[med-svn] [SCM] emboss branch, meta, updated. e7b4b6e6982ea5a16613659840b051e11847be69
Charles Plessy
plessy at debian.org
Thu Jun 21 06:39:02 UTC 2012
The following commit has been merged in the meta branch:
commit e7b4b6e6982ea5a16613659840b051e11847be69
Author: Charles Plessy <plessy at debian.org>
Date: Thu Jun 21 15:36:07 2012 +0900
Build and uploaded 6.4.0-2.
diff --git a/amd64.log b/amd64.log
index d524155..78d3fa2 100644
--- a/amd64.log
+++ b/amd64.log
@@ -1,31 +1,64 @@
sbuild (Debian sbuild) 0.62.6 (07 Dec 2011) on anx191
╔══════════════════════════════════════════════════════════════════════════════╗
-║ emboss 6.4.0-1 (amd64) 20 Jun 2012 18:56 ║
+║ emboss 6.4.0-2 (amd64) 21 Jun 2012 15:09 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: emboss
-Version: 6.4.0-1
-Source Version: 6.4.0-1
+Version: 6.4.0-2
+Source Version: 6.4.0-2
Distribution: unstable
Architecture: amd64
-I: NOTICE: Log filtering will replace 'build/emboss-aQMAer/emboss-6.4.0' with '«PKGBUILDDIR»'
-I: NOTICE: Log filtering will replace 'build/emboss-aQMAer' with '«BUILDDIR»'
-I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-905e8e26-2e8b-4cde-a30a-a498a16816f5' with '«CHROOT»'
+I: NOTICE: Log filtering will replace 'build/emboss-eYWzkj/emboss-6.4.0' with '«PKGBUILDDIR»'
+I: NOTICE: Log filtering will replace 'build/emboss-eYWzkj' with '«BUILDDIR»'
+I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-amd64-sbuild-4f539933-0e43-4d63-82b6-2fd731a4b21d' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
-Hit ftp://ftp.jaist.ac.jp sid InRelease
-Hit ftp://ftp.jaist.ac.jp sid/main amd64 Packages/DiffIndex
-Hit ftp://ftp.jaist.ac.jp sid/main Translation-en/DiffIndex
+Get:1 ftp://ftp.jaist.ac.jp sid InRelease [234 kB]
+Get:2 ftp://ftp.jaist.ac.jp sid/main amd64 Packages/DiffIndex [7876 B]
+Get:3 ftp://ftp.jaist.ac.jp sid/main Translation-en/DiffIndex [7876 B]
+Get:4 ftp://ftp.jaist.ac.jp sid/main amd64 2012-06-20-0822.16.pdiff [17.6 kB]
+Get:5 ftp://ftp.jaist.ac.jp sid/main amd64 2012-06-20-0822.16.pdiff [17.6 kB]
+Get:6 ftp://ftp.jaist.ac.jp sid/main 2012-06-20-0822.16.pdiff [313 B]
+Get:7 ftp://ftp.jaist.ac.jp sid/main 2012-06-20-0822.16.pdiff [313 B]
+Get:8 ftp://ftp.jaist.ac.jp sid/main amd64 2012-06-20-1416.47.pdiff [35.5 kB]
+Get:9 ftp://ftp.jaist.ac.jp sid/main amd64 2012-06-20-1416.47.pdiff [35.5 kB]
+Get:10 ftp://ftp.jaist.ac.jp sid/main 2012-06-20-1416.47.pdiff [2173 B]
+Get:11 ftp://ftp.jaist.ac.jp sid/main 2012-06-20-1416.47.pdiff [2173 B]
+Get:12 ftp://ftp.jaist.ac.jp sid/main amd64 2012-06-20-2014.30.pdiff [31.0 kB]
+Get:13 ftp://ftp.jaist.ac.jp sid/main amd64 2012-06-20-2014.30.pdiff [31.0 kB]
+Get:14 ftp://ftp.jaist.ac.jp sid/main 2012-06-20-2014.30.pdiff [799 B]
+Get:15 ftp://ftp.jaist.ac.jp sid/main 2012-06-20-2014.30.pdiff [799 B]
+Get:16 ftp://ftp.jaist.ac.jp sid/main amd64 2012-06-21-0214.11.pdiff [19.5 kB]
+Get:17 ftp://ftp.jaist.ac.jp sid/main amd64 2012-06-21-0214.11.pdiff [19.5 kB]
+Get:18 ftp://ftp.jaist.ac.jp sid/main 2012-06-21-0214.11.pdiff [708 B]
+Get:19 ftp://ftp.jaist.ac.jp sid/main 2012-06-21-0214.11.pdiff [708 B]
+Fetched 357 kB in 13s (27.3 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
-0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+The following packages will be upgraded:
+ gzip zlib1g
+2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
+Need to get 207 kB of archives.
+After this operation, 19.5 kB of additional disk space will be used.
+Get:1 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main gzip amd64 1.5-1.1 [119 kB]
+Get:2 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main zlib1g amd64 1:1.2.7.dfsg-12 [87.3 kB]
+debconf: delaying package configuration, since apt-utils is not installed
+Fetched 207 kB in 1s (106 kB/s)
+(Reading database ... 11766 files and directories currently installed.)
