
++
++testdb_dynamic :: pure_all
++	PERL_DL_NONLAZY=1 $(FULLPERLRUN) $(TESTDB_SW) "-I$(INST_LIB)" "-I$(INST_ARCHLIB)" $(TEST_FILE)
++
++test_ : test_dynamic
++
++test_static :: pure_all $(MAP_TARGET)
++	PERL_DL_NONLAZY=1 ./$(MAP_TARGET) "-I$(INST_LIB)" "-I$(INST_ARCHLIB)" $(TEST_FILE)
++
++testdb_static :: pure_all $(MAP_TARGET)
++	PERL_DL_NONLAZY=1 ./$(MAP_TARGET) $(TESTDB_SW) "-I$(INST_LIB)" "-I$(INST_ARCHLIB)" $(TEST_FILE)
++
++
++
++# --- MakeMaker ppd section:
++# Creates a PPD (Perl Package Description) for a binary distribution.
++ppd :
++	$(NOECHO) $(ECHO) '<SOFTPKG NAME="$(DISTNAME)" VERSION="0.2">' > $(DISTNAME).ppd
++	$(NOECHO) $(ECHO) '    <ABSTRACT></ABSTRACT>' >> $(DISTNAME).ppd
++	$(NOECHO) $(ECHO) '    <AUTHOR>Ivo Hofacker &lt;ivo at tbi.univie.ac.at&gt;</AUTHOR>' >> $(DISTNAME).ppd
++	$(NOECHO) $(ECHO) '    <IMPLEMENTATION>' >> $(DISTNAME).ppd
++	$(NOECHO) $(ECHO) '        <ARCHITECTURE NAME="i486-linux-gnu-thread-multi-5.10" />' >> $(DISTNAME).ppd
++	$(NOECHO) $(ECHO) '        <CODEBASE HREF="" />' >> $(DISTNAME).ppd
++	$(NOECHO) $(ECHO) '    </IMPLEMENTATION>' >> $(DISTNAME).ppd
++	$(NOECHO) $(ECHO) '</SOFTPKG>' >> $(DISTNAME).ppd
++
++
++# --- MakeMaker pm_to_blib section:
++
++pm_to_blib : $(FIRST_MAKEFILE) $(TO_INST_PM)
++	$(NOECHO) $(ABSPERLRUN) -MExtUtils::Install -e 'pm_to_blib({@ARGV}, '\''$(INST_LIB)/auto'\'', q[$(PM_FILTER)], '\''$(PERM_DIR)'\'')' -- \
++	  RNA.pm $(INST_LIBDIR)/RNA.pm 
++	$(NOECHO) $(TOUCH) pm_to_blib
++
++
++# --- MakeMaker selfdocument section:
++
++
++# --- MakeMaker postamble section:
++
++
++# End.

Modified: trunk/packages/vienna-rna/trunk/debian/patches/fix_RNAlib_info.patch
===================================================================
--- trunk/packages/vienna-rna/trunk/debian/patches/fix_RNAlib_info.patch	2011-01-30 17:53:23 UTC (rev 5829)
+++ trunk/packages/vienna-rna/trunk/debian/patches/fix_RNAlib_info.patch	2011-01-30 18:02:25 UTC (rev 5830)
@@ -1,15 +1,12 @@
-Index: viennarna-1.8.4/man/RNAlib.texinfo
+Index: vienna-rna-1.8.4/man/RNAlib.texinfo
 ===================================================================
---- viennarna-1.8.4.orig/man/RNAlib.texinfo	2011-01-30 12:53:39.000000000 +0100
-+++ viennarna-1.8.4/man/RNAlib.texinfo	2011-01-30 12:55:12.000000000 +0100
-@@ -18,6 +18,10 @@
+--- vienna-rna-1.8.4.orig/man/RNAlib.texinfo	2011-01-30 17:38:00.000000000 +0000
++++ vienna-rna-1.8.4/man/RNAlib.texinfo	2011-01-30 17:38:23.000000000 +0000
+@@ -17,6 +17,7 @@
+ @title{Vienna RNA Package}
  @sp
  @subtitle{A Library for folding and comparing RNA secondary structures}
++ at dircategory	science
  
-+ at direntry
-+* rnalib: (rnalib).	scientific library
-+ at end direntry
-+
  @vskip 0pt plus 1filll
  Copyright @copyright{1994-2002} @author{Ivo Hofacker and Peter Stadler}
- @c @smallexample

Modified: trunk/packages/vienna-rna/trunk/debian/rules
===================================================================
--- trunk/packages/vienna-rna/trunk/debian/rules	2011-01-30 17:53:23 UTC (rev 5829)
+++ trunk/packages/vienna-rna/trunk/debian/rules	2011-01-30 18:02:25 UTC (rev 5830)
@@ -98,11 +98,11 @@
 
 	# Add here commands to install the arch part of the package into
 	# debian/tmp.
-	rm $(CURDIR)/usr/share/info/dir.gz
 	$(MAKE) DESTDIR=$(CURDIR)/debian/vienna-rna install
 
 	ls Utils/*.pl |while read line ; do cp $(CURDIR)/$$line $(CURDIR)/debian/vienna-rna/usr/bin/`echo $$line |awk -F "/" '{print $$2}'|tr -d '\.pl'` ; done
 	dh_install -s
+#	rm $(CURDIR)/debian/vienna-rna/usr/share/info/dir.gz
 # Must not depend on anything. This is to be called by
 # binary-arch/binary-indep
 # in another 'make' thread.

More information about the debian-med-commit mailing list