[med-svn] [SCM] emboss branch, master, updated. debian/6.3.1-6-35-gedc24f6
Andreas Tille
tille at debian.org
Wed Jun 20 07:28:22 UTC 2012
The following commit has been merged in the master branch:
commit edc24f65b62925e299ad7ddb155cdc9f6f735f29
Author: Andreas Tille <tille at debian.org>
Date: Wed Jun 20 08:46:57 2012 +0200
Drop menu of command line tools
diff --git a/debian/changelog b/debian/changelog
index 48b59fa..21a1b1b 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -17,11 +17,8 @@ emboss (6.4.0-1) UNRELEASED; urgency=low
* debian/control:
- remove article from description
- Standards-Version: 3.9.3 (no changes needed)
- * debian/emboss.menu:
- - menu section is calles Applications not Apps
- - use submenu Science/Biology as root for the EMBOSS section
- * debian/emboss.lintian-overrides: It makes really sense to create a
- new section so silence lintian
+ * debian/emboss.menu: delete - chances that users will pick command
+ line programs from longish menu entries are pretty low
-- Charles Plessy <plessy at debian.org> Wed, 20 Jul 2011 13:22:15 +0900
diff --git a/debian/emboss.lintian-overrides b/debian/emboss.lintian-overrides
deleted file mode 100644
index ea1b923..0000000
--- a/debian/emboss.lintian-overrides
+++ /dev/null
@@ -1,160 +0,0 @@
-# It makes perfectly sense to have a separate menu section for EMBOSS tools
-emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:4
-emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:8
-emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:12
-emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:16
-emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:20
-emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:24
-emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:28
-emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:32
-emboss: menu-item-creates-new-section Applications/Science/Biology/EMBOSS usr/share/menu/emboss:36
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diff --git a/debian/emboss.menu b/debian/emboss.menu
deleted file mode 100644
index b954a23..0000000
--- a/debian/emboss.menu
+++ /dev/null
@@ -1,636 +0,0 @@
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="aaindexextract" \
- description="Extract data from AAINDEX" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/aaindexextract;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="abiview" \
- description="Reads ABI file and display the trace" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/abiview;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="antigenic" \
- description="Finds antigenic sites in proteins" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/antigenic;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="backtranambig" \
- description="Back translate a protein sequence to ambiguous codons" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/backtranambig;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="backtranseq" \
- description="Back translate a protein sequence" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/backtranseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="banana" \
- description="Bending and curvature plot in B-DNA" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/banana;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="biosed" \
- description="Replace or delete sequence sections" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/biosed;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="btwisted" \
- description="Calculates the twisting in a B-DNA sequence" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/btwisted;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="cai" \
- description="CAI codon adaptation index" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/cai;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="chaos" \
- description="Create a chaos game representation plot for a sequence" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/chaos;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="charge" \
- description="Protein charge plot" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/charge;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="checktrans" \
- description="Reports STOP codons and ORF statistics of a protein" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/checktrans;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="chips" \
- description="Codon usage statistics" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/chips;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="cirdna" \
- description="Draws circular maps of DNA constructs" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/cirdna;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="codcmp" \
- description="Codon usage table comparison" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/codcmp;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="codcopy" \
- description="Reads and writes a codon usage table" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/codcopy;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="coderet" \
- description="Extract CDS, mRNA and translations from feature tables" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/coderet;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="compseq" \
- description="Count composition of dimer/trimer/etc words in a sequence" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/compseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="cons" \
- description="Creates a consensus from multiple alignments" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/cons;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="cpgplot" \
- description="Plot CpG rich areas" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/cpgplot;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="cpgreport" \
- description="Reports all CpG rich regions" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/cpgreport;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="cusp" \
- description="Create a codon usage table" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/cusp;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="cutgextract" \
- description="Extract data from CUTG" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/cutgextract;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="cutseq" \
- description="Removes a specified section from a sequence" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/cutseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="dan" \
- description="Calculates DNA RNA/DNA melting temperature" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/dan;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="dbiblast" \
- description="Index a BLAST database" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/dbiblast;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="dbifasta" \
- description="Database indexing for fasta file databases" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/dbifasta;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="dbiflat" \
- description="Index a flat file database" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/dbiflat;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="dbigcg" \
- description="Index a GCG formatted database" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/dbigcg;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="dbxfasta" \
- description="Database b+tree indexing for fasta file databases" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/dbxfasta;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="dbxflat" \
- description="Database b+tree indexing for flat file databases" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/dbxflat;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="dbxgcg" \
- description="Database b+tree indexing for GCG formatted databases" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/dbxgcg;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="degapseq" \