+Preparing to replace gzip 1.4-5 (using .../gzip_1.5-1.1_amd64.deb) ...
+Unpacking replacement gzip ...
+Setting up gzip (1.5-1.1) ...
+(Reading database ... 11767 files and directories currently installed.)
+Preparing to replace zlib1g:amd64 1:1.2.7.dfsg-11+b1 (using .../zlib1g_1%3a1.2.7.dfsg-12_amd64.deb) ...
+Unpacking replacement zlib1g:amd64 ...
+Setting up zlib1g:amd64 (1:1.2.7.dfsg-12) ...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
@@ -35,14 +68,14 @@ Reading state information...
Local sources
─────────────
-emboss_6.4.0-1.dsc exists in .; copying to chroot
+emboss_6.4.0-2.dsc exists in .; copying to chroot
Check arch
──────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
-dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-P4DHKR/apt_archive/sbuild-build-depends-core-dummy.deb'.
+dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-KrUry6/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
@@ -61,7 +94,7 @@ Use 'apt-get autoremove' to remove them.
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Merged Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), quilt, libx11-dev, x11proto-core-dev, libgdchart-gd2-xpm-dev, zlib1g-dev, libpng-dev, libexpat1-dev, libhpdf-dev, libmysqlclient-dev, libpq-dev, antiword, sharutils, autotools-dev, tcsh | csh | c-shell, default-jdk
Filtered Build-Depends: base-files, base-passwd, bash, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, ncurses-base, ncurses-bin, perl-base, sed, login, sysvinit-utils, sysvinit, tar, bsdutils, mount, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), quilt, libx11-dev, x11proto-core-dev, libgdchart-gd2-xpm-dev, zlib1g-dev, libpng-dev, libexpat1-dev, libhpdf-dev, libmysqlclient-dev, libpq-dev, antiword, sharutils, autotools-dev, tcsh, default-jdk
-dpkg-deb: building package `sbuild-build-depends-emboss-dummy' in `/«BUILDDIR»/resolver-GXSkmO/apt_archive/sbuild-build-depends-emboss-dummy.deb'.
+dpkg-deb: building package `sbuild-build-depends-emboss-dummy' in `/«BUILDDIR»/resolver-QMzEMJ/apt_archive/sbuild-build-depends-emboss-dummy.deb'.
OK
Reading package lists...
@@ -270,7 +303,7 @@ Get:113 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main diffstat amd64 1.55-3 [
Get:114 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main comerr-dev amd64 2.1-1.42.4-3 [42.8 kB]
Get:115 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main krb5-multidev amd64 1.10.1+dfsg-1 [153 kB]
Get:116 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libexpat1-dev amd64 2.1.0-1 [229 kB]
-Get:117 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main zlib1g-dev amd64 1:1.2.7.dfsg-11+b1 [215 kB]
+Get:117 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main zlib1g-dev amd64 1:1.2.7.dfsg-12 [215 kB]
Get:118 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libfreetype6-dev amd64 2.4.9-1 [803 kB]
Get:119 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libjpeg8-dev amd64 8d-1 [242 kB]
Get:120 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libpng12-dev amd64 1.2.49-1 [266 kB]
@@ -297,9 +330,9 @@ Get:140 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main sharutils amd64 1:4.11.
Get:141 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main tcsh amd64 6.18.01-1 [578 kB]
Get:142 ftp://ftp.jaist.ac.jp/pub/Linux/Debian/ sid/main libhpdf-dev amd64 2.2.1-1 [38.6 kB]
debconf: delaying package configuration, since apt-utils is not installed
-Fetched 91.7 MB in 2min 47s (546 kB/s)
+Fetched 91.7 MB in 2min 12s (691 kB/s)
Selecting previously unselected package libpipeline1:amd64.
-(Reading database ... 11766 files and directories currently installed.)
+(Reading database ... 11767 files and directories currently installed.)
Unpacking libpipeline1:amd64 (from .../libpipeline1_1.2.1-1_amd64.deb) ...
Selecting previously unselected package libssl1.0.0:amd64.
Unpacking libssl1.0.0:amd64 (from .../libssl1.0.0_1.0.1c-3_amd64.deb) ...
@@ -554,7 +587,7 @@ Unpacking krb5-multidev (from .../krb5-multidev_1.10.1+dfsg-1_amd64.deb) ...
Selecting previously unselected package libexpat1-dev.
Unpacking libexpat1-dev (from .../libexpat1-dev_2.1.0-1_amd64.deb) ...
Selecting previously unselected package zlib1g-dev:amd64.
-Unpacking zlib1g-dev:amd64 (from .../zlib1g-dev_1%3a1.2.7.dfsg-11+b1_amd64.deb) ...
+Unpacking zlib1g-dev:amd64 (from .../zlib1g-dev_1%3a1.2.7.dfsg-12_amd64.deb) ...
Selecting previously unselected package libfreetype6-dev.
Unpacking libfreetype6-dev (from .../libfreetype6-dev_2.4.9-1_amd64.deb) ...
Selecting previously unselected package libjpeg8-dev:amd64.
@@ -744,7 +777,7 @@ Setting up diffstat (1.55-3) ...
Setting up comerr-dev (2.1-1.42.4-3) ...
