[med-svn] [SCM] clustalw branch, meta, updated. 3da4b28f2c72f6a7088b97c533f176831603d183
Charles Plessy
plessy at debian.org
Tue Mar 1 04:20:33 UTC 2011
The following commit has been merged in the meta branch:
commit 6cab97b0f6c1fa554c2449d8a523e2df08797f40
Author: Charles Plessy <plessy at debian.org>
Date: Tue Mar 1 13:18:03 2011 +0900
# 2.1+lgpl-2 build that was uploaded earlier.
diff --git a/amd64.log b/amd64.log
index b7ac53c..f9739c0 100644
--- a/amd64.log
+++ b/amd64.log
@@ -1,20 +1,18 @@
-sbuild (Debian sbuild) 0.60.8 (12 Dec 2010) on aqwa.igloo
+sbuild (Debian sbuild) 0.60.8 (12 Dec 2010) on anx178.gsc.riken.jp
╔══════════════════════════════════════════════════════════════════════════════╗
-║ clustalw 2.1+lgpl-1 (amd64) 29 janv. 2011 20:05 ║
+║ clustalw 2.1+lgpl-2 (amd64) 07 Feb 2011 15:51 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: clustalw
-Version: 2.1+lgpl-1
-Source Version: 2.1+lgpl-1
+Version: 2.1+lgpl-2
+Source Version: 2.1+lgpl-2
Architecture: amd64
-Hit ftp://ftp.jaist.ac.jp sid Release.gpg
-Get:1 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main Translation-en
-Ign ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main Translation-en
-Hit ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main Translation-fr
-Hit ftp://ftp.jaist.ac.jp sid Release
-Hit ftp://ftp.jaist.ac.jp sid/main Sources/DiffIndex
-Hit ftp://ftp.jaist.ac.jp sid/main amd64 Packages/DiffIndex
+Hit http://ftp.riken.jp unstable Release.gpg
+Ign http://ftp.riken.jp/Linux/debian/debian/ unstable/main Translation-en
+Hit http://ftp.riken.jp unstable Release
+Hit http://ftp.riken.jp unstable/main Sources/DiffIndex
+Hit http://ftp.riken.jp unstable/main amd64 Packages/DiffIndex
Reading package lists...
Reading package lists...
Building dependency tree...
@@ -29,7 +27,7 @@ Reading state information...
Local sources
─────────────
-clustalw_2.1+lgpl-1.dsc exists in .; copying to chroot
+clustalw_2.1+lgpl-2.dsc exists in .; copying to chroot
Check arch
──────────
@@ -69,7 +67,7 @@ coreutils: already installed (8.5-1)
dash: already installed (0.5.5.1-7.4)
debianutils: already installed (3.4.3)
diffutils: already installed (1:3.0-1)
-dpkg: already installed (1.15.8.9)
+dpkg: already installed (1.15.8.10)
e2fsprogs: already installed (1.41.12-2)
findutils: already installed (4.4.2-1+b1)
grep: already installed (2.6.3-3)
@@ -86,11 +84,11 @@ tar: already installed (1.25-3)
bsdutils: already installed (1:2.17.2-9)
mount: already installed (2.17.2-9)
util-linux: already installed (2.17.2-9)
-libc6-dev: already installed (2.11.2-10)
+libc6-dev: already installed (2.11.2-11)
gcc: already installed (4:4.4.5-2 >= 4:4.4.3 is satisfied)
g++: already installed (4:4.4.5-2 >= 4:4.4.3 is satisfied)
make: already installed (3.81-8)
-dpkg-dev: already installed (1.15.8.9 >= 1.13.5 is satisfied)
+dpkg-dev: already installed (1.15.8.10 >= 1.13.5 is satisfied)
debhelper: missing
Using default version 8.0.0
cdbs: missing
@@ -114,14 +112,12 @@ The following NEW packages will be installed:
autotools-dev bsdmainutils cdbs debhelper file gettext gettext-base
groff-base html2text intltool-debian libcroco3 libglib2.0-0 libmagic1
libpcre3 libunistring0 libxml2 man-db po-debconf
+debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 18 newly installed, 0 to remove and 0 not upgraded.
-Need to get 208 kB/10.3 MB of archives.
+Need to get 0 B/10.3 MB of archives.
After this operation, 28.3 MB of additional disk space will be used.
-Get:1 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main bsdmainutils amd64 8.2.2 [208 kB]
-debconf: delaying package configuration, since apt-utils is not installed
-Fetched 208 kB in 0s (407 kB/s)
Selecting previously deselected package bsdmainutils.
-(Reading database ... 10138 files and directories currently installed.)
+(Reading database ... 10134 files and directories currently installed.)
Unpacking bsdmainutils (from .../bsdmainutils_8.2.2_amd64.deb) ...
Selecting previously deselected package groff-base.
Unpacking groff-base (from .../groff-base_1.20.1-10_amd64.deb) ...
@@ -187,9 +183,9 @@ Building dependency tree...
Reading state information...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Checking correctness of dependencies...