- description="Removes gap characters from sequences" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/degapseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="descseq" \
- description="Alter the name or description of a sequence" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/descseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="diffseq" \
- description="Find differences between nearly identical sequences" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/diffseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="digest" \
- description="Protein proteolytic enzyme or reagent cleavage digest" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/digest;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="distmat" \
- description="Creates a distance matrix from multiple alignments" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/distmat;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="dotmatcher" \
- description="Displays a thresholded dotplot of two sequences" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/dotmatcher;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="dotpath" \
- description="Non-overlapping wordmatch dotplot of two sequences" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/dotpath;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="dottup" \
- description="Displays a wordmatch dotplot of two sequences" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/dottup;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="dreg" \
- description="Regular expression search of a nucleotide sequence" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/dreg;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="einverted" \
- description="Finds DNA inverted repeats" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/einverted;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="emma" \
- description="Multiple alignment program - interface to ClustalW program" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/emma;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="emowse" \
- description="Protein identification by mass spectrometry" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/emowse;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="entret" \
- description="Reads and writes (returns) flatfile entries" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/entret;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="epestfind" \
- description="Finds PEST motifs as potential proteolytic cleavage sites" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/epestfind;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="eprimer3" \
- description="Picks PCR primers and hybridization oligos" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/eprimer3;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="equicktandem" \
- description="Finds tandem repeats" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/equicktandem;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="est2genome" \
- description="Align EST and genomic DNA sequences" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/est2genome;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="etandem" \
- description="Looks for tandem repeats in a nucleotide sequence" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/etandem;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="extractfeat" \
- description="Extract features from a sequence" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/extractfeat;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="extractseq" \
- description="Extract regions from a sequence" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/extractseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="findkm" \
- description="Find Km and Vmax for an enzyme reaction" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/findkm;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="freak" \
- description="Residue/base frequency table or plot" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/freak;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="fuzznuc" \
- description="Nucleic acid pattern search" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/fuzznuc;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="fuzzpro" \
- description="Protein pattern search" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/fuzzpro;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="fuzztran" \
- description="Protein pattern search after translation" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/fuzztran;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="garnier" \
- description="Predicts protein secondary structure" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/garnier;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="geecee" \
- description="Calculates fractional GC content of nucleic acid sequences" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/geecee;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="getorf" \
- description="Finds and extracts open reading frames (ORFs)" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/getorf;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="helixturnhelix" \
- description="Report nucleic acid binding motifs" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/helixturnhelix;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="hmoment" \
- description="Hydrophobic moment calculation" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/hmoment;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="iep" \
- description="Calculates the isoelectric point of a protein" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/iep;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="infoalign" \
- description="Information on a multiple sequence alignment" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/infoalign;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="infoseq" \
- description="Displays some simple information about sequences" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/infoseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="isochore" \
- description="Plots isochores in large DNA sequences" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/isochore;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="lindna" \
- description="Draws linear maps of DNA constructs" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/lindna;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="listor" \
- description="Write a list file of the logical OR of two sets of sequences" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/listor;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="makenucseq" \
- description="Creates random nucleotide sequences" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/makenucseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="makeprotseq" \
- description="Creates random protein sequences" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/makeprotseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="marscan" \
- description="Finds MAR/SAR sites in nucleic sequences" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/marscan;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="maskfeat" \
- description="Mask off features of a sequence" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/maskfeat;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="maskseq" \
- description="Mask off regions of a sequence" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/maskseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="matcher" \
- description="Finds the best local alignments between two sequences" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/matcher;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="megamerger" \
- description="Merge two large overlapping nucleic acid sequences" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/megamerger;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="merger" \
