[med-svn] r11206 - in trunk/packages/gmod: . apollo apollo/trunk apollo/trunk/debian

[Andreas Tille]

Author: tille
Date: 2012-06-05 07:09:56 +0000 (Tue, 05 Jun 2012)
New Revision: 11206

Added:
   trunk/packages/gmod/apollo/
   trunk/packages/gmod/apollo/trunk/
   trunk/packages/gmod/apollo/trunk/debian/
   trunk/packages/gmod/apollo/trunk/debian/changelog
   trunk/packages/gmod/apollo/trunk/debian/compat
   trunk/packages/gmod/apollo/trunk/debian/control
   trunk/packages/gmod/apollo/trunk/debian/copyright
   trunk/packages/gmod/apollo/trunk/debian/rules
   trunk/packages/gmod/apollo/trunk/debian/upstream
Log:
Add content of apollo in task file as machine readable packagig files


Added: trunk/packages/gmod/apollo/trunk/debian/changelog
===================================================================
--- trunk/packages/gmod/apollo/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/gmod/apollo/trunk/debian/changelog	2012-06-05 07:09:56 UTC (rev 11206)
@@ -0,0 +1,6 @@
+apollo (1.11.6-1) UNRELEASED; urgency=low
+
+  * Initial release
+
+ -- Andreas Tille <tille at debian.org>  Tue, 05 Jun 2012 08:56:49 +0200
+

Added: trunk/packages/gmod/apollo/trunk/debian/compat
===================================================================
--- trunk/packages/gmod/apollo/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/gmod/apollo/trunk/debian/compat	2012-06-05 07:09:56 UTC (rev 11206)
@@ -0,0 +1 @@
+9

Added: trunk/packages/gmod/apollo/trunk/debian/control
===================================================================
--- trunk/packages/gmod/apollo/trunk/debian/control	                        (rev 0)
+++ trunk/packages/gmod/apollo/trunk/debian/control	2012-06-05 07:09:56 UTC (rev 11206)
@@ -0,0 +1,27 @@
+Source: apollo
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 9)
+Standards-Version: 3.9.3
+Homepage: http://gmod.org/wiki/Apollo
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/gmod/apollo/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/gmod/apollo/trunk/
+
+Package: apollo
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: genome annotation viewer and editor
+ Apollo is a genome annotation viewer and editor. It was developed as a
+ collaboration between the Berkeley Drosophila Genome Project (part of
+ the FlyBase consortium) and The Sanger Institute in Cambridge, UK.
+ Apollo allows researchers to explore genomic annotations at many levels
+ of detail, and to perform expert annotation curation, all in a graphical
+ environment. It was used by the FlyBase biologists to construct the
+ Release 3 annotations on the finished Drosophila melanogaster genome,
+ and is also a primary vehicle for sharing these annotations with the
+ community. The Generic Model Organism Database (GMOD) project, which
+ aims to provide a complete ready-to-use toolkit for analyzing whole
+ genomes, has adopted Apollo as its annotation workbench.

Added: trunk/packages/gmod/apollo/trunk/debian/copyright
===================================================================
--- trunk/packages/gmod/apollo/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/gmod/apollo/trunk/debian/copyright	2012-06-05 07:09:56 UTC (rev 11206)
@@ -0,0 +1,11 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: Apollo
+Source: http://apollo.berkeleybop.org/current/install.html
+
+Files: *
+Copyright: © 2002-2010 <upstream>
+License: Artistic
+
+Files: debian/*
+Copyright: © 2012 Andreas Tille <tille at debian.org>
+License: Artistic

Added: trunk/packages/gmod/apollo/trunk/debian/rules
===================================================================
--- trunk/packages/gmod/apollo/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/gmod/apollo/trunk/debian/rules	2012-06-05 07:09:56 UTC (rev 11206)
@@ -0,0 +1,6 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+
+%:
+	dh $@


Property changes on: trunk/packages/gmod/apollo/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/gmod/apollo/trunk/debian/upstream
===================================================================
--- trunk/packages/gmod/apollo/trunk/debian/upstream	                        (rev 0)
+++ trunk/packages/gmod/apollo/trunk/debian/upstream	2012-06-05 07:09:56 UTC (rev 11206)
@@ -0,0 +1,12 @@
+Reference:
+  Author: S E Lewis and S M J Searle and N Harris and M Gibson and V Lyer and J Richter and C Wiel and L Bayraktaroglir and E Birney and M A Crosby and J S Kaminker and B B Matthews and S E Prochnik and C D Smithy and J L Tupy and G M Rubin and S Misra and C J Mungall and M E Clamp
+  Title: "Apollo: a sequence annotation editor"
+  Journal: Genome Biology
+  Year: 2002
+  Volume: 3
+  Number: 12
+  Pages: research0082-0082.14
+  DOI: 10.1186/gb-2002-3-12-research0082
+  PMID: 12537571
+  URL: http://genomebiology.com/2002/3/12/research/0082
+  eprint: http://genomebiology.com/content/pdf/gb-2002-3-12-research0082.pdf