Setting up krb5-multidev (1.10.1+dfsg-1) ...
Setting up libexpat1-dev (2.1.0-1) ...
-Setting up zlib1g-dev:amd64 (1:1.2.7.dfsg-11+b1) ...
+Setting up zlib1g-dev:amd64 (1:1.2.7.dfsg-12) ...
Setting up libfreetype6-dev (2.4.9-1) ...
Setting up libjpeg8-dev:amd64 (8d-1) ...
Setting up libpng12-dev (1.2.49-1) ...
@@ -989,7 +1022,7 @@ Setting up openjdk-6-jre-lib (6b24-1.11.1-6) ...
Kernel: Linux 3.2.0-2-amd64 amd64 (x86_64)
Toolchain package versions: binutils_2.22-6.1 dpkg-dev_1.16.4.3 g++-4.6_4.6.3-7 g++-4.7_4.7.1-1 gcc-4.6_4.6.3-7 gcc-4.7_4.7.1-1 libc6-dev_2.13-33 libstdc++6_4.7.1-1 libstdc++6-4.6-dev_4.6.3-7 libstdc++6-4.7-dev_4.7.1-1 linux-libc-dev_3.2.20-1
-Package versions: antiword_0.37-8 apt_0.9.7 autotools-dev_20120608.1 base-files_6.11 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5 build-essential_11.5 bzip2_1.0.6-3 ca-certificates_20120212 ca-certificates-java_20120608 comerr-dev_2.1-1.42.4-3 coreutils_8.13-3.2 cpp_4:4.7.0-6 cpp-4.6_4.6.3-7 cpp-4.7_4.7.1-1 dash_0.5.7-3 debconf_1.5.44 debfoster_2.7-1.1 debhelper_9.20120608 debian-archive-keyring_2012.4 debianutils_4.3.1 default-jdk_1:1.6-47 default-jre_1:1.6-47 default-jre-headless_1:1.6-47 diffstat_1.55-3 diffutils_1:3.2-6 dpkg_1.16.4.3 dpkg-dev_1.16.4.3 e2fslibs_1.42.4-3 e2fsprogs_1.42.4-3 fakeroot_1.18.4-2 file_5.11-1 findutils_4.4.2-4 fontconfig_2.9.0-6 fontconfig-config_2.9.0-6 g++_4:4.7.0-6 g++-4.6_4.6.3-7 g++-4.7_4.7.1-1 gcc_4:4.7.0-6 gcc-4.6_4.6.3-7 gcc-4.6-base_4.6.3-7 gcc-4.7_4.7.1-1 gcc-4.7-base_4.7.1-1 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.12-2 groff-base_1.21-7 gzip_1.4-5 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-27 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 java-common_0.47 krb5-multidev_1.10.1+dfsg-1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.7 libasound2_1.0.25-3 libasprintf0c2_0.18.1.1-9 libasyncns0_0.8-4 libatk-wrapper-java_0.30.4-2 libatk-wrapper-java-jni_0.30.4-2 libatk1.0-0_2.4.0-2 libatk1.0-data_2.4.0-2 libattr1_1:2.4.46-8 libavahi-client3_0.6.31-1 libavahi-common-data_0.6.31-1 libavahi-common3_0.6.31-1 libblkid1_2.20.1-5 libbz2-1.0_1.0.6-3 libc-bin_2.13-33 libc-dev-bin_2.13-33 libc6_2.13-33 libc6-dev_2.13-33 libcairo2_1.12.2-2 libcap2_1:2.22-1.1 libclass-isa-perl_0.36-3 libcomerr2_1.42.4-3 libcroco3_0.6.5-1 libcups2_1.5.3-2 libdatrie1_0.2.5-3 libdb5.1_5.1.29-4 libdbus-1-3_1.6.0-1 libdpkg-perl_1.16.4.3 libexpat1_2.1.0-1 libexpat1-dev_2.1.0-1 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-2 libflac8_1.2.1-6 libfontconfig1_2.9.0-6 libfreetype6_2.4.9-1 libfreetype6-dev_2.4.9-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.1-1 libgcrypt11_1.5.0-3 libgd2-noxpm_2.0.36~rc1~dfsg-6.1 libgd2-noxpm-dev_2.0.36~rc1~dfsg-6.1 libgdbm3_1.8.3-11 libgdchart-gd2-xpm_0.11.5-7+b1 libgdchart-gd2-xpm-dev_0.11.5-7+b1 libgdk-pixbuf2.0-0_2.26.1-1 libgdk-pixbuf2.0-common_2.26.1-1 libgettextpo0_0.18.1.1-9 libgif4_4.1.6-9.1 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-2 libgnutls26_2.12.20-1 libgomp1_4.7.1-1 libgpg-error0_1.10-3 libgpm2_1.20.4-6 libgssapi-krb5-2_1.10.1+dfsg-1 libgssrpc4_1.10.1+dfsg-1 libgtk2.0-0_2.24.10-1 libgtk2.0-common_2.24.10-1 libhpdf-2.2.1_2.2.1-1 libhpdf-dev_2.2.1-1 libice6_2:1.0.8-2 libitm1_4.7.1-1 libjasper1_1.900.1-13 libjbig0_2.0-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 libjson0_0.9-1.1 libk5crypto3_1.10.1+dfsg-1 libkadm5clnt-mit8_1.10.1+dfsg-1 libkadm5srv-mit8_1.10.1+dfsg-1 libkdb5-6_1.10.1+dfsg-1 libkeyutils1_1.5.5-2 libkrb5-3_1.10.1+dfsg-1 libkrb5-dev_1.10.1+dfsg-1 libkrb5support0_1.10.1+dfsg-1 libldap-2.4-2_2.4.28-1.3 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20120614-1 libmagic1_5.11-1 libmount1_2.20.