[med-svn] r6130 - in trunk/packages/transtermhp/trunk/debian: . patches

[Alex Mestiashvili]

Author: malex-guest
Date: 2011-03-01 13:16:56 +0000 (Tue, 01 Mar 2011)
New Revision: 6130

Removed:
   trunk/packages/transtermhp/trunk/debian/patches/missing_headers
Modified:
   trunk/packages/transtermhp/trunk/debian/changelog
   trunk/packages/transtermhp/trunk/debian/rules
Log:
New upstream release  2.09, added upstream's changelog , removed patches fixed in upstream .


Modified: trunk/packages/transtermhp/trunk/debian/changelog
===================================================================
--- trunk/packages/transtermhp/trunk/debian/changelog	2011-03-01 12:28:08 UTC (rev 6129)
+++ trunk/packages/transtermhp/trunk/debian/changelog	2011-03-01 13:16:56 UTC (rev 6130)
@@ -1,3 +1,9 @@
+transtermhp (2.09-1) unstable; urgency=low
+
+  * New upstream release. 
+
+ -- Alex Mestiashvili <alex at biotec.tu-dresden.de>  Tue, 01 Mar 2011 12:24:47 +0000
+
 transtermhp (2.07-1) unstable; urgency=low
 
   * Initial release (Closes: #614382)

Deleted: trunk/packages/transtermhp/trunk/debian/patches/missing_headers
===================================================================
--- trunk/packages/transtermhp/trunk/debian/patches/missing_headers	2011-03-01 12:28:08 UTC (rev 6129)
+++ trunk/packages/transtermhp/trunk/debian/patches/missing_headers	2011-03-01 13:16:56 UTC (rev 6130)
@@ -1,46 +0,0 @@
-Description: fixed missing headers in the source .
-Author:      Alex Mestiashvili	<alex at biotec.tu-dresden.de>
-Last-Update: 2011-02-19
---- transtermhp-2.0.7.orig/seq.cc
-+++ transtermhp-2.0.7/seq.cc
-@@ -5,6 +5,10 @@
- #include <cctype>
- #include <vector>
- #include <iomanip>
-+#include <cstdlib>
-+#include <string.h>
-+#include <algorithm>
-+#include <cstdio>
- 
- #include "seq.h"
- #include "util.h"
---- transtermhp-2.0.7.orig/seq.h
-+++ transtermhp-2.0.7/seq.h
-@@ -4,6 +4,7 @@
- #ifndef SEQ_H
- #define SEQ_H
- #include <string>
-+#include <cstdlib>
- #include <vector>
- #include <list>
- 
---- transtermhp-2.0.7.orig/search.cc
-+++ transtermhp-2.0.7/search.cc
-@@ -10,6 +10,7 @@
- #include "seq.h"
- #include "ermolaeva-score.h"
- #include "util.h"
-+#include <algorithm>
- 
- int UWINDOW_SIZE = 6;
- int UWINDOW_REQUIRE = 3;
---- transtermhp-2.0.7.orig/analysis.cc
-+++ transtermhp-2.0.7/analysis.cc
-@@ -6,6 +6,7 @@
- #include <vector>
- #include <sstream>
- #include <cassert>
-+#include <algorithm>
- #include "map-output.h"
- #include "conf.h"
- #include "seq.h"

Modified: trunk/packages/transtermhp/trunk/debian/rules
===================================================================
--- trunk/packages/transtermhp/trunk/debian/rules	2011-03-01 12:28:08 UTC (rev 6129)
+++ trunk/packages/transtermhp/trunk/debian/rules	2011-03-01 13:16:56 UTC (rev 6130)
@@ -16,5 +16,8 @@
 # don't forget to notify upstream.
 override_dh_auto_test:
 
+override_dh_installchangelogs:
+	dh_installchangelogs RELEASE-NOTES.txt
+
 get-orig-source:
 	. debian/get-orig-source