[med-svn] [SCM] pysam branch, master, updated. upstream/0.3.1-18-gb0ed413

[Charles Plessy]

The following commit has been merged in the master branch:
commit b0ed413331affeafbb20fb4b1aaf74aff8a8dfbf
Author: Charles Plessy <plessy at debian.org>
Date:   Tue Mar 29 14:21:00 2011 +0900

     # Small progresses on collation of copyright notices and license statements.

diff --git a/debian/copyright b/debian/copyright
index ecea701..aba709b 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -1,7 +1,11 @@
-Name: Pysam
+Format: http://dep.debian.net/deps/dep5/
 Source: http://pysam.googlecode.com/files/pysam-0.3.1.tar.gz
+
+Files: *
 Copyright: © 2008-2009 Genome Research Ltd.
 License: MIT
+
+License: MIT
  Permission is hereby granted, free of charge, to any person obtaining a copy
  of this software and associated documentation files (the "Software"), to deal
  in the Software without restriction, including without limitation the rights
@@ -26,3 +30,35 @@ DRAFT
 =====
 
 The copyright of samtools and tabix must be documented as well !
+
+Files: samtools/bam.h samtools/faidx.h samtools/khash.h samtools/kseq.h samtools/ksort.h tabix/khash.h tabix/knetfile.c.pysam.c tabix/ksort.h tabix/tabix.h
+Copyright: 2008-2010 Genome Research Ltd (GRL).
+
+Files: samtools/bcftools/bcf.h
+Copyright: (c) 2010 Broad Institute
+
+Files: samtools/bgzf.c.pysam.c samtools/bgzf.h tabix/bgzf.c.pysam.c tabix/bgzf.h tabix/bgzip.c.pysam.c
+Copyright: 2008 Broad Institute / Massachusetts Institute of Technology
+
+samtools/faidx.h:  @copyright The Wellcome Trust Sanger Institute.
+
+Files: samtools/kaln.c.pysam.c samtools/kaln.h samtools/kprobaln.h
+Copyright: 2003-2006, 2008, 2009, by Heng Li <lh3lh3 at gmail.com>
+
+samtools/khash.h:  @copyright Heng Li
+
+Files: samtools/knetfile.c.pysam.c
+Copyright: (c) 2008 Genome Research Ltd (GRL).
+ 2003-2006, 2008-2010, by Heng Li <lh3lh3 at live.co.uk>
+
+Files: samtools/razf.c.pysam.c samtools/razf.h
+Copyright:  2008, Jue Ruan <ruanjue at gmail.com>, Heng Li <lh3 at sanger.ac.uk>
+
+samtools/sam.h:  @copyright Genome Research Ltd.
+
+samtools/win32/zconf.h: * Copyright (C) 1995-2005 Jean-loup Gailly.
+samtools/win32/zconf.h: * For conditions of distribution and use, see copyright notice in zlib.h
+samtools/win32/zconf.h:#   pragma map(inflate_copyright,"INCOPY")
+samtools/win32/zlib.h:  Copyright (C) 1995-2005 Jean-loup Gailly and Mark Adler
+
+tabix/khash.h:  @copyright Heng Li

-- 
interface for the SAM/BAM sequence alignment and mapping format