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-5 libmysqlclient-dev_5.5.24+dfsg-3 libmysqlclient18_5.5.24+dfsg-3 libncurses5_5.9-9 libnspr4_2:4.9.1-1 libnss3_2:3.13.5-1 libnss3-1d_2:3.13.5-1 libogg0_1.3.0-4 libp11-kit0_0.12-3 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpango1.0-0_1.30.0-1 libpcre3_1:8.30-5 libpcsclite1_1.8.3-3 libpipeline1_1.2.1-1 libpixman-1-0_0.26.0-2 libpng12-0_1.2.49-1 libpng12-dev_1.2.49-1 libpod-plainer-perl_1.03-1 libpq-dev_9.1.4-1 libpq5_9.1.4-1 libpthread-stubs0_0.3-3 libpthread-stubs0-dev_0.3-3 libpulse0_2.0-3 libquadmath0_4.7.1-1 libreadline6_6.2-8 libsasl2-2_2.1.25.dfsg1-4+b1 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-13 libsm6_2:1.2.1-2 libsndfile1_1.0.25-5 libsqlite3-0_3.7.13-1 libss2_1.42.4-3 libssl-dev_1.0.1c-3 libssl1.0.0_1.0.1c-3 libstdc++6_4.7.1-1 libstdc++6-4.6-dev_4.6.3-7 libstdc++6-4.7-dev_4.7.1-1 libswitch-perl_2.16-2 libtasn1-3_2.13-2 libthai-data_0.1.18-1 libthai0_0.1.18-1 libtiff4_3.9.6-5 libtimedate-perl_1.2000-1 libtinfo5_5.9-9 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5 libvorbis0a_1.3.2-1.3 libvorbisenc2_1.3.2-1.3 libwrap0_7.6.q-23 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libx11-dev_2:1.5.0-1 libx11-xcb1_2:1.5.0-1 libxau-dev_1:1.0.7-1 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-1 libxcb-shm0_1.8.1-1 libxcb1_1.8.1-1 libxcb1-dev_1.8.1-1 libxcomposite1_1:0.4.3-2 libxcursor1_1:1.1.13-1 libxdamage1_1:1.1.3-2 libxdmcp-dev_1:1.1.1-1 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.1-2 libxfixes3_1:5.0-4 libxft2_2.3.1-1 libxi6_2:1.6.1-1 libxinerama1_2:1.1.2-1 libxml2_2.8.0+dfsg1-4 libxpm-dev_1:3.5.10-1 libxpm4_1:3.5.10-1 libxrandr2_2:1.3.2-2 libxrender1_1:0.9.7-1 libxtst6_2:1.2.1-1 linux-libc-dev_3.2.20-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian7 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mount_2.20.1-5 multiarch-support_2.13-33 mysql-common_5.5.24+dfsg-3 ncurses-base_5.9-9 ncurses-bin_5.9-9 openjdk-6-jdk_6b24-1.11.1-6 openjdk-6-jre_6b24-1.11.1-6 openjdk-6-jre-headless_6b24-1.11.1-6 openjdk-6-jre-lib_6b24-1.11.1-6 openssl_1.0.1c-3 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-12 perl-base_5.14.2-12 perl-modules_5.14.2-12 po-debconf_1.0.16+nmu2 quilt_0.60-2 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-emboss-dummy_0.invalid.0 sed_4.2.1-10 sensible-utils_0.0.7 shared-mime-info_1.0-1 sharutils_1:4.11.1-1 sysv-rc_2.88dsf-27 sysvinit_2.88dsf-27 sysvinit-utils_2.88dsf-27 tar_1.26-4 tcsh_6.18.01-1 ttf-dejavu-core_2.33-2 tzdata_2012c-1 tzdata-java_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-5 x11-common_1:7.6+13 x11proto-core-dev_7.0.23-1 x11proto-input-dev_2.2-1 x11proto-kb-dev_1.0.6-2 xorg-sgml-doctools_1:1.10-1 xtrans-dev_1.2.7-1 xz-utils_5.1.1alpha+20120614-1 zlib1g_1:1.2.7.dfsg-11+b1 zlib1g-dev_1:1.2.7.dfsg-11+b1