- description="Merge two overlapping sequences" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/merger;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="msbar" \
- description="Mutate sequence beyond all recognition" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/msbar;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="mwcontam" \
- description="Shows molwts that match across a set of files" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/mwcontam;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="mwfilter" \
- description="Filter noisy molwts from mass spec output" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/mwfilter;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="needle" \
- description="Needleman-Wunsch global alignment" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/needle;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="newcpgreport" \
- description="Report CpG rich areas" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/newcpgreport;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="newcpgseek" \
- description="Reports CpG rich regions" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/newcpgseek;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="newseq" \
- description="Type in a short new sequence" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/newseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="noreturn" \
- description="Removes carriage return from ASCII files" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/noreturn;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="notseq" \
- description="Exclude a set of sequences and write out the remaining ones" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/notseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="nthseq" \
- description="Writes one sequence from a multiple set of sequences" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/nthseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="octanol" \
- description="Displays protein hydropathy" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/octanol;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="oddcomp" \
- description="Find protein sequence regions with a biased composition" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/oddcomp;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="palindrome" \
- description="Looks for inverted repeats in a nucleotide sequence" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/palindrome;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="pasteseq" \
- description="Insert one sequence into another" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/pasteseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="patmatdb" \
- description="Search a protein sequence with a motif" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/patmatdb;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="patmatmotifs" \
- description="Search a PROSITE motif database with a protein sequence" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/patmatmotifs;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="pepcoil" \
- description="Predicts coiled coil regions" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/pepcoil;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="pepinfo" \
- description="Plots simple amino acid properties in parallel" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/pepinfo;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="pepnet" \
- description="Displays proteins as a helical net" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/pepnet;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="pepstats" \
- description="Protein statistics" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/pepstats;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="pepwheel" \
- description="Shows protein sequences as helices" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/pepwheel;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="pepwindow" \
- description="Displays protein hydropathy" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/pepwindow;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="pepwindowall" \
- description="Displays protein hydropathy of a set of sequences" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/pepwindowall;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="plotcon" \
- description="Plot quality of conservation of a sequence alignment" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/plotcon;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="plotorf" \
- description="Plot potential open reading frames" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/plotorf;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="polydot" \
- description="Displays all-against-all dotplots of a set of sequences" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/polydot;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="preg" \
- description="Regular expression search of a protein sequence" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/preg;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="prettyplot" \
- description="Displays aligned sequences, with colouring and boxing" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/prettyplot;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="prettyseq" \
- description="Output sequence with translated ranges" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/prettyseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="primersearch" \
- description="Searches DNA sequences for matches with primer pairs" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/primersearch;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="printsextract" \
- description="Extract data from PRINTS" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/printsextract;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="profit" \
- description="Scan a sequence or database with a matrix or profile" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/profit;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="prophecy" \
- description="Creates matrices/profiles from multiple alignments" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/prophecy;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="prophet" \
- description="Gapped alignment for profiles" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/prophet;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="prosextract" \
- description="Build the PROSITE motif database for use by patmatmotifs" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/prosextract;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="pscan" \
- description="Scans proteins using PRINTS" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/pscan;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="psiphi" \
- description="Phi and psi torsion angles from protein coordinates" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/psiphi;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="rebaseextract" \
- description="Extract data from REBASE" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/rebaseextract;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="recoder" \
- description="Remove restriction sites but maintain same translation" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/recoder;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="redata" \
- description="Search REBASE for enzyme name, references, suppliers etc." \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/redata;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="remap" \
- description="Display sequence with restriction sites, translation etc." \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/remap;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="restover" \
- description="Find restriction enzymes producing specific overhang" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/restover;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="restrict" \
