[med-svn] [SCM] igv branch, master, updated. upstream/1.5.21-47-g5dc7479

[Andreas Tille]

The following commit has been merged in the master branch:
commit e9f565f8f12e35bfe1c11fc2d66f5d5b325a55f1
Author: Andreas Tille <tille at debian.org>
Date:   Sat Mar 12 20:19:54 2011 +0100

      * New upstream version
      * Added myself to uploaders
      * debian/get-orig-source: Get latest version instead of
        packaged version (which is available via apt-get source anyway)

diff --git a/debian/get-orig-source b/debian/get-orig-source
new file mode 100644
index 0000000..6cb90da
--- /dev/null
+++ b/debian/get-orig-source
@@ -0,0 +1,21 @@
+#!/bin/sh
+# script to download and repack source package of igv
+# this is needed to remove several unneeded jars
+
+set -x
+PKG=`dpkg-parsechangelog | awk '/^Source/ { print $2 }'`
+v=`uscan --verbose --force-download | \
+    grep "Newest version on remote site is .* local version is .*" | \
+    head -n 1 | \
+    sed "s/Newest version on remote site is \([-0-9.]\+\),.*/\1/"`
+
+mkdir -p ../tarballs
+cd ../tarballs
+rm -rf igv_$v.orig
+unzip -qo ../IGVDistribution_$v.zip
+mv IGVDistribution_$v igv_$v.orig
+rm -rf igv.jar igv_$v.orig/native
+cd igv_$v.orig/lib && rm -f Jama-* batik* colt* commons-math-* commons-net-* concurrent* jargs* jhdf* junit-* log4j-* sam-* swing-layout-* xml-apis-*
+cd ../..
+BZIP2=--best tar cjf igv_$v.orig.tar.bz2 igv_$v.orig
+rm -rf igv_$v.orig

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Integrative Genomics Viewer