[med-svn] r6286 - in trunk/packages: . squizz squizz/trunk squizz/trunk/debian squizz/trunk/debian/source
olivier sallou
osallou-guest at alioth.debian.org
Fri Mar 18 10:31:55 UTC 2011
Author: osallou-guest
Date: 2011-03-18 10:31:47 +0000 (Fri, 18 Mar 2011)
New Revision: 6286
Added:
trunk/packages/squizz/
trunk/packages/squizz/trunk/
trunk/packages/squizz/trunk/debian/
trunk/packages/squizz/trunk/debian/README.Debian
trunk/packages/squizz/trunk/debian/README.source
trunk/packages/squizz/trunk/debian/changelog
trunk/packages/squizz/trunk/debian/compat
trunk/packages/squizz/trunk/debian/control
trunk/packages/squizz/trunk/debian/copyright
trunk/packages/squizz/trunk/debian/docs
trunk/packages/squizz/trunk/debian/rules
trunk/packages/squizz/trunk/debian/source/
trunk/packages/squizz/trunk/debian/source/format
trunk/packages/squizz/trunk/debian/squizz.1
trunk/packages/squizz/trunk/debian/squizz.manpages
trunk/packages/squizz/trunk/debian/watch
Log:
add debian data
Property changes on: trunk/packages/squizz/trunk/debian
___________________________________________________________________
Added: mergeWithUpstream
+ 1
Added: trunk/packages/squizz/trunk/debian/README.Debian
===================================================================
--- trunk/packages/squizz/trunk/debian/README.Debian (rev 0)
+++ trunk/packages/squizz/trunk/debian/README.Debian 2011-03-18 10:31:47 UTC (rev 6286)
@@ -0,0 +1,6 @@
+squizz for Debian
+-----------------
+
+<possible notes regarding this package - if none, delete this file>
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Fri, 18 Mar 2011 11:03:46 +0100
Added: trunk/packages/squizz/trunk/debian/README.source
===================================================================
--- trunk/packages/squizz/trunk/debian/README.source (rev 0)
+++ trunk/packages/squizz/trunk/debian/README.source 2011-03-18 10:31:47 UTC (rev 6286)
@@ -0,0 +1,9 @@
+squizz for Debian
+-----------------
+
+<this file describes information about the source package, see Debian policy
+manual section 4.14. You WILL either need to modify or delete this file>
+
+
+
+
Added: trunk/packages/squizz/trunk/debian/changelog
===================================================================
--- trunk/packages/squizz/trunk/debian/changelog (rev 0)
+++ trunk/packages/squizz/trunk/debian/changelog 2011-03-18 10:31:47 UTC (rev 6286)
@@ -0,0 +1,5 @@
+squizz (0.99a-1) unstable; urgency=low
+
+ * Initial release (Closes: #nnnn) <nnnn is the bug number of your ITP>
+
+ -- Olivier Sallou <olivier.sallou at irisa.fr> Fri, 18 Mar 2011 11:03:46 +0100
Added: trunk/packages/squizz/trunk/debian/compat
===================================================================
--- trunk/packages/squizz/trunk/debian/compat (rev 0)
+++ trunk/packages/squizz/trunk/debian/compat 2011-03-18 10:31:47 UTC (rev 6286)
@@ -0,0 +1 @@
+7
Added: trunk/packages/squizz/trunk/debian/control
===================================================================
--- trunk/packages/squizz/trunk/debian/control (rev 0)
+++ trunk/packages/squizz/trunk/debian/control 2011-03-18 10:31:47 UTC (rev 6286)
@@ -0,0 +1,22 @@
+Source: squizz
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Olivier Sallou <olivier.sallou at irisa.fr>
+DM-Upload-Allowed: yes
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/squizz/trunk/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/squizz/trunk/?rev=0&sc=0
+Homepage: ftp://ftp.pasteur.fr/pub/gensoft/projects/squizz/
+
+Package: squizz
+Architecture: any
+Build-Depends: debhelper (>= 7), gcc, automake
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: Sequence/alignment converter
+ Squizz is a sequence/alignment format checker, but it has some
+ conversion capabilities too.
+ Most common sequence and alignment formats are supported :
+ - EMBL, FASTA, GCG, GDE, GENBANK, IG, NBRF, PIR (codata), RAW, and
+ SWISSPROT.
+ - CLUSTAL, FASTA, MEGA, MSF, NEXUS, PHYLIP (interleaved and sequential) and
+ STOCKHOLM.
Added: trunk/packages/squizz/trunk/debian/copyright
===================================================================
--- trunk/packages/squizz/trunk/debian/copyright (rev 0)
+++ trunk/packages/squizz/trunk/debian/copyright 2011-03-18 10:31:47 UTC (rev 6286)
@@ -0,0 +1,31 @@
+Format: http://dep.debian.net/deps/dep5
+Upstream-Name: squizz
+Source: <url://example.com>
+
+Files: *
+Copyright: 2011 Nicolas Joly<njoly at pasteur.fr>
+License: GPL-2.0+
+
+Files: debian/*
+Copyright: 2011 Olivier Sallou <olivier.sallou at irisa.fr>
+License: GPL-2.0+
+
+License: GPL-2.0+
+ This package is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>
+ .
