[med-svn] [SCM] emboss branch, master, updated. debian/6.3.1-6-30-g653784d
Andreas Tille
tille at debian.org
Tue Jun 19 12:02:55 UTC 2012
The following commit has been merged in the master branch:
commit 653784d3c546010fb63989db10039e19d4e9dda1
Author: Andreas Tille <tille at debian.org>
Date: Tue Jun 19 13:37:36 2012 +0200
Fix some menu issues and create lintian overrides were needed
diff --git a/debian/changelog b/debian/changelog
index 0d96beb..815610a 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -14,8 +14,13 @@ emboss (6.4.0-1) UNRELEASED; urgency=low
- remove article from description
- Standards-Version: 3.9.3 (no changes needed)
* debian/source/format: 3.0 (quilt)
- * debian/{control,rules}: No point to explicitely mention quilt when
+ * debian/{control,rules}: No point to explicitly mention quilt when
using debian/source format 3.0 (quilt)
+ * debian/emboss.menu:
+ - menu section is calles Applications not Apps
+ - use submenu Science/Biology as root for the EMBOSS section
+ * debian/emboss.lintian-overrides: It makes really sense to create a
+ new section so silence lintian
-- Charles Plessy <plessy at debian.org> Wed, 20 Jul 2011 13:22:15 +0900
diff --git a/debian/emboss.lintian-overrides b/debian/emboss.lintian-overrides
new file mode 100644
index 0000000..ea1b923
--- /dev/null
+++ b/debian/emboss.lintian-overrides
@@ -0,0 +1,160 @@
+# It makes perfectly sense to have a separate menu section for EMBOSS tools
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:4
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:8
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:12
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:16
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:20
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:24
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:28
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:32
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:36
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:40
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:44
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:48
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:52
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:56
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:60
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:64
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:68
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:72
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:76
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:80
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:84
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:88
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:92
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:96
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:100
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:104
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:108
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:112
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:116
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:120
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:124
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:128
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:132
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:136
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:140
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:144
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:148
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:152
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:156
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:160
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:164
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:168
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:172
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:176
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:180
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:184
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:188
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:192
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:196
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:200
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:204
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:208
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:212
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:216
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:220
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:224
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:228
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:232
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:236
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:240
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:244
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:248
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:252
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:256
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:260
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:264
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:268
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:272
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:276
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:280
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:284
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:288
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:292
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:296
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:300
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:304
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:308
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:312
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:316
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:320
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:324
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:328
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:332
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:336
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:340
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:344
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:348
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:352
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:356
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:360
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:364
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:368
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:372
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:376
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:380
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:384
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:388
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:392
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:396
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:400
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:404
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:408
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:412
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:416
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:420
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:424
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:428
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:432
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:436
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:440
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:444
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:448
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:452
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:456
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:460
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:464
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:468
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:472
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:476
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:480
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:484
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:488
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:492
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:496
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:500
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:504
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:508
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:512
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:516
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:520
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:524
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:528
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:532
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:536
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:540
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:544
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:548
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:552
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:556
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:560
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:564
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:568
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:572
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:576
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:580
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:584
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:588
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:592
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:596
