[med-svn] r6364 - in trunk/packages/squizz/trunk/debian: . patches
Charles Plessy
plessy at alioth.debian.org
Mon Mar 21 23:17:26 UTC 2011
Author: plessy
Date: 2011-03-21 23:17:26 +0000 (Mon, 21 Mar 2011)
New Revision: 6364
Added:
trunk/packages/squizz/trunk/debian/patches/correct-manpages-section.patch
trunk/packages/squizz/trunk/debian/patches/disable-swissprot-test.patch
Removed:
trunk/packages/squizz/trunk/debian/patches/debianpackaging
Modified:
trunk/packages/squizz/trunk/debian/changelog
trunk/packages/squizz/trunk/debian/patches/series
Log:
Split patches for better readability.
Modified: trunk/packages/squizz/trunk/debian/changelog
===================================================================
--- trunk/packages/squizz/trunk/debian/changelog 2011-03-21 23:07:53 UTC (rev 6363)
+++ trunk/packages/squizz/trunk/debian/changelog 2011-03-21 23:17:26 UTC (rev 6364)
@@ -1,3 +1,11 @@
+squizz (0.99a-2) UNRELEASED; urgency=low
+
+ * Split debian/patches/debianpackaging into:
+ debian/patches/correct-manpages-section.patch and
+ debian/patches/disable-swissprot-test.patch for better readability.
+
+ -- Charles Plessy <plessy at debian.org> Tue, 22 Mar 2011 07:50:44 +0900
+
squizz (0.99a-1) unstable; urgency=low
* Initial release (Closes: #618689)
Copied: trunk/packages/squizz/trunk/debian/patches/correct-manpages-section.patch (from rev 6361, trunk/packages/squizz/trunk/debian/patches/debianpackaging)
===================================================================
--- trunk/packages/squizz/trunk/debian/patches/correct-manpages-section.patch (rev 0)
+++ trunk/packages/squizz/trunk/debian/patches/correct-manpages-section.patch 2011-03-21 23:17:26 UTC (rev 6364)
@@ -0,0 +1,27 @@
+Debian packaging patch, 21/03/2011 Olivier Sallou <olivier.sallou at irisa.fr>
+--- a/doc/alifmt.man
++++ b/doc/alifmt.man
+@@ -128,8 +128,8 @@
+ .rm #[ #] #H #V #F C
+ .\" ========================================================================
+ .\"
+-.IX Title "ALIFMT 1"
+-.TH ALIFMT 1 "2009-05-19" "Unix" "User Manuals"
++.IX Title "ALIFMT 5"
++.TH ALIFMT 5 "2009-05-19" "Unix" "User Manuals"
+ .SH "NAME"
+ .IP "\fBalifmt\fR \- Aligned sequences formats" 4
+ .IX Item "alifmt - Aligned sequences formats"
+--- a/doc/seqfmt.man
++++ b/doc/seqfmt.man
+@@ -128,8 +128,8 @@
+ .rm #[ #] #H #V #F C
+ .\" ========================================================================
+ .\"
+-.IX Title "SEQFMT 1"
+-.TH SEQFMT 1 "2009-05-19" "Unix" "User Manuals"
++.IX Title "SEQFMT 5"
++.TH SEQFMT 5 "2009-05-19" "Unix" "User Manuals"
+ .SH "NAME"
+ .IP "\fBseqfmt\fR \- Sequences formats" 4
+ .IX Item "seqfmt - Sequences formats"
Deleted: trunk/packages/squizz/trunk/debian/patches/debianpackaging
===================================================================
--- trunk/packages/squizz/trunk/debian/patches/debianpackaging 2011-03-21 23:07:53 UTC (rev 6363)
+++ trunk/packages/squizz/trunk/debian/patches/debianpackaging 2011-03-21 23:17:26 UTC (rev 6364)
@@ -1,91 +0,0 @@
-Debian packaging patch, 21/03/2011 Olivier Sallou <olivier.sallou at irisa.fr>
---- a/doc/alifmt.man
