[med-svn] [SCM] tophat branch, master, updated. upstream/1.3.3-24-g7be6412

[Carlos Borroto]

The following commit has been merged in the master branch:
commit 7b77a9586a1d9703208d475f00c6452b736b4944
Merge: 4171660397c90257b3ea110df0c855fff4bf69f9 b911a2571a18bf8935c2d1e984d533ec2a968d61
Author: Carlos Borroto <carlos.borroto at gmail.com>
Date:   Tue Jan 10 11:49:16 2012 -0500

    Merge commit 'upstream/1.4.0'


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A spliced read mapper for RNA-Seq