[med-svn] r7737 - in trunk/packages: . jai-imageio-core jai-imageio-core/trunk jai-imageio-core/trunk/debian jai-imageio-core/trunk/debian/patches jai-imageio-core/trunk/debian/source

Mathieu Malaterre malat-guest at alioth.debian.org
Mon Sep 12 08:05:55 UTC 2011 

Author: malat-guest
Date: 2011-09-12 08:05:54 +0000 (Mon, 12 Sep 2011)
New Revision: 7737

Added:
   trunk/packages/jai-imageio-core/
   trunk/packages/jai-imageio-core/trunk/
   trunk/packages/jai-imageio-core/trunk/debian/
   trunk/packages/jai-imageio-core/trunk/debian/changelog
   trunk/packages/jai-imageio-core/trunk/debian/compat
   trunk/packages/jai-imageio-core/trunk/debian/control
   trunk/packages/jai-imageio-core/trunk/debian/copyright
   trunk/packages/jai-imageio-core/trunk/debian/get-orig-source
   trunk/packages/jai-imageio-core/trunk/debian/libbio-formats-java-doc.javadoc
   trunk/packages/jai-imageio-core/trunk/debian/libbio-formats-java.jlibs
   trunk/packages/jai-imageio-core/trunk/debian/patches/
   trunk/packages/jai-imageio-core/trunk/debian/patches/series
   trunk/packages/jai-imageio-core/trunk/debian/rules
   trunk/packages/jai-imageio-core/trunk/debian/source/
   trunk/packages/jai-imageio-core/trunk/debian/source/format
   trunk/packages/jai-imageio-core/trunk/debian/watch
Log:
Initial import of jai-imageio-core

Added: trunk/packages/jai-imageio-core/trunk/debian/changelog
===================================================================
--- trunk/packages/jai-imageio-core/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/jai-imageio-core/trunk/debian/changelog	2011-09-12 08:05:54 UTC (rev 7737)
@@ -0,0 +1,5 @@
+jai-imageio-core (1.1-1) unstable; urgency=low
+
+  * Initial Debian Upload (Closes: #??????)
+
+ -- Mathieu Malaterre <mathieu.malaterre at gmail.com>  Mon, 12 Sep 2011 09:56:16 +0200

Added: trunk/packages/jai-imageio-core/trunk/debian/compat
===================================================================
--- trunk/packages/jai-imageio-core/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/jai-imageio-core/trunk/debian/compat	2011-09-12 08:05:54 UTC (rev 7737)
@@ -0,0 +1 @@
+8

Added: trunk/packages/jai-imageio-core/trunk/debian/control
===================================================================
--- trunk/packages/jai-imageio-core/trunk/debian/control	                        (rev 0)
+++ trunk/packages/jai-imageio-core/trunk/debian/control	2011-09-12 08:05:54 UTC (rev 7737)
@@ -0,0 +1,26 @@
+Source: jai-imageio-core
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Mathieu Malaterre <mathieu.malaterre at gmail.com>
+Build-Depends: debhelper (>= 8), javahelper (>=0.25)
+Build-Depends-Indep: default-jdk, default-jdk-doc, ant
+Standards-Version: 3.9.2
+Section: java
+Homepage: http://java.net/projects/jai-imageio-core/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/jai-imageio-core/trunk/
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/jai-imageio-core/trunk/
+
+
+Package: libjai-imageio-core-java
+Architecture: all
+Depends: ${java:Depends}, ${misc:Depends}
+Recommends: ${java:Recommends}
+Description: Java Evolutionary Biology Library 
+ A Java library for evolutionary biology and bioinformatics, including
+ objects representing biomolecular sequences, multiple sequence
+ alignments and phylogenetic trees.
+ .
+ This is a branch of the original JEBL on
+ http://sourceforge.net/projects/jebl/ to develop a new API and class
+ library.

Added: trunk/packages/jai-imageio-core/trunk/debian/copyright
===================================================================
--- trunk/packages/jai-imageio-core/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/jai-imageio-core/trunk/debian/copyright	2011-09-12 08:05:54 UTC (rev 7737)
@@ -0,0 +1,28 @@
+Format: http://dep.debian.net/deps/dep5/
+Upstream-Name: JEBL
+Upstream-Contact: Andrew Rambaut <a.rambaut at ed.ac.uk>
+Source: http://code.google.com/p/jebl2/source/checkout
+
+Files: *
+Copyright: © 2009-2010 Andrew Rambaut <a.rambaut at ed.ac.uk>
+Licence: LGPL-3+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU Lesser General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU Lesser General Public License for more details.
+ .
+ You should have received a copy of the GNU Lesser General Public License
+ along with this program.  If not, see <http://www.gnu.org/licenses/>.
+Comment:
+ On Debian systems, you can read the full text of the GNU Lesser General Public
+ License in ‘/usr/share/common-licenses/LGPL-3’.
+
+Files: debian/*
+Copyright: © 2011 Andreas Tille <tille at debian.org>
+License: PD
+ The packaging work is in the public domain unless stated otherwise.