-Kernel: Linux 2.6.32-5-amd64 amd64 (x86_64)
-Toolchain package versions: binutils_2.20.1-16 dpkg-dev_1.15.8.9 g++-4.4_4.4.5-10 gcc-4.4_4.4.5-10 libc6-dev_2.11.2-10 libstdc++6_4.4.5-10 libstdc++6-4.4-dev_4.4.5-10 linux-libc-dev_2.6.32-30
-Package versions: apt_0.8.10.3 autotools-dev_20100122.1 base-files_6.0 base-passwd_3.5.22 bash_4.1-3 binutils_2.20.1-16 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.89 coreutils_8.5-1 cpp_4:4.4.5-2 cpp-4.4_4.4.5-10 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debfoster_2.7-1.1 debhelper_8.0.0 debian-archive-keyring_2010.08.28 debianutils_3.4.3 diffutils_1:3.0-1 dpkg_1.15.8.9 dpkg-dev_1.15.8.9 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-1 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.4.5-2 g++-4.4_4.4.5-10 gcc_4:4.4.5-2 gcc-4.4_4.4.5-10 gcc-4.4-base_4.4.5-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.10-4 gpgv_1.4.10-4 grep_2.6.3-3 groff-base_1.20.1-10 gzip_1.3.12-9 hostname_3.05 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-10 libc-dev-bin_2.11.2-10 libc6_2.11.2-10 libc6-dev_2.11.2-10 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-3 libdpkg-perl_1.15.8.9 libgc1c2_1:6.8-1.2 libgcc1_1:4.4.5-10 libgdbm3_1.8.3-9 libglib2.0-0_2.24.2-1 libgmp3c2_2:4.3.2+dfsg-1 libgomp1_4.4.5-10 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr4_3.0.0-2 libncurses5_5.7+20100313-5 libpam-modules_1.1.1-6.1 libpam-runtime_1.1.1-6.1 libpam0g_1.1.1-6.1 libpcre3_8.02-1.1 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.4.5-10 libstdc++6-4.4-dev_4.4.5-10 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-16 libuuid1_2.17.2-9 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.32-30 login_1:4.1.4.2+svn3283-2 lsb-base_3.2-27 make_3.81-8 man-db_2.5.7-8 mawk_1.3.3-15 mount_2.17.2-9 ncurses-base_5.7+20100313-5 ncurses-bin_5.7+20100313-5 passwd_1:4.1.4.2+svn3283-2 patch_2.6-3 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-8 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011a-1 util-linux_2.17.2-9 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3
+Kernel: Linux 2.6.32-trunk-vserver-amd64 amd64 (x86_64)
+Toolchain package versions: binutils_2.20.1-16 dpkg-dev_1.15.8.10 g++-4.4_4.4.5-10 gcc-4.4_4.4.5-10 libc6-dev_2.11.2-11 libstdc++6_4.4.5-10 libstdc++6-4.4-dev_4.4.5-10 linux-libc-dev_2.6.32-30
+Package versions: apt_0.8.10.3 autotools-dev_20100122.1 base-files_6.0 base-passwd_3.5.22 bash_4.1-3 binutils_2.20.1-16 bsdmainutils_8.2.2 bsdutils_1:2.17.2-9 build-essential_11.5 bzip2_1.0.5-6 cdbs_0.4.89 coreutils_8.5-1 cpp_4:4.4.5-2 cpp-4.4_4.4.5-10 dash_0.5.5.1-7.4 debconf_1.5.38 debconf-i18n_1.5.38 debfoster_2.7-1.1 debhelper_8.0.0 debian-archive-keyring_2010.08.28 debianutils_3.4.3 diffutils_1:3.0-1 dpkg_1.15.8.10 dpkg-dev_1.15.8.10 e2fslibs_1.41.12-2 e2fsprogs_1.41.12-2 fakeroot_1.14.5-1 file_5.04-5 findutils_4.4.2-1+b1 g++_4:4.4.5-2 g++-4.4_4.4.5-10 gcc_4:4.4.5-2 gcc-4.4_4.4.5-10 gcc-4.4-base_4.4.5-10 gettext_0.18.1.1-3 gettext-base_0.18.1.1-3 gnupg_1.4.10-4 gpgv_1.4.10-4 grep_2.6.3-3 groff-base_1.20.1-10 gzip_1.3.12-9 hostname_3.05 html2text_1.3.2a-15 initscripts_2.88dsf-13.1 insserv_1.14.0-2 intltool-debian_0.35.0+20060710.1 libacl1_2.2.49-4 libattr1_1:2.4.44-2 libblkid1_2.17.2-9 libbz2-1.0_1.0.5-6 libc-bin_2.11.2-11 libc-dev-bin_2.11.2-11 libc6_2.11.2-11 libc6-dev_2.11.2-11 libcomerr2_1.41.12-2 libcroco3_0.6.2-1 libdb4.7_4.7.25-12 libdb4.8_4.8.30-4 libdpkg-perl_1.15.8.10 libgc1c2_1:6.8-1.2 libgcc1_1:4.4.5-10 libgdbm3_1.8.3-9 libglib2.0-0_2.24.2-1 libgmp3c2_2:4.3.2+dfsg-1 libgomp1_4.4.5-10 liblocale-gettext-perl_1.05-6 liblzma2_5.0.0-2 libmagic1_5.04-5 libmpfr4_3.0.0-2 libncurses5_5.7+20100313-5 libpam-modules_1.1.1-6.1 libpam-runtime_1.1.1-6.1 libpam0g_1.1.1-6.1 libpcre3_8.02-1.1 libreadline6_6.1-3 libselinux1_2.0.96-1 libsepol1_2.0.42-1 libslang2_2.2.2-4 libss2_1.41.12-2 libstdc++6_4.4.5-10 libstdc++6-4.4-dev_4.4.5-10 libtext-charwidth-perl_0.04-6 libtext-iconv-perl_1.7-2 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_1.2000-1 libunistring0_0.9.3-3 libusb-0.1-4_2:0.1.12-16 libuuid1_2.17.2-9 libxml2_2.7.8.dfsg-2 linux-libc-dev_2.6.32-30 login_1:4.1.4.2+svn3283-2 lsb-base_3.2-27 make_3.81-8 man-db_2.5.7-8 mawk_1.3.3-15 mount_2.17.2-9 ncurses-base_5.7+20100313-5 ncurses-bin_5.7+20100313-5 passwd_1:4.1.4.2+svn3283-2 patch_2.6-3 perl_5.10.1-17 perl-base_5.10.1-17 perl-modules_5.10.1-17 po-debconf_1.0.16+nmu1 readline-common_6.1-3 sed_4.2.1-8 sensible-utils_0.0.6 sysv-rc_2.88dsf-13.1 sysvinit_2.88dsf-13.1 sysvinit-utils_2.88dsf-13.1 tar_1.25-3 tzdata_2011a-1 util-linux_2.17.2-9 xz-utils_5.0.0-2 zlib1g_1:1.2.3.4.dfsg-3
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -199,10 +195,10 @@ Package versions: apt_0.8.10.3 autotools-dev_20100122.1 base-files_6.0 base-pass