- description="Finds restriction enzyme cleavage sites" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/restrict;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="revseq" \
- description="Reverse and complement a sequence" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/revseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="seealso" \
- description="Finds programs sharing group names" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/seealso;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="seqmatchall" \
- description="All-against-all comparison of a set of sequences" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/seqmatchall;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="seqret" \
- description="Reads and writes (returns) sequences" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/seqret;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="seqretsplit" \
- description="Reads and writes (returns) sequences in individual files" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/seqretsplit;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="showalign" \
- description="Displays a multiple sequence alignment" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/showalign;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="showfeat" \
- description="Show features of a sequence" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/showfeat;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="showorf" \
- description="Pretty output of DNA translations" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/showorf;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="showseq" \
- description="Display a sequence with features, translation etc." \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/showseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="shuffleseq" \
- description="Shuffles a set of sequences maintaining composition" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/shuffleseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="sigcleave" \
- description="Reports protein signal cleavage sites" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/sigcleave;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="silent" \
- description="Silent mutation restriction enzyme scan" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/silent;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="sirna" \
- description="Finds siRNA duplexes in mRNA" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/sirna;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="sixpack" \
- description="Display a DNA sequence with 6-frame translation and ORFs" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/sixpack;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="skipseq" \
- description="Reads and writes (returns) sequences, skipping first few" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/skipseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="splitter" \
- description="Split a sequence into (overlapping) smaller sequences" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/splitter;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="stretcher" \
- description="Finds the best global alignment between two sequences" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/stretcher;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="stssearch" \
- description="Search a DNA database for matches with a set of STS primers" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/stssearch;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="supermatcher" \
- description="Match large sequences against one or more other sequences" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/supermatcher;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="syco" \
- description="Synonymous codon usage Gribskov statistic plot" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/syco;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="tcode" \
- description="Fickett TESTCODE statistic to identify protein-coding DNA" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/tcode;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="textsearch" \
- description="Search sequence documentation. Slow, use SRS and Entrez!" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/textsearch;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="tfextract" \
- description="Extract data from TRANSFAC" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/tfextract;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="tfm" \
- description="Displays a program's help documentation manual" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/tfm;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="tfscan" \
- description="Scans DNA sequences for transcription factors" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/tfscan;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="tmap" \
- description="Displays membrane spanning regions" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/tmap;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="tranalign" \
- description="Align nucleic coding regions given the aligned proteins" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/tranalign;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="transeq" \
- description="Translate nucleic acid sequences" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/transeq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="trimest" \
- description="Trim poly-A tails off EST sequences" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/trimest;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="trimseq" \
- description="Trim ambiguous bits off the ends of sequences" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/trimseq;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="twofeat" \
- description="Finds neighbouring pairs of features in sequences" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/twofeat;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="union" \
- description="Reads sequence fragments and builds one sequence" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/union;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="vectorstrip" \
- description="Strips out DNA between a pair of vector sequences" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/vectorstrip;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="water" \
- description="Smith-Waterman local alignment" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/water;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="whichdb" \
- description="Search all databases for an entry" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/whichdb;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="wobble" \
- description="Wobble base plot" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/wobble;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="wordcount" \
- description="Counts words of a specified size in a DNA sequence" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/wordcount;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="wordmatch" \
- description="Finds all exact matches of a given size between 2 sequences" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/wordmatch;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="wossname" \
- description="Finds programs by keywords in their one-line documentation" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/wossname;echo press any key to continue; read\""
-?package(emboss):needs="X11" section="Applications/Science/Biology/EMBOSS" \
- title="yank" \
- description="Reads a sequence range, appends the full USA to a list file" \
- command="/usr/bin/x-terminal-emulator -e /bin/sh -c \"/usr/bin/yank;echo press any key to continue; read\""
--
The European Molecular Biology Open Software Suite.
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