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:600
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:604
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:608
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:612
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:616
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:620
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:624
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:628
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:632
+emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:636
diff --git a/debian/emboss.menu b/debian/emboss.menu
index 0c7163f..b954a23 100644
--- a/debian/emboss.menu
+++ b/debian/emboss.menu
@@ -1,636 +1,636 @@
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="aaindexextract" \
description="Extract data from AAINDEX" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/aaindexextract;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="abiview" \
description="Reads ABI file and display the trace" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/abiview;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="antigenic" \
description="Finds antigenic sites in proteins" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/antigenic;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="backtranambig" \
description="Back translate a protein sequence to ambiguous codons" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/backtranambig;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="backtranseq" \
description="Back translate a protein sequence" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/backtranseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="banana" \
description="Bending and curvature plot in B-DNA" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/banana;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="biosed" \
description="Replace or delete sequence sections" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/biosed;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="btwisted" \
description="Calculates the twisting in a B-DNA sequence" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/btwisted;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="cai" \
description="CAI codon adaptation index" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/cai;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="chaos" \
description="Create a chaos game representation plot for a sequence" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/chaos;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="charge" \
description="Protein charge plot" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/charge;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="checktrans" \
description="Reports STOP codons and ORF statistics of a protein" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/checktrans;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="chips" \
description="Codon usage statistics" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/chips;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="cirdna" \
description="Draws circular maps of DNA constructs" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/cirdna;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="codcmp" \
description="Codon usage table comparison" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/codcmp;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="codcopy" \
description="Reads and writes a codon usage table" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/codcopy;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="coderet" \
description="Extract CDS, mRNA and translations from feature tables" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/coderet;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="compseq" \
description="Count composition of dimer/trimer/etc words in a sequence" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/compseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="cons" \
description="Creates a consensus from multiple alignments" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/cons;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="cpgplot" \
description="Plot CpG rich areas" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/cpgplot;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="cpgreport" \
description="Reports all CpG rich regions" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/cpgreport;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="cusp" \
description="Create a codon usage table" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/cusp;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="cutgextract" \
description="Extract data from CUTG" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/cutgextract;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="cutseq" \
description="Removes a specified section from a sequence" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/cutseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="dan" \
description="Calculates DNA RNA/DNA melting temperature" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/dan;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="dbiblast" \
description="Index a BLAST database" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/dbiblast;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="dbifasta" \
description="Database indexing for fasta file databases" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/dbifasta;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="dbiflat" \
description="Index a flat file database" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/dbiflat;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="dbigcg" \
description="Index a GCG formatted database" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/dbigcg;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="dbxfasta" \
description="Database b+tree indexing for fasta file databases" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/dbxfasta;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="dbxflat" \
description="Database b+tree indexing for flat file databases" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/dbxflat;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="dbxgcg" \
description="Database b+tree indexing for GCG formatted databases" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/dbxgcg;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="degapseq" \
description="Removes gap characters from sequences" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/degapseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="descseq" \
description="Alter the name or description of a sequence" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/descseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="diffseq" \
description="Find differences between nearly identical sequences" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/diffseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="digest" \
description="Protein proteolytic enzyme or reagent cleavage digest" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/digest;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="distmat" \
description="Creates a distance matrix from multiple alignments" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/distmat;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="dotmatcher" \
description="Displays a thresholded dotplot of two sequences" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/dotmatcher;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="dotpath" \
description="Non-overlapping wordmatch dotplot of two sequences" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/dotpath;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="dottup" \
description="Displays a wordmatch dotplot of two sequences" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/dottup;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="dreg" \
description="Regular expression search of a nucleotide sequence" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/dreg;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="einverted" \
description="Finds DNA inverted repeats" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/einverted;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="emma" \
description="Multiple alignment program - interface to ClustalW program" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/emma;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="emowse" \
description="Protein identification by mass spectrometry" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/emowse;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="entret" \
description="Reads and writes (returns) flatfile entries" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/entret;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="epestfind" \
description="Finds PEST motifs as potential proteolytic cleavage sites" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/epestfind;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="eprimer3" \
description="Picks PCR primers and hybridization oligos" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/eprimer3;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="equicktandem" \
description="Finds tandem repeats" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/equicktandem;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="est2genome" \
description="Align EST and genomic DNA sequences" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/est2genome;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="etandem" \
description="Looks for tandem repeats in a nucleotide sequence" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/etandem;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="extractfeat" \
description="Extract features from a sequence" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/extractfeat;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="extractseq" \