+Package versions: antiword_0.37-8 apt_0.9.7 autotools-dev_20120608.1 base-files_6.11 base-passwd_3.5.24 bash_4.2-2 binutils_2.22-6.1 bsdmainutils_9.0.3 bsdutils_1:2.20.1-5 build-essential_11.5 bzip2_1.0.6-3 ca-certificates_20120212 ca-certificates-java_20120608 comerr-dev_2.1-1.42.4-3 coreutils_8.13-3.2 cpp_4:4.7.0-6 cpp-4.6_4.6.3-7 cpp-4.7_4.7.1-1 dash_0.5.7-3 debconf_1.5.44 debfoster_2.7-1.1 debhelper_9.20120608 debian-archive-keyring_2012.4 debianutils_4.3.1 default-jdk_1:1.6-47 default-jre_1:1.6-47 default-jre-headless_1:1.6-47 diffstat_1.55-3 diffutils_1:3.2-6 dpkg_1.16.4.3 dpkg-dev_1.16.4.3 e2fslibs_1.42.4-3 e2fsprogs_1.42.4-3 fakeroot_1.18.4-2 file_5.11-1 findutils_4.4.2-4 fontconfig_2.9.0-6 fontconfig-config_2.9.0-6 g++_4:4.7.0-6 g++-4.6_4.6.3-7 g++-4.7_4.7.1-1 gcc_4:4.7.0-6 gcc-4.6_4.6.3-7 gcc-4.6-base_4.6.3-7 gcc-4.7_4.7.1-1 gcc-4.7-base_4.7.1-1 gettext_0.18.1.1-9 gettext-base_0.18.1.1-9 gnupg_1.4.12-4 gpgv_1.4.12-4 grep_2.12-2 groff-base_1.21-7 gzip_1.5-1.1 hostname_3.11 html2text_1.3.2a-15 initscripts_2.88dsf-27 insserv_1.14.0-3 intltool-debian_0.35.0+20060710.1 java-common_0.47 krb5-multidev_1.10.1+dfsg-1 libacl1_2.2.51-8 libapt-pkg4.12_0.9.7 libasound2_1.0.25-3 libasprintf0c2_0.18.1.1-9 libasyncns0_0.8-4 libatk-wrapper-java_0.30.4-2 libatk-wrapper-java-jni_0.30.4-2 libatk1.0-0_2.4.0-2 libatk1.0-data_2.4.0-2 libattr1_1:2.4.46-8 libavahi-client3_0.6.31-1 libavahi-common-data_0.6.31-1 libavahi-common3_0.6.31-1 libblkid1_2.20.1-5 libbz2-1.0_1.0.6-3 libc-bin_2.13-33 libc-dev-bin_2.13-33 libc6_2.13-33 libc6-dev_2.13-33 libcairo2_1.12.2-2 libcap2_1:2.22-1.1 libclass-isa-perl_0.36-3 libcomerr2_1.42.4-3 libcroco3_0.6.5-1 libcups2_1.5.3-2 libdatrie1_0.2.5-3 libdb5.1_5.1.29-4 libdbus-1-3_1.6.0-1 libdpkg-perl_1.16.4.3 libexpat1_2.1.0-1 libexpat1-dev_2.1.0-1 libffi5_3.0.10-3 libfile-fcntllock-perl_0.14-2 libflac8_1.2.1-6 libfontconfig1_2.9.0-6 libfreetype6_2.4.9-1 libfreetype6-dev_2.4.9-1 libgc1c2_1:7.1-8 libgcc1_1:4.7.1-1 libgcrypt11_1.5.0-3 libgd2-noxpm_2.0.36~rc1~dfsg-6.1 libgd2-noxpm-dev_2.0.36~rc1~dfsg-6.1 libgdbm3_1.8.3-11 libgdchart-gd2-xpm_0.11.5-7+b1 libgdchart-gd2-xpm-dev_0.11.5-7+b1 libgdk-pixbuf2.0-0_2.26.1-1 libgdk-pixbuf2.0-common_2.26.1-1 libgettextpo0_0.18.1.1-9 libgif4_4.1.6-9.1 libglib2.0-0_2.32.3-1 libgmp10_2:5.0.5+dfsg-2 libgnutls26_2.12.20-1 libgomp1_4.7.1-1 libgpg-error0_1.10-3 libgpm2_1.20.4-6 libgssapi-krb5-2_1.10.1+dfsg-1 libgssrpc4_1.10.1+dfsg-1 libgtk2.0-0_2.24.10-1 libgtk2.0-common_2.24.10-1 libhpdf-2.2.1_2.2.1-1 libhpdf-dev_2.2.1-1 libice6_2:1.0.8-2 libitm1_4.7.1-1 libjasper1_1.900.1-13 libjbig0_2.0-2 libjpeg8_8d-1 libjpeg8-dev_8d-1 libjson0_0.9-1.1 libk5crypto3_1.10.1+dfsg-1 libkadm5clnt-mit8_1.10.1+dfsg-1 libkadm5srv-mit8_1.10.1+dfsg-1 libkdb5-6_1.10.1+dfsg-1 libkeyutils1_1.5.5-2 libkrb5-3_1.10.1+dfsg-1 libkrb5-dev_1.10.1+dfsg-1 libkrb5support0_1.10.1+dfsg-1 libldap-2.4-2_2.4.28-1.3 liblzma2_5.1.1alpha+20110809-2 liblzma5_5.1.1alpha+20120614-1 libmagic1_5.11-1 libmount1_2.20.1-5 libmpc2_0.9-4 libmpfr4_3.1.0-5 libmysqlclient-dev_5.5.24+dfsg-3 libmysqlclient18_5.5.24+dfsg-3 libncurses5_5.9-9 libnspr4_2:4.9.1-1 libnss3_2:3.13.5-1 libnss3-1d_2:3.13.5-1 libogg0_1.3.0-4 libp11-kit0_0.12-3 libpam-modules_1.1.3-7.1 libpam-modules-bin_1.1.3-7.1 libpam-runtime_1.1.3-7.1 libpam0g_1.1.3-7.1 libpango1.0-0_1.30.0-1 libpcre3_1:8.30-5 libpcsclite1_1.8.3-3 libpipeline1_1.2.1-1 libpixman-1-0_0.26.0-2 libpng12-0_1.2.49-1 libpng12-dev_1.2.49-1 libpod-plainer-perl_1.03-1 libpq-dev_9.1.4-1 libpq5_9.1.4-1 libpthread-stubs0_0.3-3 libpthread-stubs0-dev_0.3-3 libpulse0_2.0-3 libquadmath0_4.7.1-1 libreadline6_6.2-8 libsasl2-2_2.1.25.dfsg1-4+b1 libselinux1_2.1.9-5 libsemanage-common_2.1.6-6 libsemanage1_2.1.6-6 