[med-svn] r6242 - trunk/packages/seq-gen/trunk/debian

[Alex Mestiashvili]

Author: malex-guest
Date: 2011-03-11 16:26:17 +0000 (Fri, 11 Mar 2011)
New Revision: 6242

Added:
   trunk/packages/seq-gen/trunk/debian/seq-gen.doc-base
Removed:
   trunk/packages/seq-gen/trunk/debian/seq-gen-doc.install
Modified:
   trunk/packages/seq-gen/trunk/debian/control
   trunk/packages/seq-gen/trunk/debian/copyright
   trunk/packages/seq-gen/trunk/debian/seq-gen.install
Log:
merging seq-gen-doc with seq-gen , added doc-base


Modified: trunk/packages/seq-gen/trunk/debian/control
===================================================================
--- trunk/packages/seq-gen/trunk/debian/control	2011-03-11 13:53:45 UTC (rev 6241)
+++ trunk/packages/seq-gen/trunk/debian/control	2011-03-11 16:26:17 UTC (rev 6242)
@@ -26,14 +26,3 @@
  that incorporates most of the commonly used 
  (and computationally tractable) models of molecular sequence evolution.
 
-Package: seq-gen-doc
-Section: doc
-Architecture: all
-Depends: ${misc:Depends}
-Description: documentation for seq-gen
- Seq-Gen is a program that will simulate the evolution of nucleotide
- or amino acid sequences along a phylogeny, using common models of the
- substitution process.
- .
- This package contains the documentation for seq-gen
- 

Modified: trunk/packages/seq-gen/trunk/debian/copyright
===================================================================
--- trunk/packages/seq-gen/trunk/debian/copyright	2011-03-11 13:53:45 UTC (rev 6241)
+++ trunk/packages/seq-gen/trunk/debian/copyright	2011-03-11 16:26:17 UTC (rev 6242)
@@ -36,21 +36,5 @@
 
 Files: debian/*
 Copyright: 2011 Alex Mestiashvili <alex at biotec.tu-dresden.de>
-License: GPL-3.0+
+License: BSD 
 
-License: GPL-3.0+
- This program is free software: you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
- .
- This package is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- GNU General Public License for more details.
- .
- You should have received a copy of the GNU General Public License
- along with this program. If not, see <http://www.gnu.org/licenses/>.
- .
- On Debian systems, the complete text of the GNU General
- Public License version 3 can be found in "/usr/share/common-licenses/GPL-3".

Deleted: trunk/packages/seq-gen/trunk/debian/seq-gen-doc.install
===================================================================
--- trunk/packages/seq-gen/trunk/debian/seq-gen-doc.install	2011-03-11 13:53:45 UTC (rev 6241)
+++ trunk/packages/seq-gen/trunk/debian/seq-gen-doc.install	2011-03-11 16:26:17 UTC (rev 6242)
@@ -1,3 +0,0 @@
-documentation/Seq-Gen.Manual.html 	usr/share/doc/seq-gen/
-documentation/Using_Seq-Gen_with_PAUP	usr/share/doc/seq-gen/
-

Added: trunk/packages/seq-gen/trunk/debian/seq-gen.doc-base
===================================================================
--- trunk/packages/seq-gen/trunk/debian/seq-gen.doc-base	                        (rev 0)
+++ trunk/packages/seq-gen/trunk/debian/seq-gen.doc-base	2011-03-11 16:26:17 UTC (rev 6242)
@@ -0,0 +1,19 @@
+Document: seq-gen
+Title: Manual for seq-gen
+Author: Andrew Rambaut1 and Nicholas C. Grass
+Abstract: Seq-Gen is a program that will simulate the evolution of 
+nucleotide sequences along a phylogeny, using common models of the 
+substitution process. A range of models of molecular evolution are 
+implemented, including the general reversible model. Nucleotide 
+frequencies and other parameters of the model may be given and 
+site-specific rate heterogeneity can also be incorporated in a number 
+of ways. Any number of trees may be read in and the program will produce
+any number of data sets for each tree. Thus, large sets of replicate
+simulations can be easily created. This can be used to test phylogenetic
+hypotheses using the parametric bootstrap.
+Section: Science
+
+Format: html
+Index: /usr/share/doc/seq-gen/Seq-Gen.Manual.html
+Files: /usr/share/doc/seq-gen/Seq-Gen.Manual.html
+

Modified: trunk/packages/seq-gen/trunk/debian/seq-gen.install
===================================================================
--- trunk/packages/seq-gen/trunk/debian/seq-gen.install	2011-03-11 13:53:45 UTC (rev 6241)
+++ trunk/packages/seq-gen/trunk/debian/seq-gen.install	2011-03-11 16:26:17 UTC (rev 6242)
@@ -1 +1,4 @@
 source/seq-gen	/usr/bin/
+documentation/Seq-Gen.Manual.html 	usr/share/doc/seq-gen/
+documentation/Using_Seq-Gen_with_PAUP	usr/share/doc/seq-gen/
+