-+++ b/doc/alifmt.man
-@@ -128,8 +128,8 @@
- .rm #[ #] #H #V #F C
- .\" ========================================================================
- .\"
--.IX Title "ALIFMT 1"
--.TH ALIFMT 1 "2009-05-19" "Unix" "User Manuals"
-+.IX Title "ALIFMT 5"
-+.TH ALIFMT 5 "2009-05-19" "Unix" "User Manuals"
- .SH "NAME"
- .IP "\fBalifmt\fR \- Aligned sequences formats" 4
- .IX Item "alifmt - Aligned sequences formats"
---- a/doc/seqfmt.man
-+++ b/doc/seqfmt.man
-@@ -128,8 +128,8 @@
- .rm #[ #] #H #V #F C
- .\" ========================================================================
- .\"
--.IX Title "SEQFMT 1"
--.TH SEQFMT 1 "2009-05-19" "Unix" "User Manuals"
-+.IX Title "SEQFMT 5"
-+.TH SEQFMT 5 "2009-05-19" "Unix" "User Manuals"
- .SH "NAME"
- .IP "\fBseqfmt\fR \- Sequences formats" 4
- .IX Item "seqfmt - Sequences formats"
---- a/test/Makefile.am
-+++ b/test/Makefile.am
-@@ -4,7 +4,7 @@
-
- TESTS_ALIS = clustal.sh mega.sh msf.sh nexus.sh phylipi.sh phylips.sh \
- stockholm.sh
--TESTS_SEQS = embl.sh genbank.sh ig.sh raw.sh sprot.sh
-+TESTS_SEQS = embl.sh genbank.sh ig.sh raw.sh
-
- XFAIL_TESTS =
-
-@@ -16,6 +16,6 @@
- SEQS = sequence/embl.seq sequence/fasta.seq sequence/gde.seq \
- sequence/genbank.seq sequence/genpept.seq sequence/gcg.seq \
- sequence/ig.seq sequence/nbrf.seq sequence/pir.seq sequence/raw.seq \
-- sequence/refseqn.seq sequence/refseqp.seq sequence/sprot.seq
-+ sequence/refseqn.seq sequence/refseqp.seq
-
- EXTRA_DIST = $(TESTS) $(DATAS)
---- a/test/Makefile.in
-+++ b/test/Makefile.in
-@@ -178,7 +178,7 @@
- TESTS_ALIS = clustal.sh mega.sh msf.sh nexus.sh phylipi.sh phylips.sh \
- stockholm.sh
-
--TESTS_SEQS = embl.sh genbank.sh ig.sh raw.sh sprot.sh
-+TESTS_SEQS = embl.sh genbank.sh ig.sh raw.sh
- DATAS = $(ALIS) $(SEQS)
- ALIS = align/clustal.seq align/fasta.seq align/mega.seq align/msf.seq \
- align/nexusi.seq align/phylipi.seq align/phylips.seq align/stock.seq
-@@ -186,7 +186,7 @@
- SEQS = sequence/embl.seq sequence/fasta.seq sequence/gde.seq \
- sequence/genbank.seq sequence/genpept.seq sequence/gcg.seq \
- sequence/ig.seq sequence/nbrf.seq sequence/pir.seq sequence/raw.seq \
-- sequence/refseqn.seq sequence/refseqp.seq sequence/sprot.seq
-+ sequence/refseqn.seq sequence/refseqp.seq
-
- EXTRA_DIST = $(TESTS) $(DATAS)
- all: all-am
---- a/test/convseq.sh
-+++ b/test/convseq.sh
-@@ -7,7 +7,7 @@
-
- ## Sequence files location
- seqdir=$srcdir/sequence
--seqlist='embl.seq fasta.seq gcg.seq gde.seq genbank.seq genpept.seq ig.seq nbrf.seq pir.seq raw.seq refseqn.seq refseqp.seq sprot.seq'
-+seqlist='embl.seq fasta.seq gcg.seq gde.seq genbank.seq genpept.seq ig.seq nbrf.seq pir.seq raw.seq refseqn.seq refseqp.seq'
-
- ## Checks EMBL-like sequence
- for f in $seqlist; do
---- a/test/fmtseq.sh
-+++ b/test/fmtseq.sh
-@@ -60,11 +60,6 @@
- (../src/squizz $srcdir/$f 2>&1 | grep -v RAW) && exit 1
- done
-
--## Checks SWISSPROT-like sequence
--seqlist='sprot.seq'
--for f in $seqlist; do
-- (../src/squizz $srcdir/$f 2>&1 | grep -v SWISSPROT) && exit 1
--done
-
- exit 0
-