Added: trunk/packages/jai-imageio-core/trunk/debian/get-orig-source
===================================================================
--- trunk/packages/jai-imageio-core/trunk/debian/get-orig-source	                        (rev 0)
+++ trunk/packages/jai-imageio-core/trunk/debian/get-orig-source	2011-09-12 08:05:54 UTC (rev 7737)
@@ -0,0 +1,30 @@
+#!/bin/sh
+set -ex
+
+PACKAGE=jai-imageio-core
+
+VERSION=${VERSION:-$2}
+TARFILE=${TARFILE:-$3}
+
+if [ -z ${VERSION}]; then
+VERSION=`dpkg-parsechangelog | sed -n -e 's/^Version: \(.*\)-[^-]*$/\1/p'`
+fi
+
+REVISION=`echo $VERSION | sed -e 's/^.*svn//g'`
+
+
+if [ -z ${TARFILE}]; then
+TARFILE=${PACKAGE}_${VERSION}.orig.tar.gz
+fi
+
+FOLDER=${PACKAGE}-${VERSION}
+
+# rev 254 is somewhat old. is project still alive ?
+# Last Changed Date: 2008-07-24 21:15:22 +0200 (Thu, 24 Jul 2008)
+svn export -r 254 https://svn.java.net/svn/jai-imageio-core~svn/trunk ${FOLDER}
+# only keep the linux shared libs:
+rm -rf ${FOLDER}/src/share/jclib4jai/windows
+rm -rf ${FOLDER}/src/share/jclib4jai/solaris
+
+GZIP="--best --no-name" tar czf ${TARFILE} ${FOLDER}
+rm -rf ${FOLDER}


Property changes on: trunk/packages/jai-imageio-core/trunk/debian/get-orig-source
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/jai-imageio-core/trunk/debian/libbio-formats-java-doc.javadoc
===================================================================
--- trunk/packages/jai-imageio-core/trunk/debian/libbio-formats-java-doc.javadoc	                        (rev 0)
+++ trunk/packages/jai-imageio-core/trunk/debian/libbio-formats-java-doc.javadoc	2011-09-12 08:05:54 UTC (rev 7737)
@@ -0,0 +1 @@
+doc /usr/share/doc/libjebl2-java/api

Added: trunk/packages/jai-imageio-core/trunk/debian/libbio-formats-java.jlibs
===================================================================
--- trunk/packages/jai-imageio-core/trunk/debian/libbio-formats-java.jlibs	                        (rev 0)
+++ trunk/packages/jai-imageio-core/trunk/debian/libbio-formats-java.jlibs	2011-09-12 08:05:54 UTC (rev 7737)
@@ -0,0 +1 @@
+dist/*.jar

Added: trunk/packages/jai-imageio-core/trunk/debian/patches/series
===================================================================
Added: trunk/packages/jai-imageio-core/trunk/debian/rules
===================================================================
--- trunk/packages/jai-imageio-core/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/jai-imageio-core/trunk/debian/rules	2011-09-12 08:05:54 UTC (rev 7737)
@@ -0,0 +1,9 @@
+#!/usr/bin/make -f
+
+JAVA_HOME=/usr/lib/jvm/default-java
+
+%:
+	dh $@ --with javahelper
+
+get-orig-source:
+	./debian/get-orig-source


Property changes on: trunk/packages/jai-imageio-core/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/jai-imageio-core/trunk/debian/source/format
===================================================================
--- trunk/packages/jai-imageio-core/trunk/debian/source/format	                        (rev 0)
+++ trunk/packages/jai-imageio-core/trunk/debian/source/format	2011-09-12 08:05:54 UTC (rev 7737)
@@ -0,0 +1 @@
+3.0 (quilt)

Added: trunk/packages/jai-imageio-core/trunk/debian/watch
===================================================================
--- trunk/packages/jai-imageio-core/trunk/debian/watch	                        (rev 0)
+++ trunk/packages/jai-imageio-core/trunk/debian/watch	2011-09-12 08:05:54 UTC (rev 7737)
@@ -0,0 +1,3 @@
+# TODO need to check git tag since there is no upstream tarball
+# we could check binary release to get the version right
+# http://www.loci.wisc.edu/bio-formats/source-code

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