[med-svn] r6150 - in trunk/packages: . rdp-classifier rdp-classifier/trunk rdp-classifier/trunk/debian rdp-classifier/trunk/debian/source
Steffen Möller
moeller at alioth.debian.org
Wed Mar 2 22:40:18 UTC 2011
Author: moeller
Date: 2011-03-02 22:40:16 +0000 (Wed, 02 Mar 2011)
New Revision: 6150
Added:
trunk/packages/rdp-classifier/
trunk/packages/rdp-classifier/trunk/
trunk/packages/rdp-classifier/trunk/debian/
trunk/packages/rdp-classifier/trunk/debian/README.Debian
trunk/packages/rdp-classifier/trunk/debian/README.source
trunk/packages/rdp-classifier/trunk/debian/changelog
trunk/packages/rdp-classifier/trunk/debian/compat
trunk/packages/rdp-classifier/trunk/debian/control
trunk/packages/rdp-classifier/trunk/debian/copyright
trunk/packages/rdp-classifier/trunk/debian/examples
trunk/packages/rdp-classifier/trunk/debian/files
trunk/packages/rdp-classifier/trunk/debian/install
trunk/packages/rdp-classifier/trunk/debian/rdp-classifier.dirs
trunk/packages/rdp-classifier/trunk/debian/rdp-classifier.docs
trunk/packages/rdp-classifier/trunk/debian/rdp-classifier.links
trunk/packages/rdp-classifier/trunk/debian/rules
trunk/packages/rdp-classifier/trunk/debian/source/
trunk/packages/rdp-classifier/trunk/debian/source/format
trunk/packages/rdp-classifier/trunk/debian/watch
Log:
Package looks good, needs some more love.
It is one of those packages that may help
qiime in some way.
Property changes on: trunk/packages/rdp-classifier/trunk/debian
___________________________________________________________________
Added: mergeWithUpstream
+ 1
Added: trunk/packages/rdp-classifier/trunk/debian/README.Debian
===================================================================
--- trunk/packages/rdp-classifier/trunk/debian/README.Debian (rev 0)
+++ trunk/packages/rdp-classifier/trunk/debian/README.Debian 2011-03-02 22:40:16 UTC (rev 6150)
@@ -0,0 +1,12 @@
+rdp-classifier for Debian
+-------------------------
+
+This packaging was yet performed only for internal use. Please
+complete it. To do:
+ * license check
+ * description in debian/control
+ * separation of documentation
+ * separation of symbolic links in separate packages to prepare
+ parallel installation of multiple versions.
+
+ -- Steffen Moeller <moeller at debian.org> Wed, 02 Mar 2011 22:50:51 +0100
Added: trunk/packages/rdp-classifier/trunk/debian/README.source
===================================================================
--- trunk/packages/rdp-classifier/trunk/debian/README.source (rev 0)
+++ trunk/packages/rdp-classifier/trunk/debian/README.source 2011-03-02 22:40:16 UTC (rev 6150)
@@ -0,0 +1,7 @@
+rdp-classifier for Debian
+-------------------------
+
+All .jar files were manually removed from the archive.
+THe macos-resource-fork-file-in-package (files starting
+with ._ ) were removed.
+
Added: trunk/packages/rdp-classifier/trunk/debian/changelog
===================================================================
--- trunk/packages/rdp-classifier/trunk/debian/changelog (rev 0)
+++ trunk/packages/rdp-classifier/trunk/debian/changelog 2011-03-02 22:40:16 UTC (rev 6150)
@@ -0,0 +1,5 @@
+rdp-classifier (2.0.1-1) UNRELEASED; urgency=low
+
+ * Initial release (Closes: #nnnn) <nnnn is the bug number of your ITP>
+
+ -- Steffen Moeller <moeller at debian.org> Wed, 02 Mar 2011 23:24:15 +0100
Added: trunk/packages/rdp-classifier/trunk/debian/compat
===================================================================
--- trunk/packages/rdp-classifier/trunk/debian/compat (rev 0)
+++ trunk/packages/rdp-classifier/trunk/debian/compat 2011-03-02 22:40:16 UTC (rev 6150)
@@ -0,0 +1 @@
+7
Added: trunk/packages/rdp-classifier/trunk/debian/control
===================================================================
--- trunk/packages/rdp-classifier/trunk/debian/control (rev 0)
+++ trunk/packages/rdp-classifier/trunk/debian/control 2011-03-02 22:40:16 UTC (rev 6150)
@@ -0,0 +1,17 @@
+Source: rdp-classifier
+Section: science
+Priority: extra
+Maintainer: Steffen Moeller <steffen_moeller at gmx.de>
+Build-Depends: debhelper (>= 7.0.50~), default-jdk, junit
+Standards-Version: 3.9.1
+Homepage: http://rdp.cme.msu.edu/.
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/rdp-classifier/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/rdp-classifier/trunk/
+
+Package: rdp-classifier
+Architecture: all
+Depends: ${shlibs:Depends}, ${misc:Depends}, default-jre
+Description: taxonomic assignment from next generation sequencing
+ The RDP Classifier is a nave Bayesian classifier that can rapidly and
+ accurately provides taxonomic assignments from domain to genus, with
+ confidence estimates for each assignment.