Unpack source
─────────────
-dpkg-source: warning: extracting unsigned source package (clustalw_2.1+lgpl-1.dsc)
+dpkg-source: warning: extracting unsigned source package (clustalw_2.1+lgpl-2.dsc)
dpkg-source: info: extracting clustalw in clustalw-2.1+lgpl
dpkg-source: info: unpacking clustalw_2.1+lgpl.orig.tar.gz
-dpkg-source: info: unpacking clustalw_2.1+lgpl-1.debian.tar.gz
+dpkg-source: info: unpacking clustalw_2.1+lgpl-2.debian.tar.gz
Check disc space
────────────────
@@ -217,7 +213,7 @@ dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2
dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor):
dpkg-buildpackage: source package clustalw
-dpkg-buildpackage: source version 2.1+lgpl-1
+dpkg-buildpackage: source version 2.1+lgpl-2
dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
dpkg-source --before-build clustalw-2.1+lgpl
dpkg-buildpackage: host architecture amd64
@@ -227,13 +223,13 @@ test -x debian/rules
dh_testroot
/usr/bin/make -f debian/rules reverse-config
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl'
+make[1]: Entering directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl'
for i in ./config.guess ./config.sub ; do \
if test -e $i.cdbs-orig ; then \
mv $i.cdbs-orig $i ; \
fi ; \
done
-make[1]: Leaving directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl'
+make[1]: Leaving directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl'
if [ "reverse-patches" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "reverse-patches" != "reverse-patches" ]; then touch debian/stamp-patched; fi
@@ -245,9 +241,9 @@ for dir in debian/patches ; do \
done
rm -f debian/stamp-makefile-build debian/stamp-makefile-install
/usr/bin/make -C . -k distclean
-make[1]: Entering directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl'
+make[1]: Entering directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl'
make[1]: *** No rule to make target `distclean'.
-make[1]: Leaving directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl'
+make[1]: Leaving directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl'
make: [makefile-clean] Error 2 (ignored)
rm -f debian/stamp-autotools
rmdir --ignore-fail-on-non-empty .
@@ -263,29 +259,29 @@ dh_clean
dpkg-source -b clustalw-2.1+lgpl
dpkg-source: info: using source format `3.0 (quilt)'
dpkg-source: info: building clustalw using existing ./clustalw_2.1+lgpl.orig.tar.gz
-dpkg-source: info: building clustalw in clustalw_2.1+lgpl-1.debian.tar.gz
-dpkg-source: info: building clustalw in clustalw_2.1+lgpl-1.dsc
+dpkg-source: info: building clustalw in clustalw_2.1+lgpl-2.debian.tar.gz
+dpkg-source: info: building clustalw in clustalw_2.1+lgpl-2.dsc
debian/rules build
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
+make[1]: Entering directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl'
for i in ./config.guess ./config.sub ; do \
if test -e $i.cdbs-orig ; then \
mv $i.cdbs-orig $i ; \
fi ; \
done
-make[1]: Leaving directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl'
+make[1]: Leaving directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
/usr/bin/make -f debian/rules update-config ; \
fi
+make[1]: Entering directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl'
/usr/share/cdbs/1/rules/simple-patchsys.mk:31: WARNING: simple-patchsys.mk is deprecated - please use source format 3.0 (quilt) instead
-make[1]: Entering directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl'
if test -e /usr/share/misc/config.guess ; then \
for i in ./config.guess ; do \
if ! test -e $i.cdbs-orig ; then \
@@ -302,7 +298,7 @@ if test -e /usr/share/misc/config.sub ; then \
fi ; \
done ; \
fi
-make[1]: Leaving directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl'
+make[1]: Leaving directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl'
if test -e /usr/share/misc/config.guess ; then \
for i in ./config.guess ; do \
if ! test -e $i.cdbs-orig ; then \
@@ -320,9 +316,9 @@ if test -e /usr/share/misc/config.sub ; then \
done ; \
fi
touch debian/stamp-autotools-files
-chmod a+x /build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl/./configure
+chmod a+x /build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl/./configure
mkdir -p .
-cd . && CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS="" /build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl/./configure --build=x86_64-linux-gnu --prefix=/usr --includedir="\${prefix}/include" --mandir="\${prefix}/share/man" --infodir="\${prefix}/share/info" --sysconfdir=/etc --localstatedir=/var --libexecdir="\${prefix}/lib/clustalw" --disable-maintainer-mode --disable-dependency-tracking --disable-silent-rules --srcdir=.
