[med-svn] r11334 - in trunk/packages: . mpsqed mpsqed/trunk mpsqed/trunk/debian

[Andreas Tille]

Author: tille
Date: 2012-06-14 12:57:49 +0000 (Thu, 14 Jun 2012)
New Revision: 11334

Added:
   trunk/packages/mpsqed/
   trunk/packages/mpsqed/trunk/
   trunk/packages/mpsqed/trunk/debian/
   trunk/packages/mpsqed/trunk/debian/changelog
   trunk/packages/mpsqed/trunk/debian/compat
   trunk/packages/mpsqed/trunk/debian/control
   trunk/packages/mpsqed/trunk/debian/copyright
   trunk/packages/mpsqed/trunk/debian/rules
   trunk/packages/mpsqed/trunk/debian/upstream
   trunk/packages/mpsqed/trunk/debian/watch
Log:
Inject packaging for mpsqed


Added: trunk/packages/mpsqed/trunk/debian/changelog
===================================================================
--- trunk/packages/mpsqed/trunk/debian/changelog	                        (rev 0)
+++ trunk/packages/mpsqed/trunk/debian/changelog	2012-06-14 12:57:49 UTC (rev 11334)
@@ -0,0 +1,5 @@
+mpsqed (0.9.3-1) unstable; urgency=low
+
+  * Initial release (Closes: #<bug>)
+
+ -- Andreas Tille <tille at debian.org>  Thu, 14 Jun 2012 14:21:03 +0200

Added: trunk/packages/mpsqed/trunk/debian/compat
===================================================================
--- trunk/packages/mpsqed/trunk/debian/compat	                        (rev 0)
+++ trunk/packages/mpsqed/trunk/debian/compat	2012-06-14 12:57:49 UTC (rev 11334)
@@ -0,0 +1 @@
+9

Added: trunk/packages/mpsqed/trunk/debian/control
===================================================================
--- trunk/packages/mpsqed/trunk/debian/control	                        (rev 0)
+++ trunk/packages/mpsqed/trunk/debian/control	2012-06-14 12:57:49 UTC (rev 11334)
@@ -0,0 +1,27 @@
+Source: mpsqed
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+DM-Upload-Allowed: yes
+Uploaders: Andreas Tille <tille at debian.org>
+Build-Depends: debhelper (>= 9)
+Standards-Version: 3.9.3
+Homepage: http://sourceforge.net/projects/mpsqed/
+Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/mpsqed/trunk/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/mpsqed/trunk/
+
+Package: mpsqed
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: alignment editor and multiplex pyrosequencing assay designer
+ Molecular-based diagnostic assays are the gold standard for infectious
+ diseases today, since they allow a rapid and sensitive identification
+ and typing of various pathogens. While PCR can be designed to be
+ specific for a certain pathogen, a subsequent sequence analysis is
+ frequently required for confirmation or typing. The design of
+ appropriate PCR-based assays is a complex task, especially when
+ conserved discriminating polymorphisms are rare or if the number of
+ types which need to be differentiated is high. One extremely useful but
+ underused method for this purpose is the multiplex pyrosequencing
+ technique. mPSQed is a program developed at the Robert Koch Institute
+ and targeted at facilitating the creation of such assays.

Added: trunk/packages/mpsqed/trunk/debian/copyright
===================================================================
--- trunk/packages/mpsqed/trunk/debian/copyright	                        (rev 0)
+++ trunk/packages/mpsqed/trunk/debian/copyright	2012-06-14 12:57:49 UTC (rev 11334)
@@ -0,0 +1,13 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: mPSQed
+Upstream-Contact: DabrowskiW at rki.de
+Source: http://sourceforge.net/projects/mpsqed/files/
+
+Files: *
+Copyright: © 2011-2012 Piotr Wojtek Dabrowski <DabrowskiW at rki.de>
+                       Andreas Nitsche <NitscheA at rki.de>
+License: to_be_clarified
+
+Files: debian/*
+Copyright: © 2012 Andreas Tille <tille at debian.org>
+License: LGPL-2+

Added: trunk/packages/mpsqed/trunk/debian/rules
===================================================================
--- trunk/packages/mpsqed/trunk/debian/rules	                        (rev 0)
+++ trunk/packages/mpsqed/trunk/debian/rules	2012-06-14 12:57:49 UTC (rev 11334)
@@ -0,0 +1,6 @@
+#!/usr/bin/make -f
+
+# DH_VERBOSE := 1
+
+%:
+	dh $@


Property changes on: trunk/packages/mpsqed/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
   + *

Added: trunk/packages/mpsqed/trunk/debian/upstream
===================================================================
--- trunk/packages/mpsqed/trunk/debian/upstream	                        (rev 0)
+++ trunk/packages/mpsqed/trunk/debian/upstream	2012-06-14 12:57:49 UTC (rev 11334)
@@ -0,0 +1,13 @@
+Reference:
+  Author: Piotr Wojtek Dabrowski and Andreas Nitsche
+  Title: "mPSQed: A Software for the Design of Multiplex Pyrosequencing Assays"
+  Journal: PLoS One
+  Year: 2012
+  Volume: 7
+  Number: 6
+  Pages: e38140
+  DOI: 10.1371/journal.pone.0038140
+  PMID: 22675516
+  URL: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0038140
+  eprint: http://www.plosone.org/article/fetchObjectAttachment.action?uri=info%3Adoi%2F10.1371%2Fjournal.pone.0038140&representation=PDF
+

Added: trunk/packages/mpsqed/trunk/debian/watch
===================================================================
--- trunk/packages/mpsqed/trunk/debian/watch	                        (rev 0)
+++ trunk/packages/mpsqed/trunk/debian/watch	2012-06-14 12:57:49 UTC (rev 11334)
@@ -0,0 +1,2 @@
+version=3
+http://sf.net/mpsqed/mPSQed\.(\d[\d\.]+)\.(?:tgz|tbz|txz|(?:tar\.(?:gz|bz2|xz)))