[med-svn] r11592 - in trunk/packages/rostlab/libzerg/trunk/debian: . patches

[Laszlo Kajan]

Author: lkajan-guest
Date: 2012-07-06 13:55:27 +0000 (Fri, 06 Jul 2012)
New Revision: 11592

Modified:
   trunk/packages/rostlab/libzerg/trunk/debian/changelog
   trunk/packages/rostlab/libzerg/trunk/debian/control
   trunk/packages/rostlab/libzerg/trunk/debian/patches/autotools
   trunk/packages/rostlab/libzerg/trunk/debian/patches/blastpgp
   trunk/packages/rostlab/libzerg/trunk/debian/patches/save_makefile.patch
   trunk/packages/rostlab/libzerg/trunk/debian/rules
Log:
added hardening flags; added annotation to patches; bumped standards version

Modified: trunk/packages/rostlab/libzerg/trunk/debian/changelog
===================================================================
--- trunk/packages/rostlab/libzerg/trunk/debian/changelog	2012-07-06 12:27:02 UTC (rev 11591)
+++ trunk/packages/rostlab/libzerg/trunk/debian/changelog	2012-07-06 13:55:27 UTC (rev 11592)
@@ -1,12 +1,15 @@
-libzerg (1.0.7-5) UNRELEASED; urgency=low
+libzerg (1.0.7-5) unstable; urgency=low
 
-  * debian/upstream:
+  * [Andreas Tille] debian/upstream:
      - Added URL + eprint
      - Moved DOI to references
      - Make author field BibTeX compliant
 
- -- Andreas Tille <tille at debian.org>  Mon, 07 May 2012 23:39:21 +0200
+  [Laszlo Kajan]
+  * Removing non-policy-compliant get-orig-source target from debian/rules.
 
+ -- Laszlo Kajan <lkajan at rostlab.org>  Fri, 06 Jul 2012 15:35:05 +0200
+
 libzerg (1.0.7-4) unstable; urgency=low
 
   * Fixed svn-buildpackage issue on unstable by saving original make file

Modified: trunk/packages/rostlab/libzerg/trunk/debian/control
===================================================================
--- trunk/packages/rostlab/libzerg/trunk/debian/control	2012-07-06 12:27:02 UTC (rev 11591)
+++ trunk/packages/rostlab/libzerg/trunk/debian/control	2012-07-06 13:55:27 UTC (rev 11592)
@@ -5,7 +5,7 @@
 Uploaders: Laszlo Kajan <lkajan at rostlab.org>,
  Andreas Tille <tille at debian.org>
 Build-Depends: debhelper (>= 7.0.50~), dh-autoreconf, flex, perl
-Standards-Version: 3.9.2
+Standards-Version: 3.9.3
 Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/rostlab/libzerg/trunk/
 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/rostlab/libzerg/trunk/
 DM-Upload-Allowed: yes
@@ -33,7 +33,7 @@
 Section: libdevel
 Depends: libzerg0 (= ${binary:Version}), ${misc:Depends}
 Provides: libzerg-dev
-Description: C library for lexically scanning the output of NCBI BLAST programs
+Description: development libraries and header files for libzerg
  Zerg is a C library for lexing - lexically scanning - the output of NCBI
  BLAST programs.
  .
@@ -50,7 +50,9 @@
 Package: libzerg0-dbg
 Architecture: any
 Section: debug
-Priority: extra
 Depends: libzerg0 (= ${binary:Version}), ${misc:Depends}
 Description: debugging symbols for libzerg
- This package provides the detached debug symbols for libzerg.
+ Zerg is a C library for lexing - lexically scanning - the output of NCBI
+ BLAST programs.
+ .
+ This package provides the detached debug symbols.

Modified: trunk/packages/rostlab/libzerg/trunk/debian/patches/autotools
===================================================================
--- trunk/packages/rostlab/libzerg/trunk/debian/patches/autotools	2012-07-06 12:27:02 UTC (rev 11591)
+++ trunk/packages/rostlab/libzerg/trunk/debian/patches/autotools	2012-07-06 13:55:27 UTC (rev 11592)
@@ -1,3 +1,8 @@
+Author: Laszlo Kajan <lkajan at rostlab.org>
+Description: use autotools build system
+ Upstream uses a simple Makefile.
+Forwarded: no
+
 --- /dev/null
 +++ libzerg/AUTHORS
 @@ -0,0 +1 @@

Modified: trunk/packages/rostlab/libzerg/trunk/debian/patches/blastpgp
===================================================================
--- trunk/packages/rostlab/libzerg/trunk/debian/patches/blastpgp	2012-07-06 12:27:02 UTC (rev 11591)
+++ trunk/packages/rostlab/libzerg/trunk/debian/patches/blastpgp	2012-07-06 13:55:27 UTC (rev 11592)
@@ -1,3 +1,7 @@
+Author: Laszlo Kajan <lkajan at rostlab.org>
+Description: patch to handle iterated blast
+Forwarded: no
+
 --- libzerg.orig/zerglexer.lex
 +++ libzerg/zerglexer.lex
 @@ -35,10 +35,11 @@

Modified: trunk/packages/rostlab/libzerg/trunk/debian/patches/save_makefile.patch
===================================================================
--- trunk/packages/rostlab/libzerg/trunk/debian/patches/save_makefile.patch	2012-07-06 12:27:02 UTC (rev 11591)
+++ trunk/packages/rostlab/libzerg/trunk/debian/patches/save_makefile.patch	2012-07-06 13:55:27 UTC (rev 11592)
@@ -1,5 +1,5 @@
 Author: Andreas Tille <tille at debian.org> and Laszlo Kajan <lkajan at rostlab.org>
-Description: Save original Makefile to enable proper restauration of original state
+Description: Save original Makefile to enable proper restoration of original state
 
 --- /dev/null
 +++ libzerg/Makefile.libzerg-orig

Modified: trunk/packages/rostlab/libzerg/trunk/debian/rules
===================================================================
--- trunk/packages/rostlab/libzerg/trunk/debian/rules	2012-07-06 12:27:02 UTC (rev 11591)
+++ trunk/packages/rostlab/libzerg/trunk/debian/rules	2012-07-06 13:55:27 UTC (rev 11592)
@@ -1,7 +1,12 @@
 #!/usr/bin/make -f
 
+export CPPFLAGS:=$(shell dpkg-buildflags --get CPPFLAGS)
+export CFLAGS:=$(shell dpkg-buildflags --get CFLAGS)
+export CXXFLAGS:=$(shell dpkg-buildflags --get CXXFLAGS)
+export LDFLAGS:=$(shell dpkg-buildflags --get LDFLAGS)
+
 # Uncomment this to turn on verbose mode.
-export DH_VERBOSE=1
+#export DH_VERBOSE=1
 
 %:
 	dh --with autoreconf $@ 
@@ -14,7 +19,3 @@
 .PHONY: override_dh_strip
 override_dh_strip:
 	dh_strip --dbg-package=libzerg0-dbg
-
-get-orig-source:
-	mkdir -p ../tarballs
-	uscan --verbose --force-download --destdir=../tarballs