+cd . && CFLAGS="-g -O2 -g -Wall -O2" CXXFLAGS="-g -O2 -g -Wall -O2" CPPFLAGS="" LDFLAGS="" /build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl/./configure --build=x86_64-linux-gnu --prefix=/usr --includedir="\${prefix}/include" --mandir="\${prefix}/share/man" --infodir="\${prefix}/share/info" --sysconfdir=/etc --localstatedir=/var --libexecdir="\${prefix}/lib/clustalw" --disable-maintainer-mode --disable-dependency-tracking --disable-silent-rules --srcdir=.
configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-silent-rules
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
@@ -380,16 +376,16 @@ config.status: executing depfiles commands
configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-silent-rules
touch debian/stamp-autotools
/usr/bin/make -C .
-make[1]: Entering directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl'
+make[1]: Entering directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl'
Making all in m4
-make[2]: Entering directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl/m4'
+make[2]: Entering directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl/m4'
make[2]: Nothing to be done for `all'.
-make[2]: Leaving directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl/m4'
+make[2]: Leaving directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl/m4'
Making all in src
-make[2]: Entering directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl/src'
+make[2]: Entering directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl/src'
/usr/bin/make all-recursive
-make[3]: Entering directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl/src'
-make[4]: Entering directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl/src'
+make[3]: Entering directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl/src'
+make[4]: Entering directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl/src'
g++ -DHAVE_CONFIG_H -I. -g -O2 -g -Wall -O2 -c -o FullPairwiseAlign.o `test -f './pairwise/FullPairwiseAlign.cpp' || echo './'`./pairwise/FullPairwiseAlign.cpp
g++ -DHAVE_CONFIG_H -I. -g -O2 -g -Wall -O2 -c -o FastPairwiseAlign.o `test -f './pairwise/FastPairwiseAlign.cpp' || echo './'`./pairwise/FastPairwiseAlign.cpp
g++ -DHAVE_CONFIG_H -I. -g -O2 -g -Wall -O2 -c -o MSFFileParser.o `test -f './fileInput/MSFFileParser.cpp' || echo './'`./fileInput/MSFFileParser.cpp
@@ -462,14 +458,14 @@ g++ -DHAVE_CONFIG_H -I. -g -O2 -g -Wall -O2 -c -o Clustal.o `test -f './Clus
g++ -DHAVE_CONFIG_H -I. -g -O2 -g -Wall -O2 -c -o main.o `test -f './main.cpp' || echo './'`./main.cpp
g++ -g -O2 -g -Wall -O2 -o clustalw2 FullPairwiseAlign.o FastPairwiseAlign.o MSFFileParser.o FileReader.o PIRFileParser.o RSFFileParser.o GDEFileParser.o InFileStream.o ClustalFileParser.o PearsonFileParser.o FileParser.o EMBLFileParser.o RootedClusterTree.o UPGMAAlgorithm.o Node.o RootedGuideTree.o RootedTreeOutput.o Tree.o ClusterTree.o TreeInterface.o UnRootedClusterTree.o ClusterTreeOutput.o RandomGenerator.o NJTree.o AlignmentSteps.o InteractiveMenu.o CommandLineParser.o SubMatrix.o Iteration.o MSA.o MyersMillerProfileAlign.o ProfileStandard.o ProfileWithSub.o ProfileBase.o LowScoreSegProfile.o OutputFile.o UserParameters.o Utility.o InvalidCombination.o DebugLog.o ClustalWResources.o VectorOutOfRange.o SymMatrix.o Stats.o Help.o Alignment.o AlignmentOutput.o ObjectiveScore.o Sequence.o Clustal.o main.o
Iteration.o: In function `clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)':
-/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl/src/./multipleAlign/Iteration.cpp:231: warning: the use of `tmpnam' is dangerous, better use `mkstemp'
-make[4]: Leaving directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl/src'
-make[3]: Leaving directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl/src'
-make[2]: Leaving directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl/src'
-make[2]: Entering directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl'
+/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl/src/./multipleAlign/Iteration.cpp:231: warning: the use of `tmpnam' is dangerous, better use `mkstemp'
+make[4]: Leaving directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl/src'
+make[3]: Leaving directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl/src'
+make[2]: Leaving directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl/src'
+make[2]: Entering directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl'
make[2]: Nothing to be done for `all-am'.
-make[2]: Leaving directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl'
-make[1]: Leaving directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl'
+make[2]: Leaving directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl'
+make[1]: Leaving directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl'
touch debian/stamp-makefile-build
DEB_MAKE_CHECK_TARGET unset, not running checks
fakeroot debian/rules binary
@@ -496,39 +492,39 @@ if test -e /usr/share/misc/config.sub ; then \
done ; \
fi
DEB_MAKE_CHECK_TARGET unset, not running checks
-/usr/bin/make -C . install DESTDIR=/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl/debian/clustalw/
-make[1]: Entering directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl'
+/usr/bin/make -C . install DESTDIR=/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl/debian/clustalw/
+make[1]: Entering directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl'
Making install in m4
-make[2]: Entering directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl/m4'
-make[3]: Entering directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl/m4'
+make[2]: Entering directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl/m4'
+make[3]: Entering directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl/m4'
make[3]: Nothing to be done for `install-exec-am'.