libsepol1_2.1.4-3 libslang2_2.2.4-13 libsm6_2:1.2.1-2 libsndfile1_1.0.25-5 libsqlite3-0_3.7.13-1 libss2_1.42.4-3 libssl-dev_1.0.1c-3 libssl1.0.0_1.0.1c-3 libstdc++6_4.7.1-1 libstdc++6-4.6-dev_4.6.3-7 libstdc++6-4.7-dev_4.7.1-1 libswitch-perl_2.16-2 libtasn1-3_2.13-2 libthai-data_0.1.18-1 libthai0_0.1.18-1 libtiff4_3.9.6-5 libtimedate-perl_1.2000-1 libtinfo5_5.9-9 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5 libvorbis0a_1.3.2-1.3 libvorbisenc2_1.3.2-1.3 libwrap0_7.6.q-23 libx11-6_2:1.5.0-1 libx11-data_2:1.5.0-1 libx11-dev_2:1.5.0-1 libx11-xcb1_2:1.5.0-1 libxau-dev_1:1.0.7-1 libxau6_1:1.0.7-1 libxcb-render0_1.8.1-1 libxcb-shm0_1.8.1-1 libxcb1_1.8.1-1 libxcb1-dev_1.8.1-1 libxcomposite1_1:0.4.3-2 libxcursor1_1:1.1.13-1 libxdamage1_1:1.1.3-2 libxdmcp-dev_1:1.1.1-1 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.1-2 libxfixes3_1:5.0-4 libxft2_2.3.1-1 libxi6_2:1.6.1-1 libxinerama1_2:1.1.2-1 libxml2_2.8.0+dfsg1-4 libxpm-dev_1:3.5.10-1 libxpm4_1:3.5.10-1 libxrandr2_2:1.3.2-2 libxrender1_1:0.9.7-1 libxtst6_2:1.2.1-1 linux-libc-dev_3.2.20-1 login_1:4.1.5.1-1 lsb-base_4.1+Debian7 make_3.81-8.2 man-db_2.6.2-1 mawk_1.3.3-17 mount_2.20.1-5 multiarch-support_2.13-33 mysql-common_5.5.24+dfsg-3 ncurses-base_5.9-9 ncurses-bin_5.9-9 openjdk-6-jdk_6b24-1.11.1-6 openjdk-6-jre_6b24-1.11.1-6 openjdk-6-jre-headless_6b24-1.11.1-6 openjdk-6-jre-lib_6b24-1.11.1-6 openssl_1.0.1c-3 passwd_1:4.1.5.1-1 patch_2.6.1-3 perl_5.14.2-12 perl-base_5.14.2-12 perl-modules_5.14.2-12 po-debconf_1.0.16+nmu2 quilt_0.60-2 readline-common_6.2-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-emboss-dummy_0.invalid.0 sed_4.2.1-10 sensible-utils_0.0.7 shared-mime-info_1.0-1 sharutils_1:4.11.1-1 sysv-rc_2.88dsf-27 sysvinit_2.88dsf-27 sysvinit-utils_2.88dsf-27 tar_1.26-4 tcsh_6.18.01-1 ttf-dejavu-core_2.33-2 tzdata_2012c-1 tzdata-java_2012c-1 ucf_3.0025+nmu3 util-linux_2.20.1-5 x11-common_1:7.6+13 x11proto-core-dev_7.0.23-1 x11proto-input-dev_2.2-1 x11proto-kb-dev_1.0.6-2 xorg-sgml-doctools_1:1.10-1 xtrans-dev_1.2.7-1 xz-utils_5.1.1alpha+20120614-1 zlib1g_1:1.2.7.dfsg-12 zlib1g-dev_1:1.2.7.dfsg-12
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
@@ -999,10 +1032,10 @@ Package versions: antiword_0.37-8 apt_0.9.7 autotools-dev_20120608.1 base-files_
Unpack source
─────────────
-dpkg-source: warning: extracting unsigned source package (emboss_6.4.0-1.dsc)
+dpkg-source: warning: extracting unsigned source package (emboss_6.4.0-2.dsc)
dpkg-source: info: extracting emboss in emboss-6.4.0
dpkg-source: info: unpacking emboss_6.4.0.orig.tar.gz
-dpkg-source: info: applying emboss_6.4.0-1.diff.gz
+dpkg-source: info: applying emboss_6.4.0-2.diff.gz
Check disc space
────────────────
@@ -1019,7 +1052,7 @@ SCHROOT_CHROOT_NAME=sid-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=charles
-SCHROOT_SESSION_ID=sid-amd64-sbuild-905e8e26-2e8b-4cde-a30a-a498a16816f5
+SCHROOT_SESSION_ID=sid-amd64-sbuild-4f539933-0e43-4d63-82b6-2fd731a4b21d
SCHROOT_UID=31051
SCHROOT_USER=charles
SHELL=/bin/sh
@@ -1031,7 +1064,7 @@ dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package emboss
-dpkg-buildpackage: source version 6.4.0-1
+dpkg-buildpackage: source version 6.4.0-2
dpkg-buildpackage: source changed by Charles Plessy <plessy at debian.org>
dpkg-source --before-build emboss-6.4.0
dpkg-buildpackage: host architecture amd64
@@ -1089,9 +1122,9 @@ make[1]: Leaving directory `/«PKGBUILDDIR»'