Added: trunk/packages/rdp-classifier/trunk/debian/copyright
===================================================================
--- trunk/packages/rdp-classifier/trunk/debian/copyright (rev 0)
+++ trunk/packages/rdp-classifier/trunk/debian/copyright 2011-03-02 22:40:16 UTC (rev 6150)
@@ -0,0 +1,34 @@
+Format: http://dep.debian.net/deps/dep5
+Upstream-Name: rdp-classifier
+Source: http://downloads.sourceforge.net/project/rdp-classifier/rdp-classifier/rdp_classifier_2.0.1/rdp_classifier_2.0.1.tar.gz
+
+Files: *
+Copyright: 2008 Michigan State University Board of Trustees
+ James R. Cole <colej at msu.edu>
+ Qiong Wang <wangqion at msu.edu>
+ George M. Garrity <garrity at msu.edu>
+ James M. Tiedje <tiedjej at msu.edu>
+License: GPL-2.0+
+
+Files: debian/*
+Copyright: 2011 Steffen Moeller <steffen_moeller at gmx.de>
+License: GPL-2.0+
+
+License: GPL-2.0+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+ .
+ On Debian systems, the complete text of the GNU General
+ Public License version 3 can be found in "/usr/share/common-licenses/GPL-2".
+
+and is licensed under the GPL version 2, see above.
Added: trunk/packages/rdp-classifier/trunk/debian/examples
===================================================================
--- trunk/packages/rdp-classifier/trunk/debian/examples (rev 0)
+++ trunk/packages/rdp-classifier/trunk/debian/examples 2011-03-02 22:40:16 UTC (rev 6150)
@@ -0,0 +1 @@
+sampledata
Added: trunk/packages/rdp-classifier/trunk/debian/files
===================================================================
--- trunk/packages/rdp-classifier/trunk/debian/files (rev 0)
+++ trunk/packages/rdp-classifier/trunk/debian/files 2011-03-02 22:40:16 UTC (rev 6150)
@@ -0,0 +1 @@
+rdp-classifier_2.0.1-1_amd64.deb science extra
Added: trunk/packages/rdp-classifier/trunk/debian/install
===================================================================
--- trunk/packages/rdp-classifier/trunk/debian/install (rev 0)
+++ trunk/packages/rdp-classifier/trunk/debian/install 2011-03-02 22:40:16 UTC (rev 6150)
@@ -0,0 +1 @@
+rdp_classifier-2.0.1.jar usr/share/java
Added: trunk/packages/rdp-classifier/trunk/debian/rdp-classifier.dirs
===================================================================
--- trunk/packages/rdp-classifier/trunk/debian/rdp-classifier.dirs (rev 0)
+++ trunk/packages/rdp-classifier/trunk/debian/rdp-classifier.dirs 2011-03-02 22:40:16 UTC (rev 6150)
@@ -0,0 +1 @@
+usr/share/java
Added: trunk/packages/rdp-classifier/trunk/debian/rdp-classifier.docs
===================================================================
--- trunk/packages/rdp-classifier/trunk/debian/rdp-classifier.docs (rev 0)
+++ trunk/packages/rdp-classifier/trunk/debian/rdp-classifier.docs 2011-03-02 22:40:16 UTC (rev 6150)
@@ -0,0 +1,2 @@
+README
+docs
Added: trunk/packages/rdp-classifier/trunk/debian/rdp-classifier.links
===================================================================
--- trunk/packages/rdp-classifier/trunk/debian/rdp-classifier.links (rev 0)
+++ trunk/packages/rdp-classifier/trunk/debian/rdp-classifier.links 2011-03-02 22:40:16 UTC (rev 6150)
@@ -0,0 +1,2 @@
+usr/share/java/rdp_classifier-2.0.1.jar usr/share/java/rdp_classifier-2.0.jar
+usr/share/java/rdp_classifier-2.0.jar usr/share/java/rdp_classifier.jar
Added: trunk/packages/rdp-classifier/trunk/debian/rules
===================================================================
--- trunk/packages/rdp-classifier/trunk/debian/rules (rev 0)
+++ trunk/packages/rdp-classifier/trunk/debian/rules 2011-03-02 22:40:16 UTC (rev 6150)
@@ -0,0 +1,22 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+# Sample debian/rules that uses debhelper.
+# This file was originally written by Joey Hess and Craig Small.
+# As a special exception, when this file is copied by dh-make into a
+# dh-make output file, you may use that output file without restriction.
+# This special exception was added by Craig Small in version 0.37 of dh-make.
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+
+%:
+ dh $@
+
+override_dh_auto_build:
+ javac -cp /usr/share/java/junit.jar `find src -name "*.java" | grep -v "\._"`
+ jar cf rdp_classifier-2.0.1.jar `find src -name "*.class"`
+
+clean::
+ find . -name "*.class" | xargs -r rm -f
+ rm -f "*.jar"
Property changes on: trunk/packages/rdp-classifier/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/rdp-classifier/trunk/debian/source/format
===================================================================
--- trunk/packages/rdp-classifier/trunk/debian/source/format (rev 0)
+++ trunk/packages/rdp-classifier/trunk/debian/source/format 2011-03-02 22:40:16 UTC (rev 6150)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/rdp-classifier/trunk/debian/watch
===================================================================
--- trunk/packages/rdp-classifier/trunk/debian/watch (rev 0)
+++ trunk/packages/rdp-classifier/trunk/debian/watch 2011-03-02 22:40:16 UTC (rev 6150)
@@ -0,0 +1,2 @@
+version=3
+http://sf.net/rdp-classifier/rdp_classifier_(.*).zip
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