-test -z "/usr/share/aclocal" || /bin/mkdir -p "/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl/debian/clustalw//usr/share/aclocal"
-make[3]: Leaving directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl/m4'
-make[2]: Leaving directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl/m4'
+test -z "/usr/share/aclocal" || /bin/mkdir -p "/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl/debian/clustalw//usr/share/aclocal"
+make[3]: Leaving directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl/m4'
+make[2]: Leaving directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl/m4'
Making install in src
-make[2]: Entering directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl/src'
-make[3]: Entering directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl/src'
-make[4]: Entering directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl/src'
-test -z "/usr/bin" || /bin/mkdir -p "/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl/debian/clustalw//usr/bin"
- /usr/bin/install -c clustalw2 '/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl/debian/clustalw//usr/bin'
+make[2]: Entering directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl/src'
+make[3]: Entering directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl/src'
+make[4]: Entering directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl/src'
+test -z "/usr/bin" || /bin/mkdir -p "/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl/debian/clustalw//usr/bin"
+ /usr/bin/install -c clustalw2 '/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl/debian/clustalw//usr/bin'
make[4]: Nothing to be done for `install-data-am'.
-make[4]: Leaving directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl/src'
-make[3]: Leaving directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl/src'
-make[2]: Leaving directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl/src'
-make[2]: Entering directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl'
-make[3]: Entering directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl'
+make[4]: Leaving directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl/src'
+make[3]: Leaving directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl/src'
+make[2]: Leaving directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl/src'
+make[2]: Entering directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl'
+make[3]: Entering directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl'
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
-make[3]: Leaving directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl'
-make[2]: Leaving directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl'
-make[1]: Leaving directory `/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl'
+make[3]: Leaving directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl'
+make[2]: Leaving directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl'
+make[1]: Leaving directory `/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl'
touch debian/stamp-makefile-install
Adding cdbs dependencies to debian/clustalw.substvars
dh_installdirs -pclustalw
# We have to ask upstream if it is importnat for them that the binary is named clustalw2
-mv /build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl/debian/clustalw/usr/bin/clustalw2 /build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl/debian/clustalw/usr/bin/clustalw
+mv /build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl/debian/clustalw/usr/bin/clustalw2 /build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl/debian/clustalw/usr/bin/clustalw
# That is a bit ugly and should be better investigated.
-rmdir /build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl/clustalw-2.1+lgpl/debian/clustalw/usr/share/aclocal/
+rmdir /build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ/clustalw-2.1+lgpl/debian/clustalw/usr/share/aclocal/
dh_installdocs -pclustalw ./README
dh_installexamples -pclustalw
dh_installman -pclustalw
@@ -558,21 +554,21 @@ dh_shlibdeps -pclustalw
dh_gencontrol -pclustalw
dh_md5sums -pclustalw
dh_builddeb -pclustalw
-dpkg-deb: building package `clustalw' in `../clustalw_2.1+lgpl-1_amd64.deb'.
- dpkg-genchanges >../clustalw_2.1+lgpl-1_amd64.changes
-dpkg-genchanges: including full source code in upload
+dpkg-deb: building package `clustalw' in `../clustalw_2.1+lgpl-2_amd64.deb'.
+ dpkg-genchanges >../clustalw_2.1+lgpl-2_amd64.changes
+dpkg-genchanges: not including original source code in upload
dpkg-source --after-build clustalw-2.1+lgpl
-dpkg-buildpackage: full upload (original source is included)
+dpkg-buildpackage: binary and diff upload (original source NOT included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20110129-2006
+Build finished at 20110207-1553
-clustalw_2.1+lgpl-1_amd64.changes:
+clustalw_2.1+lgpl-2_amd64.changes:
Format: 1.8
-Date: Sat, 29 Jan 2011 19:59:40 +0900
+Date: Mon, 07 Feb 2011 12:08:53 +0900
Source: clustalw
Binary: clustalw
Architecture: source amd64
-Version: 2.1+lgpl-1
+Version: 2.1+lgpl-2
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
@@ -580,51 +576,38 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
clustalw - global multiple nucleotide or peptide sequence alignment
Changes:
- clustalw (2.1+lgpl-1) unstable; urgency=low
+ clustalw (2.1+lgpl-2) unstable; urgency=low
.
- * New upstream archive, that makes clear the relicensing to LGPL-3+.
- - Mangled debian version name in debian/watch.
- - Explained why ‘+lgpl’ in debian/README.Debian.
- - Removed XS-Autobuild field from debian/control.
- - Changed archive area in debian/control.
- - Updated license in debian/copyright and debian/clustalw.1*
- - Removed obsoleted lintian override (debian/clustalw.lintian-overrides).
- - Removed Commercial field in debian/upstream-metadata.yaml.
- * Removed un-needed documentation (debian/clustalw.docs).
- * Source package hosted in a Git repository (debian/control).
- * Use debhelper 8 (debian/control, debian/compat).
+ * Removed obsolete comment in debian/copyright.