dpkg-source: warning: no source format specified in debian/source/format, see dpkg-source(1)
dpkg-source: info: using source format `1.0'
dpkg-source: info: building emboss using existing emboss_6.4.0.orig.tar.gz
-dpkg-source: info: building emboss in emboss_6.4.0-1.diff.gz
+dpkg-source: info: building emboss in emboss_6.4.0-2.diff.gz
dpkg-source: warning: file emboss-6.4.0/debian/emboss-lib.lintian-overrides has no final newline (either original or modified version)
-dpkg-source: info: building emboss in emboss_6.4.0-1.dsc
+dpkg-source: info: building emboss in emboss_6.4.0-2.dsc
debian/rules build
dh build --with autotools-dev,quilt
dh_testdir
@@ -3118,6 +3151,9 @@ dasregistry-uniprot-multipleseqs test failed code 2 Failed to run
Failed to run 'seqret tdas:uniparc:UPI000000000A -sbegin 1 -send 10 stdout -auto < stdin', status 1/0
dasregistry-uniparc test failed code 2 Failed to run
+Failed to run 'seqret tgenedashuman:ENSG00000139618 -send 10 stdout -auto < stdin', status 1/0
+das-genedas test failed code 2 Failed to run
+
cp: cannot stat `/sbuild-nonexistent/.embossdata/qatests.server.ensembldasserver': No such file or directory
Failed to run 'cachedas -servername tensembldasserver -auto -cachefile ~/.embossdata/qatests.server.ensembldasserver < stdin', status 1/0
cachedas-ensembl test failed code 2 Failed to run
@@ -5050,12 +5086,12 @@ chado-flybase-transcript test failed code 2 Failed to run
Failed to run 'featcopy tflybase:'FBgn0030105' FBgn0030105.gff -auto < stdin', status 1/0
chado-flybase-gene test failed code 2 Failed to run
-Failed EMBOSS: 369
-Tests total: 1549 pass: 1180 fail: 369
+Failed EMBOSS: 370
+Tests total: 1549 pass: 1179 fail: 370
Skipped: 299 check: 64 embassy: 225 requirements: 10
No tests: 0
Missing documentation html: 178 text: 178 sourceforge: 178
-Time: 133 seconds
+Time: 159 seconds
make[1]: Leaving directory `/«PKGBUILDDIR»'
fakeroot debian/rules binary
dh binary --with autotools-dev,quilt
@@ -5091,7 +5127,7 @@ dh binary --with autotools-dev,quilt
install -d debian/emboss-lib
install -d debian/jemboss
install -d debian/jemboss/usr/bin
- debian/rules override_dh_auto_install
+ debian/rules override_dh_auto_install-arch
make[1]: Entering directory `/«PKGBUILDDIR»'
### Binaries and data go to a temporary dir before being moved to their own package ###
/usr/bin/make -C emboss install DESTDIR=/«PKGBUILDDIR»/debian/emboss_tmp
@@ -7789,6 +7825,9 @@ make[2]: Leaving directory `/«PKGBUILDDIR»/doc'
antiword /«PKGBUILDDIR»/debian/emboss-doc/usr/share/EMBOSS/doc/manuals/domainatrix.doc > /«PKGBUILDDIR»/debian/emboss-doc/usr/share/EMBOSS/doc/manuals/domainatrix.txt
# Remove this file when the relicenced file becomes part of the upstream tarball.
uudecode -o /«PKGBUILDDIR»/debian/emboss-doc/usr/share/EMBOSS/doc/manuals/EMBOSS_qg.pdf /«PKGBUILDDIR»/debian/EMBOSS_qg_new.pdf.uu
+make[1]: Leaving directory `/«PKGBUILDDIR»'
+ debian/rules override_dh_auto_install-indep
+make[1]: Entering directory `/«PKGBUILDDIR»'
/usr/bin/make -C jemboss install DESTDIR=/«PKGBUILDDIR»/debian/jemboss bindir=/usr/bin
make[2]: Entering directory `/«PKGBUILDDIR»/jemboss'
Making install in images
@@ -11838,24 +11877,24 @@ dpkg-gencontrol: warning: Depends field of package jemboss: unknown substitution
make[1]: Entering directory `/«PKGBUILDDIR»'
dh_builddeb -- -Z xz
dpkg-deb -Z xz --build debian/emboss ..