description="Extract regions from a sequence" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/extractseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="findkm" \
description="Find Km and Vmax for an enzyme reaction" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/findkm;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="freak" \
description="Residue/base frequency table or plot" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/freak;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="fuzznuc" \
description="Nucleic acid pattern search" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/fuzznuc;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="fuzzpro" \
description="Protein pattern search" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/fuzzpro;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="fuzztran" \
description="Protein pattern search after translation" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/fuzztran;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="garnier" \
description="Predicts protein secondary structure" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/garnier;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="geecee" \
description="Calculates fractional GC content of nucleic acid sequences" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/geecee;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="getorf" \
description="Finds and extracts open reading frames (ORFs)" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/getorf;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="helixturnhelix" \
description="Report nucleic acid binding motifs" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/helixturnhelix;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="hmoment" \
description="Hydrophobic moment calculation" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/hmoment;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="iep" \
description="Calculates the isoelectric point of a protein" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/iep;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="infoalign" \
description="Information on a multiple sequence alignment" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/infoalign;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="infoseq" \
description="Displays some simple information about sequences" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/infoseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="isochore" \
description="Plots isochores in large DNA sequences" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/isochore;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="lindna" \
description="Draws linear maps of DNA constructs" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/lindna;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="listor" \
description="Write a list file of the logical OR of two sets of sequences" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/listor;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="makenucseq" \
description="Creates random nucleotide sequences" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/makenucseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="makeprotseq" \
description="Creates random protein sequences" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/makeprotseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="marscan" \
description="Finds MAR/SAR sites in nucleic sequences" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/marscan;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="maskfeat" \
description="Mask off features of a sequence" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/maskfeat;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="maskseq" \
description="Mask off regions of a sequence" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/maskseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="matcher" \
description="Finds the best local alignments between two sequences" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/matcher;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="megamerger" \
description="Merge two large overlapping nucleic acid sequences" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/megamerger;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="merger" \
description="Merge two overlapping sequences" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/merger;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="msbar" \
description="Mutate sequence beyond all recognition" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/msbar;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="mwcontam" \
description="Shows molwts that match across a set of files" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/mwcontam;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="mwfilter" \
description="Filter noisy molwts from mass spec output" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/mwfilter;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="needle" \
description="Needleman-Wunsch global alignment" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/needle;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="newcpgreport" \
description="Report CpG rich areas" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/newcpgreport;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="newcpgseek" \
description="Reports CpG rich regions" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/newcpgseek;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="newseq" \
description="Type in a short new sequence" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/newseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="noreturn" \
description="Removes carriage return from ASCII files" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/noreturn;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="notseq" \
description="Exclude a set of sequences and write out the remaining ones" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/notseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="nthseq" \
description="Writes one sequence from a multiple set of sequences" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/nthseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="octanol" \
description="Displays protein hydropathy" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/octanol;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="oddcomp" \
description="Find protein sequence regions with a biased composition" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/oddcomp;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="palindrome" \
description="Looks for inverted repeats in a nucleotide sequence" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/palindrome;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="pasteseq" \
description="Insert one sequence into another" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/pasteseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="patmatdb" \
description="Search a protein sequence with a motif" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/patmatdb;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="patmatmotifs" \
description="Search a PROSITE motif database with a protein sequence" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/patmatmotifs;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="pepcoil" \
description="Predicts coiled coil regions" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/pepcoil;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="pepinfo" \
description="Plots simple amino acid properties in parallel" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/pepinfo;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="pepnet" \
description="Displays proteins as a helical net" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/pepnet;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="pepstats" \
description="Protein statistics" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/pepstats;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="pepwheel" \
description="Shows protein sequences as helices" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/pepwheel;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="pepwindow" \
description="Displays protein hydropathy" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/pepwindow;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="pepwindowall" \
description="Displays protein hydropathy of a set of sequences" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/pepwindowall;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="plotcon" \
description="Plot quality of conservation of a sequence alignment" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/plotcon;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="plotorf" \
description="Plot potential open reading frames" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/plotorf;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="polydot" \
description="Displays all-against-all dotplots of a set of sequences" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/polydot;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="preg" \
description="Regular expression search of a protein sequence" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/preg;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="prettyplot" \
description="Displays aligned sequences, with colouring and boxing" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/prettyplot;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="prettyseq" \
description="Output sequence with translated ranges" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/prettyseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="primersearch" \
description="Searches DNA sequences for matches with primer pairs" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/primersearch;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="printsextract" \