Checksums-Sha1:
- b2105d8677cfe1660f3964b5fcce0cdd5f07c16a 1105 clustalw_2.1+lgpl-1.dsc
- f29784f68585544baa77cbeca6392e533d4cf433 350761 clustalw_2.1+lgpl.orig.tar.gz
- 9f77736600877c1d39de74d38747f55811c6583f 20789 clustalw_2.1+lgpl-1.debian.tar.gz
- 4d19125313435c9b227a9217d76408804286494f 346244 clustalw_2.1+lgpl-1_amd64.deb
+ 6edc4ef4d46dfa9637faa70dc8ed919f93b46958 1105 clustalw_2.1+lgpl-2.dsc
+ 947adaedcdbc4c8e357d772d2b042ef6f952fd4c 20514 clustalw_2.1+lgpl-2.debian.tar.gz
+ 03d29463d277177f0bf2a303feb28e67dafe0170 345858 clustalw_2.1+lgpl-2_amd64.deb
Checksums-Sha256:
- c58739004c82d00b2977f7fdde3fd6059e20694cf5bb1529b8e2bba6a08ade79 1105 clustalw_2.1+lgpl-1.dsc
- e052059b87abfd8c9e695c280bfba86a65899138c82abccd5b00478a80f49486 350761 clustalw_2.1+lgpl.orig.tar.gz
- bb770a17c066a40c69e77c1b78c8216a95609b784267b251564985437d4abb42 20789 clustalw_2.1+lgpl-1.debian.tar.gz
- 72f868f1d091767747f1690527aef6e84d762fa852162bdbe4d9640589cbb394 346244 clustalw_2.1+lgpl-1_amd64.deb
+ f40d551075983afa6155fbb2c35ace6e73921a6a2d616ffe2e93cc46ac3c9b59 1105 clustalw_2.1+lgpl-2.dsc
+ e014b63ae4bddbc373e4fe134b66320e3fe094ae542215cc8b92193afecba7de 20514 clustalw_2.1+lgpl-2.debian.tar.gz
+ 1880cac82deaae0394413a2e0ce07e30e192c0d9083b833f6c651203394ec3d8 345858 clustalw_2.1+lgpl-2_amd64.deb
Files:
- 1d22a0cf68b2440017498a30b7b06e51 1105 science optional clustalw_2.1+lgpl-1.dsc
- 144df8440a0ae083d5167616c8ceeb41 350761 science optional clustalw_2.1+lgpl.orig.tar.gz
- c41c0aa1f716709c96d067e5b513c37a 20789 science optional clustalw_2.1+lgpl-1.debian.tar.gz
- 57d8fc3eb3dbae179845f436c5a865c1 346244 science optional clustalw_2.1+lgpl-1_amd64.deb
+ 40e3b964a7dd38426464e9de0e3b4d48 1105 science optional clustalw_2.1+lgpl-2.dsc
+ a5758bf0656299421f234036bee313da 20514 science optional clustalw_2.1+lgpl-2.debian.tar.gz
+ 85ecf8c5242022aa135b9e71cd78b867 345858 science optional clustalw_2.1+lgpl-2_amd64.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-clustalw_2.1+lgpl-1_amd64.deb
+clustalw_2.1+lgpl-2_amd64.deb
─────────────────────────────
new debian package, version 2.0.
- size 346244 bytes: control archive= 1406 bytes.
+ size 345858 bytes: control archive= 1409 bytes.
1090 bytes, 22 lines control
948 bytes, 13 lines md5sums
185 bytes, 7 lines * postinst #!/bin/sh
160 bytes, 5 lines * postrm #!/bin/sh
Package: clustalw
- Version: 2.1+lgpl-1
+ Version: 2.1+lgpl-2
Architecture: amd64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 860
@@ -646,31 +629,31 @@ clustalw_2.1+lgpl-1_amd64.deb
a model from your alignment, this can be applied for improved database
searches. The Debian package hmmer creates such in form of an HMM.
-drwxr-xr-x root/root 0 2011-01-29 20:06 ./
-drwxr-xr-x root/root 0 2011-01-29 20:06 ./usr/
-drwxr-xr-x root/root 0 2011-01-29 20:06 ./usr/share/
-drwxr-xr-x root/root 0 2011-01-29 20:06 ./usr/share/clustalw/
--rw-r--r-- root/root 33752 2010-11-13 01:53 ./usr/share/clustalw/clustalw_help
-drwxr-xr-x root/root 0 2011-01-29 20:06 ./usr/share/menu/
--rw-r--r-- root/root 193 2011-01-29 19:47 ./usr/share/menu/clustalw
-drwxr-xr-x root/root 0 2011-01-29 20:06 ./usr/share/doc/
-drwxr-xr-x root/root 0 2011-01-29 20:06 ./usr/share/doc/clustalw/
--rw-r--r-- root/root 821 2011-01-29 20:00 ./usr/share/doc/clustalw/README.Debian
+drwxr-xr-x root/root 0 2011-02-07 15:53 ./
+drwxr-xr-x root/root 0 2011-02-07 15:53 ./usr/
+drwxr-xr-x root/root 0 2011-02-07 15:53 ./usr/bin/
+-rwxr-xr-x root/root 724248 2011-02-07 15:53 ./usr/bin/clustalw
+drwxr-xr-x root/root 0 2011-02-07 15:53 ./usr/share/
+drwxr-xr-x root/root 0 2011-02-07 15:53 ./usr/share/doc/
+drwxr-xr-x root/root 0 2011-02-07 15:53 ./usr/share/doc/clustalw/
+-rw-r--r-- root/root 4779 2011-02-07 12:09 ./usr/share/doc/clustalw/changelog.Debian.gz
+-rw-r--r-- root/root 821 2011-02-07 12:05 ./usr/share/doc/clustalw/README.Debian
-rw-r--r-- root/root 715 2010-09-09 23:26 ./usr/share/doc/clustalw/README
--rw-r--r-- root/root 2403 2011-01-29 19:47 ./usr/share/doc/clustalw/copyright
--rw-r--r-- root/root 3440 2011-01-29 19:47 ./usr/share/doc/clustalw/changelog.gz
-drwxr-xr-x root/root 0 2011-01-29 20:06 ./usr/share/doc/clustalw/examples/
-drwxr-xr-x root/root 0 2011-01-29 19:47 ./usr/share/doc/clustalw/examples/tests.clustalw/
