[med-svn] [SCM] r-bioc-biocgenerics.git branch, master, updated. upstream/0.2.0-5-gd55bf10

Tue Jun 12 09:59:18 UTC 2012

The following commit has been merged in the master branch:
commit 3dc4c1161fdb1dcdf89eb660b9f17d169703ef44
Author: Andreas Tille <tille at debian.org>
Date:   Tue Jun 12 11:14:05 2012 +0200

    Updated debian/copyright

diff --git a/debian/copyright b/debian/copyright
index 374e262..d4f5c73 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -1,20 +1,180 @@
-Format: http://dep.debian.net/deps/dep5
-Upstream-Name: biostrings
-Source: <url://example.com>
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: BiocGenerics
+Source: http://www.bioconductor.org/packages/release/bioc/src/contrib/BiocGenerics_0.2.0.tar.gz
 
 Files: *
-Copyright: <years> <put author's name and email here>
-           <years> <likewise for another author>
-License: <special license>
- <Put the license of the package here indented by 1 space>
- <This follows the format of Description: lines in control file>
+Copyright: 2010-2012 The Bioconductor Dev Team
+License: Artistic-2.0
+ Preamble
  .
- <Including paragraphs>
+ This license establishes the terms under which a given free software Package
+ may be copied, modified, distributed, and/or redistributed. The intent is that
+ the Copyright Holder maintains some artistic control over the development of
+ that Package while still keeping the Package available as open source and free
+ software.
+ .
+ You are always permitted to make arrangements wholly outside of this license
+ directly with the Copyright Holder of a given Package. If the terms of this
+ license do not permit the full use that you propose to make of the Package, you
+ should contact the Copyright Holder and seek a different licensing arrangement.
+ .
+ Definitions
+ .
+ "Copyright Holder" means the individual(s) or organization(s) named in the
+ copyright notice for the entire Package.
+ .
+ "Contributor" means any party that has contributed code or other material to
+ the Package, in accordance with the Copyright Holder's procedures.
+ .
+ "You" and "your" means any person who would like to copy, distribute, or modify
+ the Package.
+ .
+ "Package" means the collection of files distributed by the Copyright Holder,
+ and derivatives of that collection and/or of those files. A given Package may
+ consist of either the Standard Version, or a Modified Version.
+ .
+ "Distribute" means providing a copy of the Package or making it accessible to
+ anyone else, or in the case of a company or organization, to others outside of
+ your company or organization.
+ .
+ "Distributor Fee" means any fee that you charge for Distributing this Package
+ or providing support for this Package to another party. It does not mean
+ licensing fees.
+ .
+ "Standard Version" refers to the Package if it has not been modified, or has
+ been modified only in ways explicitly requested by the Copyright Holder.
+ .
+ "Modified Version" means the Package, if it has been changed, and such changes
+ were not explicitly requested by the Copyright Holder.
+ .
+ "Original License" means this Artistic License as Distributed with the Standard
+ Version of the Package, in its current version or as it may be modified by The
+ Perl Foundation in the future.
+ .
+ "Source" form means the source code, documentation source, and configuration
+ files for the Package.
+ .
+ "Compiled" form means the compiled bytecode, object code, binary, or any other
+ form resulting from mechanical transformation or translation of the Source
+ form.
+ .
+ Permission for Use and Modification Without Distribution
+ .
+ (1) You are permitted to use the Standard Version and create and use Modified
+ Versions for any purpose without restriction, provided that you do not
+ Distribute the Modified Version.
+ .
+ Permissions for Redistribution of the Standard Version
+ .
+ (2) You may Distribute verbatim copies of the Source form of the Standard
+ Version of this Package in any medium without restriction, either gratis or for
+ a Distributor Fee, provided that you duplicate all of the original copyright
+ notices and associated disclaimers. At your discretion, such verbatim copies
+ may or may not include a Compiled form of the Package.
+ .
+ (3) You may apply any bug fixes, portability changes, and other modifications
+ made available from the Copyright Holder. The resulting Package will still be
+ considered the Standard Version, and as such will be subject to the Original
+ License.
+ .
+ Distribution of Modified Versions of the Package as Source
+ .
+ (4) You may Distribute your Modified Version as Source (either gratis or for a
+ Distributor Fee, and with or without a Compiled form of the Modified Version)
+ provided that you clearly document how it differs from the Standard Version,
+ including, but not limited to, documenting any non-standard features,
+ executables, or modules, and provided that you do at least ONE of the
+ following:
+ .
+ (a) make the Modified Version available to the Copyright Holder of the Standard
+ Version, under the Original License, so that the Copyright Holder may include
+ your modifications in the Standard Version.
+ (b) ensure that installation of your Modified Version does not prevent the user
+ installing or running the Standard Version. In addition, the Modified Version