Copied: trunk/packages/squizz/trunk/debian/patches/disable-swissprot-test.patch (from rev 6361, trunk/packages/squizz/trunk/debian/patches/debianpackaging)
===================================================================
--- trunk/packages/squizz/trunk/debian/patches/disable-swissprot-test.patch (rev 0)
+++ trunk/packages/squizz/trunk/debian/patches/disable-swissprot-test.patch 2011-03-21 23:17:26 UTC (rev 6364)
@@ -0,0 +1,65 @@
+Debian packaging patch, 21/03/2011 Olivier Sallou <olivier.sallou at irisa.fr>
+--- a/test/Makefile.am
++++ b/test/Makefile.am
+@@ -4,7 +4,7 @@
+
+ TESTS_ALIS = clustal.sh mega.sh msf.sh nexus.sh phylipi.sh phylips.sh \
+ stockholm.sh
+-TESTS_SEQS = embl.sh genbank.sh ig.sh raw.sh sprot.sh
++TESTS_SEQS = embl.sh genbank.sh ig.sh raw.sh
+
+ XFAIL_TESTS =
+
+@@ -16,6 +16,6 @@
+ SEQS = sequence/embl.seq sequence/fasta.seq sequence/gde.seq \
+ sequence/genbank.seq sequence/genpept.seq sequence/gcg.seq \
+ sequence/ig.seq sequence/nbrf.seq sequence/pir.seq sequence/raw.seq \
+- sequence/refseqn.seq sequence/refseqp.seq sequence/sprot.seq
++ sequence/refseqn.seq sequence/refseqp.seq
+
+ EXTRA_DIST = $(TESTS) $(DATAS)
+--- a/test/Makefile.in
++++ b/test/Makefile.in
+@@ -178,7 +178,7 @@
+ TESTS_ALIS = clustal.sh mega.sh msf.sh nexus.sh phylipi.sh phylips.sh \
+ stockholm.sh
+
+-TESTS_SEQS = embl.sh genbank.sh ig.sh raw.sh sprot.sh
++TESTS_SEQS = embl.sh genbank.sh ig.sh raw.sh
+ DATAS = $(ALIS) $(SEQS)
+ ALIS = align/clustal.seq align/fasta.seq align/mega.seq align/msf.seq \
+ align/nexusi.seq align/phylipi.seq align/phylips.seq align/stock.seq
+@@ -186,7 +186,7 @@
+ SEQS = sequence/embl.seq sequence/fasta.seq sequence/gde.seq \
+ sequence/genbank.seq sequence/genpept.seq sequence/gcg.seq \
+ sequence/ig.seq sequence/nbrf.seq sequence/pir.seq sequence/raw.seq \
+- sequence/refseqn.seq sequence/refseqp.seq sequence/sprot.seq
++ sequence/refseqn.seq sequence/refseqp.seq
+
+ EXTRA_DIST = $(TESTS) $(DATAS)
+ all: all-am
+--- a/test/convseq.sh
++++ b/test/convseq.sh
+@@ -7,7 +7,7 @@
+
+ ## Sequence files location
+ seqdir=$srcdir/sequence
+-seqlist='embl.seq fasta.seq gcg.seq gde.seq genbank.seq genpept.seq ig.seq nbrf.seq pir.seq raw.seq refseqn.seq refseqp.seq sprot.seq'
++seqlist='embl.seq fasta.seq gcg.seq gde.seq genbank.seq genpept.seq ig.seq nbrf.seq pir.seq raw.seq refseqn.seq refseqp.seq'
+
+ ## Checks EMBL-like sequence
+ for f in $seqlist; do
+--- a/test/fmtseq.sh
++++ b/test/fmtseq.sh
+@@ -60,11 +60,6 @@
+ (../src/squizz $srcdir/$f 2>&1 | grep -v RAW) && exit 1
+ done
+
+-## Checks SWISSPROT-like sequence
+-seqlist='sprot.seq'
+-for f in $seqlist; do
+- (../src/squizz $srcdir/$f 2>&1 | grep -v SWISSPROT) && exit 1
+-done
+
+ exit 0
+
Modified: trunk/packages/squizz/trunk/debian/patches/series
===================================================================
--- trunk/packages/squizz/trunk/debian/patches/series 2011-03-21 23:07:53 UTC (rev 6363)
+++ trunk/packages/squizz/trunk/debian/patches/series 2011-03-21 23:17:26 UTC (rev 6364)
@@ -1 +1,2 @@
-debianpackaging
+correct-manpages-section.patch
+disable-swissprot-test.patch
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