--rw-r--r-- root/root 157 2011-01-29 19:47 ./usr/share/doc/clustalw/examples/tests.clustalw/seq
--rw-r--r-- root/root 1007 2011-01-29 19:47 ./usr/share/doc/clustalw/examples/tests.clustalw/nuc.data
--rw-r--r-- root/root 1013 2011-01-29 19:47 ./usr/share/doc/clustalw/examples/tests.clustalw/nuc2.data
--rw-r--r-- root/root 552 2011-01-29 19:47 ./usr/share/doc/clustalw/examples/tests.clustalw/Makefile
--rw-r--r-- root/root 4745 2011-01-29 20:00 ./usr/share/doc/clustalw/changelog.Debian.gz
-drwxr-xr-x root/root 0 2011-01-29 20:06 ./usr/share/man/
-drwxr-xr-x root/root 0 2011-01-29 20:06 ./usr/share/man/man1/
--rw-r--r-- root/root 4184 2011-01-29 20:06 ./usr/share/man/man1/clustalw.1.gz
-drwxr-xr-x root/root 0 2011-01-29 20:06 ./usr/bin/
--rwxr-xr-x root/root 724248 2011-01-29 20:06 ./usr/bin/clustalw
+-rw-r--r-- root/root 3440 2011-02-07 12:05 ./usr/share/doc/clustalw/changelog.gz
+drwxr-xr-x root/root 0 2011-02-07 15:53 ./usr/share/doc/clustalw/examples/
+drwxr-xr-x root/root 0 2011-02-07 12:05 ./usr/share/doc/clustalw/examples/tests.clustalw/
+-rw-r--r-- root/root 1007 2011-02-07 12:05 ./usr/share/doc/clustalw/examples/tests.clustalw/nuc.data
+-rw-r--r-- root/root 157 2011-02-07 12:05 ./usr/share/doc/clustalw/examples/tests.clustalw/seq
+-rw-r--r-- root/root 552 2011-02-07 12:05 ./usr/share/doc/clustalw/examples/tests.clustalw/Makefile
+-rw-r--r-- root/root 1013 2011-02-07 12:05 ./usr/share/doc/clustalw/examples/tests.clustalw/nuc2.data
+-rw-r--r-- root/root 2003 2011-02-07 12:08 ./usr/share/doc/clustalw/copyright
+drwxr-xr-x root/root 0 2011-02-07 15:53 ./usr/share/clustalw/
+-rw-r--r-- root/root 33752 2010-11-13 01:53 ./usr/share/clustalw/clustalw_help
+drwxr-xr-x root/root 0 2011-02-07 15:53 ./usr/share/menu/
+-rw-r--r-- root/root 193 2011-02-07 12:05 ./usr/share/menu/clustalw
+drwxr-xr-x root/root 0 2011-02-07 15:53 ./usr/share/man/
+drwxr-xr-x root/root 0 2011-02-07 15:53 ./usr/share/man/man1/
+-rw-r--r-- root/root 4184 2011-02-07 15:53 ./usr/share/man/man1/clustalw.1.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -684,7 +667,7 @@ Built successfully
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
-Purging /var/lib/schroot/mount/sid-amd64-sbuild-8d64a5b6-5575-44c9-a7a5-12f553aa7774/build/charles-clustalw_2.1+lgpl-1-amd64-7u3wRl
+Purging /var/lib/schroot/mount/unstable-amd64-sbuild-3d80a015-1137-4aa7-ada1-bc149a73d436/build/charles-clustalw_2.1+lgpl-2-amd64-x7tAPJ
Reading package lists...
Building dependency tree...
Reading state information...
@@ -698,7 +681,7 @@ The following packages will be REMOVED:
libpcre3* libunistring0* libxml2* man-db* po-debconf*
0 upgraded, 0 newly installed, 18 to remove and 0 not upgraded.
After this operation, 28.3 MB disk space will be freed.
-(Reading database ... 11448 files and directories currently installed.)
+(Reading database ... 11444 files and directories currently installed.)
Removing autotools-dev ...
Removing cdbs ...
Removing debhelper ...
@@ -736,17 +719,17 @@ Purging configuration files for libxml2 ...
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: amd64
-Build-Space: 29444
-Build-Time: 67
+Build-Space: 29092
+Build-Time: 58
Distribution: unstable
Install-Time: 7
-Job: clustalw_2.1+lgpl-1.dsc
+Job: clustalw_2.1+lgpl-2.dsc
Package: clustalw
-Package-Time: 77
-Source-Version: 2.1+lgpl-1
-Space: 29444
+Package-Time: 70
+Source-Version: 2.1+lgpl-2
+Space: 29092
Status: successful
-Version: 2.1+lgpl-1
+Version: 2.1+lgpl-2
────────────────────────────────────────────────────────────────────────────────
-Finished at 20110129-2006
-Build needed 00:01:17, 29444k disc space
+Finished at 20110207-1553
+Build needed 00:01:10, 29092k disc space
diff --git a/changes b/changes
index f67e5c2..c54f610 100644
--- a/changes
+++ b/changes
@@ -2,11 +2,11 @@
Hash: SHA256
Format: 1.8
-Date: Sat, 29 Jan 2011 19:59:40 +0900
+Date: Mon, 07 Feb 2011 12:08:53 +0900
Source: clustalw
Binary: clustalw
Architecture: source amd64
-Version: 2.1+lgpl-1
+Version: 2.1+lgpl-2
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
@@ -14,49 +14,36 @@ Changed-By: Charles Plessy <plessy at debian.org>
Description:
clustalw - global multiple nucleotide or peptide sequence alignment
Changes:
- clustalw (2.1+lgpl-1) unstable; urgency=low
+ clustalw (2.1+lgpl-2) unstable; urgency=low
.