+ must bear a name that is different from the name of the Standard Version.
+ (c) allow anyone who receives a copy of the Modified Version to make the Source
+ form of the Modified Version available to others under
+ (i) the Original License or
+ (ii) a license that permits the licensee to freely copy, modify and
+ redistribute the Modified Version using the same licensing terms that apply to
+ the copy that the licensee received, and requires that the Source form of the
+ Modified Version, and of any works derived from it, be made freely available in
+ that license fees are prohibited but Distributor Fees are allowed.
+ .
+ Distribution of Compiled Forms of the Standard Version or Modified Versions
+ without the Source
+ .
+ (5) You may Distribute Compiled forms of the Standard Version without the
+ Source, provided that you include complete instructions on how to get the
+ Source of the Standard Version. Such instructions must be valid at the time of
+ your distribution. If these instructions, at any time while you are carrying
+ out such distribution, become invalid, you must provide new instructions on
+ demand or cease further distribution. If you provide valid instructions or
+ cease distribution within thirty days after you become aware that the
+ instructions are invalid, then you do not forfeit any of your rights under this
+ license.
+ .
+ (6) You may Distribute a Modified Version in Compiled form without the Source,
+ provided that you comply with Section 4 with respect to the Source of the
+ Modified Version.
+ .
+ Aggregating or Linking the Package
+ .
+ (7) You may aggregate the Package (either the Standard Version or Modified
+ Version) with other packages and Distribute the resulting aggregation provided
+ that you do not charge a licensing fee for the Package. Distributor Fees are
+ permitted, and licensing fees for other components in the aggregation are
+ permitted. The terms of this license apply to the use and Distribution of the
+ Standard or Modified Versions as included in the aggregation.
+ .
+ (8) You are permitted to link Modified and Standard Versions with other works,
+ to embed the Package in a larger work of your own, or to build stand-alone
+ binary or bytecode versions of applications that include the Package, and
+ Distribute the result without restriction, provided the result does not expose
+ a direct interface to the Package.
+ .
+ Items That are Not Considered Part of a Modified Version
+ .
+ (9) Works (including, but not limited to, modules and scripts) that merely
+ extend or make use of the Package, do not, by themselves, cause the Package to
+ be a Modified Version. In addition, such works are not considered parts of the
+ Package itself, and are not subject to the terms of this license.
+ .
+ General Provisions
+ .
+ (10) Any use, modification, and distribution of the Standard or Modified
+ Versions is governed by this Artistic License. By using, modifying or
+ distributing the Package, you accept this license. Do not use, modify, or
+ distribute the Package, if you do not accept this license.
+ .
+ (11) If your Modified Version has been derived from a Modified Version made by
+ someone other than you, you are nevertheless required to ensure that your
+ Modified Version complies with the requirements of this license.
+ .
+ (12) This license does not grant you the right to use any trademark, service
+ mark, tradename, or logo of the Copyright Holder.
+ .
+ (13) This license includes the non-exclusive, worldwide, free-of-charge patent
+ license to make, have made, use, offer to sell, sell, import and otherwise
+ transfer the Package with respect to any patent claims licensable by the
+ Copyright Holder that are necessarily infringed by the Package. If you
+ institute patent litigation (including a cross-claim or counterclaim) against
+ any party alleging that the Package constitutes direct or contributory patent
+ infringement, then this Artistic License to you shall terminate on the date
+ that such litigation is filed.
+ .
+ (14) Disclaimer of Warranty: THE PACKAGE IS PROVIDED BY THE COPYRIGHT HOLDER
+ AND CONTRIBUTORS "AS IS' AND WITHOUT ANY EXPRESS OR IMPLIED WARRANTIES. THE
+ IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, OR
+ NON-INFRINGEMENT ARE DISCLAIMED TO THE EXTENT PERMITTED BY YOUR LOCAL LAW.
+ UNLESS REQUIRED BY LAW, NO COPYRIGHT HOLDER OR CONTRIBUTOR WILL BE LIABLE FOR
+ ANY DIRECT, INDIRECT, INCIDENTAL, OR CONSEQUENTIAL DAMAGES ARISING IN ANY WAY
+ OUT OF THE USE OF THE PACKAGE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
+ DAMAGE.
 
-# If you want to use GPL v2 or later for the /debian/* files use 
-# the following clauses, or change it to suit. Delete these two lines
 Files: debian/*
-Copyright: 2011 Charles Plessy <plessy at debian.org>
+Copyright: 2012 Charles Plessy <plessy at debian.org>
+                Andreas Tille <tille at debian.org>
 License: GPL-2+
  This package is free software; you can redistribute it and/or modify
  it under the terms of the GNU General Public License as published by
@@ -32,5 +192,3 @@ License: GPL-2+
  On Debian systems, the complete text of the GNU General
  Public License version 2 can be found in "/usr/share/common-licenses/GPL-2".
 
-# Please also look if there are files or directories which have a
-# different copyright/license attached and list them here.

-- 
generic functions for Bioconductor