description="Extract data from PRINTS" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/printsextract;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="profit" \
description="Scan a sequence or database with a matrix or profile" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/profit;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="prophecy" \
description="Creates matrices/profiles from multiple alignments" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/prophecy;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="prophet" \
description="Gapped alignment for profiles" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/prophet;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="prosextract" \
description="Build the PROSITE motif database for use by patmatmotifs" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/prosextract;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="pscan" \
description="Scans proteins using PRINTS" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/pscan;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="psiphi" \
description="Phi and psi torsion angles from protein coordinates" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/psiphi;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="rebaseextract" \
description="Extract data from REBASE" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/rebaseextract;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="recoder" \
description="Remove restriction sites but maintain same translation" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/recoder;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="redata" \
description="Search REBASE for enzyme name, references, suppliers etc." \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/redata;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="remap" \
description="Display sequence with restriction sites, translation etc." \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/remap;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="restover" \
description="Find restriction enzymes producing specific overhang" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/restover;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="restrict" \
description="Finds restriction enzyme cleavage sites" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/restrict;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="revseq" \
description="Reverse and complement a sequence" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/revseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="seealso" \
description="Finds programs sharing group names" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/seealso;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="seqmatchall" \
description="All-against-all comparison of a set of sequences" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/seqmatchall;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="seqret" \
description="Reads and writes (returns) sequences" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/seqret;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="seqretsplit" \
description="Reads and writes (returns) sequences in individual files" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/seqretsplit;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="showalign" \
description="Displays a multiple sequence alignment" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/showalign;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="showfeat" \
description="Show features of a sequence" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/showfeat;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="showorf" \
description="Pretty output of DNA translations" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/showorf;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="showseq" \
description="Display a sequence with features, translation etc." \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/showseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="shuffleseq" \
description="Shuffles a set of sequences maintaining composition" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/shuffleseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="sigcleave" \
description="Reports protein signal cleavage sites" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/sigcleave;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="silent" \
description="Silent mutation restriction enzyme scan" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/silent;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="sirna" \
description="Finds siRNA duplexes in mRNA" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/sirna;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="sixpack" \
description="Display a DNA sequence with 6-frame translation and ORFs" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/sixpack;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="skipseq" \
description="Reads and writes (returns) sequences, skipping first few" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/skipseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="splitter" \
description="Split a sequence into (overlapping) smaller sequences" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/splitter;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="stretcher" \
description="Finds the best global alignment between two sequences" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/stretcher;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="stssearch" \
description="Search a DNA database for matches with a set of STS primers" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/stssearch;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="supermatcher" \
description="Match large sequences against one or more other sequences" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/supermatcher;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="syco" \
description="Synonymous codon usage Gribskov statistic plot" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/syco;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="tcode" \
description="Fickett TESTCODE statistic to identify protein-coding DNA" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/tcode;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="textsearch" \
description="Search sequence documentation. Slow, use SRS and Entrez!" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/textsearch;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="tfextract" \
description="Extract data from TRANSFAC" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/tfextract;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="tfm" \
description="Displays a program's help documentation manual" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/tfm;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="tfscan" \
description="Scans DNA sequences for transcription factors" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/tfscan;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="tmap" \
description="Displays membrane spanning regions" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/tmap;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="tranalign" \
description="Align nucleic coding regions given the aligned proteins" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/tranalign;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="transeq" \
description="Translate nucleic acid sequences" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/transeq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="trimest" \
description="Trim poly-A tails off EST sequences" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/trimest;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="trimseq" \
description="Trim ambiguous bits off the ends of sequences" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/trimseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="twofeat" \
description="Finds neighbouring pairs of features in sequences" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/twofeat;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="union" \
description="Reads sequence fragments and builds one sequence" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/union;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="vectorstrip" \
description="Strips out DNA between a pair of vector sequences" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/vectorstrip;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="water" \
description="Smith-Waterman local alignment" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/water;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="whichdb" \
description="Search all databases for an entry" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/whichdb;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="wobble" \
description="Wobble base plot" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/wobble;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="wordcount" \
description="Counts words of a specified size in a DNA sequence" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/wordcount;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="wordmatch" \
description="Finds all exact matches of a given size between 2 sequences" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/wordmatch;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="wossname" \
description="Finds programs by keywords in their one-line documentation" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/wossname;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Apps/Science/EMBOSS" \
+?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
title="yank" \
description="Reads a sequence range, appends the full USA to a list file" \
command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/yank;echo press any key to continue; read\""
--
The European Molecular Biology Open Software Suite.
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