- * New upstream archive, that makes clear the relicensing to LGPL-3+.
- - Mangled debian version name in debian/watch.
- - Explained why ‘+lgpl’ in debian/README.Debian.
- - Removed XS-Autobuild field from debian/control.
- - Changed archive area in debian/control.
- - Updated license in debian/copyright and debian/clustalw.1*
- - Removed obsoleted lintian override (debian/clustalw.lintian-overrides).
- - Removed Commercial field in debian/upstream-metadata.yaml.
- * Removed un-needed documentation (debian/clustalw.docs).
- * Source package hosted in a Git repository (debian/control).
- * Use debhelper 8 (debian/control, debian/compat).
+ * Removed obsolete comment in debian/copyright.
Checksums-Sha1:
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- f29784f68585544baa77cbeca6392e533d4cf433 350761 clustalw_2.1+lgpl.orig.tar.gz
- 9f77736600877c1d39de74d38747f55811c6583f 20789 clustalw_2.1+lgpl-1.debian.tar.gz
- 4d19125313435c9b227a9217d76408804286494f 346244 clustalw_2.1+lgpl-1_amd64.deb
+ 92d20055730e1a168f835f19bee182fe393f1065 1991 clustalw_2.1+lgpl-2.dsc
+ 947adaedcdbc4c8e357d772d2b042ef6f952fd4c 20514 clustalw_2.1+lgpl-2.debian.tar.gz
+ 03d29463d277177f0bf2a303feb28e67dafe0170 345858 clustalw_2.1+lgpl-2_amd64.deb
Checksums-Sha256:
- 41c73109348a731adc74ace7ae6fa5146c3221046eeded31e9b54e976660045d 1991 clustalw_2.1+lgpl-1.dsc
- e052059b87abfd8c9e695c280bfba86a65899138c82abccd5b00478a80f49486 350761 clustalw_2.1+lgpl.orig.tar.gz
- bb770a17c066a40c69e77c1b78c8216a95609b784267b251564985437d4abb42 20789 clustalw_2.1+lgpl-1.debian.tar.gz
- 72f868f1d091767747f1690527aef6e84d762fa852162bdbe4d9640589cbb394 346244 clustalw_2.1+lgpl-1_amd64.deb
+ 5a05f45aa6baf2c3bf7132ebe2d0aa9d34e362dd620e076058e669b1d5920460 1991 clustalw_2.1+lgpl-2.dsc
+ e014b63ae4bddbc373e4fe134b66320e3fe094ae542215cc8b92193afecba7de 20514 clustalw_2.1+lgpl-2.debian.tar.gz
+ 1880cac82deaae0394413a2e0ce07e30e192c0d9083b833f6c651203394ec3d8 345858 clustalw_2.1+lgpl-2_amd64.deb
Files:
- 731081a0d7d58453817a880a464512a3 1991 science optional clustalw_2.1+lgpl-1.dsc
- 144df8440a0ae083d5167616c8ceeb41 350761 science optional clustalw_2.1+lgpl.orig.tar.gz
- c41c0aa1f716709c96d067e5b513c37a 20789 science optional clustalw_2.1+lgpl-1.debian.tar.gz
- 57d8fc3eb3dbae179845f436c5a865c1 346244 science optional clustalw_2.1+lgpl-1_amd64.deb
+ 9ae8b7ba9f81119b893a6645dcc37b09 1991 science optional clustalw_2.1+lgpl-2.dsc
+ a5758bf0656299421f234036bee313da 20514 science optional clustalw_2.1+lgpl-2.debian.tar.gz
+ 85ecf8c5242022aa135b9e71cd78b867 345858 science optional clustalw_2.1+lgpl-2_amd64.deb
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diff --git a/dsc b/dsc
index 1c5cc65..c81d63c 100644
--- a/dsc
+++ b/dsc
@@ -5,7 +5,7 @@ Format: 3.0 (quilt)
Source: clustalw
Binary: clustalw
Architecture: any
-Version: 2.1+lgpl-1
+Version: 2.1+lgpl-2
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller at debian.org>, Charles Plessy <plessy at debian.org>, Andreas Tille <tille at debian.org>
Dm-Upload-Allowed: yes
@@ -16,28 +16,28 @@ Vcs-Git: git://git.debian.org/debian-med/clustalw.git
Build-Depends: debhelper (>= 8), cdbs, autotools-dev
Checksums-Sha1:
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+ 947adaedcdbc4c8e357d772d2b042ef6f952fd4c 20514 clustalw_2.1+lgpl-2.debian.tar.gz
Checksums-Sha256:
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- bb770a17c066a40c69e77c1b78c8216a95609b784267b251564985437d4abb42 20789 clustalw_2.1+lgpl-1.debian.tar.gz
+ e014b63ae4bddbc373e4fe134b66320e3fe094ae542215cc8b92193afecba7de 20514 clustalw_2.1+lgpl-2.debian.tar.gz
Files:
144df8440a0ae083d5167616c8ceeb41 350761 clustalw_2.1+lgpl.orig.tar.gz
- c41c0aa1f716709c96d067e5b513c37a 20789 clustalw_2.1+lgpl-1.debian.tar.gz
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--
global multiple nucleotide or peptide sequence alignment
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