+ On Debian systems, the complete text of the GNU General
+ Public License version 2 can be found in "/usr/share/common-licenses/GPL-2".
+
+# Please also look if there are files or directories which have a
+# different copyright/license attached and list them here.
Added: trunk/packages/squizz/trunk/debian/docs
===================================================================
--- trunk/packages/squizz/trunk/debian/docs (rev 0)
+++ trunk/packages/squizz/trunk/debian/docs 2011-03-18 10:31:47 UTC (rev 6286)
@@ -0,0 +1,3 @@
+NEWS
+README
+TODO
Added: trunk/packages/squizz/trunk/debian/rules
===================================================================
--- trunk/packages/squizz/trunk/debian/rules (rev 0)
+++ trunk/packages/squizz/trunk/debian/rules 2011-03-18 10:31:47 UTC (rev 6286)
@@ -0,0 +1,13 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+# Sample debian/rules that uses debhelper.
+# This file was originally written by Joey Hess and Craig Small.
+# As a special exception, when this file is copied by dh-make into a
+# dh-make output file, you may use that output file without restriction.
+# This special exception was added by Craig Small in version 0.37 of dh-make.
+
+# Uncomment this to turn on verbose mode.
+#export DH_VERBOSE=1
+
+%:
+ dh $@
Property changes on: trunk/packages/squizz/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/squizz/trunk/debian/source/format
===================================================================
--- trunk/packages/squizz/trunk/debian/source/format (rev 0)
+++ trunk/packages/squizz/trunk/debian/source/format 2011-03-18 10:31:47 UTC (rev 6286)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/squizz/trunk/debian/squizz.1
===================================================================
--- trunk/packages/squizz/trunk/debian/squizz.1 (rev 0)
+++ trunk/packages/squizz/trunk/debian/squizz.1 2011-03-18 10:31:47 UTC (rev 6286)
@@ -0,0 +1,42 @@
+.TH SQUIZZ SECTION "March 18, 2011"
+.SH NAME
+squizz \- Sequence and alignment checker/converter
+.SH SYNOPSIS
+.B squizz
+.RI [ options ] " file"
+.SH DESCRIPTION
+This manual page documents briefly the
+.B squizz
+commands.
+.PP
+\fBsquizz\fP is a program that checks the format of many bioinformatics format and can converter from one format to the other.
+.SH OPTIONS
+.TP
+.B \-h
+Show summary of options.
+.TP
+.B \-A
+Detect alignment formats only.
+.TP
+.B \-S
+Detect sequence formats only
+.TP
+.B \-c <fmt>
+Convert into format <fmt>.
+.TP
+.B \-f <fmt>
+Assume input format <fmt>.
+.TP
+.B \-l
+List all supported formats.
+.TP
+.B \-n
+Count and report entries number.
+.TP
+.B \-s
+Disable strict format checks.
+.SH AUTHOR
+squizz was written by Nicolas Joly.
+.PP
+This manual page was written by Olivier Sallou <olivier.sallou at irisa.fr>,
+for the Debian project (and may be used by others).
Added: trunk/packages/squizz/trunk/debian/squizz.manpages
===================================================================
--- trunk/packages/squizz/trunk/debian/squizz.manpages (rev 0)
+++ trunk/packages/squizz/trunk/debian/squizz.manpages 2011-03-18 10:31:47 UTC (rev 6286)
@@ -0,0 +1 @@
+debian/squizz.1
Added: trunk/packages/squizz/trunk/debian/watch
===================================================================
--- trunk/packages/squizz/trunk/debian/watch (rev 0)
+++ trunk/packages/squizz/trunk/debian/watch 2011-03-18 10:31:47 UTC (rev 6286)
@@ -0,0 +1,24 @@
+# Example watch control file for uscan
+# Rename this file to "watch" and then you can run the "uscan" command
+# to check for upstream updates and more.
+# See uscan(1) for format
+
+# Compulsory line, this is a version 3 file
+version=3
+
+# Uncomment to examine a Webpage
+# <Webpage URL> <string match>
+#http://www.example.com/downloads.php squizz-(.*)\.tar\.gz
+
+# Uncomment to examine a Webserver directory
+#http://www.example.com/pub/squizz-(.*)\.tar\.gz
+
+# Uncommment to examine a FTP server
+#ftp://ftp.example.com/pub/squizz-(.*)\.tar\.gz debian uupdate
+ftp://ftp.pasteur.fr/pub/gensoft/projects/squizz/squizz-(.*)\.tar\.gz debian uupdate
+
+# Uncomment to find new files on sourceforge, for devscripts >= 2.9
+# http://sf.net/squizz/squizz-(.*)\.tar\.gz
+
+# Uncomment to find new files on GooglePages
+# http://example.googlepages.com/foo.html squizz-(.*)\.tar\.gz
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