-dpkg-deb: building package `emboss' in `../emboss_6.4.0-1_amd64.deb'.
+dpkg-deb: building package `emboss' in `../emboss_6.4.0-2_amd64.deb'.
dpkg-deb -Z xz --build debian/emboss-data ..
-dpkg-deb: building package `emboss-data' in `../emboss-data_6.4.0-1_all.deb'.
+dpkg-deb: building package `emboss-data' in `../emboss-data_6.4.0-2_all.deb'.
dpkg-deb -Z xz --build debian/emboss-doc ..
-dpkg-deb: building package `emboss-doc' in `../emboss-doc_6.4.0-1_all.deb'.
+dpkg-deb: building package `emboss-doc' in `../emboss-doc_6.4.0-2_all.deb'.
dpkg-deb -Z xz --build debian/emboss-test ..
-dpkg-deb: building package `emboss-test' in `../emboss-test_6.4.0-1_all.deb'.
+dpkg-deb: building package `emboss-test' in `../emboss-test_6.4.0-2_all.deb'.
dpkg-deb -Z xz --build debian/emboss-lib ..
-dpkg-deb: building package `emboss-lib' in `../emboss-lib_6.4.0-1_amd64.deb'.
+dpkg-deb: building package `emboss-lib' in `../emboss-lib_6.4.0-2_amd64.deb'.
dpkg-deb -Z xz --build debian/jemboss ..
-dpkg-deb: building package `jemboss' in `../jemboss_6.4.0-1_all.deb'.
+dpkg-deb: building package `jemboss' in `../jemboss_6.4.0-2_all.deb'.
make[1]: Leaving directory `/«PKGBUILDDIR»'
- dpkg-genchanges >../emboss_6.4.0-1_amd64.changes
-dpkg-genchanges: including full source code in upload
+ dpkg-genchanges >../emboss_6.4.0-2_amd64.changes
+dpkg-genchanges: not including original source code in upload
dpkg-source --after-build emboss-6.4.0
-dpkg-buildpackage: full upload (original source is included)
+dpkg-buildpackage: binary and diff upload (original source NOT included)
────────────────────────────────────────────────────────────────────────────────
-Build finished at 20120620-1912
+Build finished at 20120621-1526
Finished
────────
@@ -11867,15 +11906,15 @@ I: Built successfully
└──────────────────────────────────────────────────────────────────────────────┘
-emboss_6.4.0-1_amd64.changes:
+emboss_6.4.0-2_amd64.changes:
─────────────────────────────
Format: 1.8
-Date: Wed, 20 Jun 2012 18:55:16 +0900
+Date: Thu, 21 Jun 2012 14:31:59 +0900
Source: emboss
Binary: emboss emboss-data emboss-doc emboss-test emboss-lib jemboss
Architecture: source amd64 all
-Version: 6.4.0-1
+Version: 6.4.0-2
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
@@ -11887,83 +11926,59 @@ Description:
emboss-lib - EMBOSS Libraries
emboss-test - test files for the EMBOSS package
jemboss - graphical user interface to EMBOSS
-Closes: 595613 662313
Changes:
- emboss (6.4.0-1) unstable; urgency=low
- .
- [ Charles Plessy ]
- * New upstream release.
- * Removed calls to dh_makeshlibs in debian/rules (closes: #595613).
- * Build on libpng-dev instead of libpng12-dev (closes: #662313).
- * Breaks: EMBASSY <= 6.3.1 (debian/control).
+ emboss (6.4.0-2) unstable; urgency=low
.
- [ Andreas Tille ]
- * debian/upstream: separate reference section
- * debian/rules:
- - Make sure every binary package has a changelog file
- - enable hardening
- - do not clean backup file which is part of upstream tarball
- - remove executable flag from some test data
- - restore executable flag of some jemboss utils which seems to
- be removed by install target
- * debian/control:
- - remove article from description
- - Standards-Version: 3.9.3 (no changes needed)
- * debian/emboss.menu: delete - chances that users will pick command
- line programs from longish menu entries are pretty low
- * debian/emboss-lib.lintian-overrides: Adapted string of lintian
- warning
+ * Separate architecture-dependant and independant targets in debian/rules.
+ This makes the package buildable again on our build farm.
Checksums-Sha1:
- 300786410b42a108de044995ccb963c746961d82 1521 emboss_6.4.0-1.dsc
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- d0eaef2b26b4420609021efbcbc05d9078b45ae2 322918 emboss_6.4.0-1.diff.gz
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
-emboss_6.4.0-1_amd64.deb
+emboss_6.4.0-2_amd64.deb
────────────────────────
new debian package, version 2.0.
- size 1009020 bytes: control archive=16476 bytes.
+ size 1008618 bytes: control archive=16522 bytes.
1301 bytes, 21 lines control
36999 bytes, 579 lines md5sums
383 bytes, 12 lines * postinst #!/bin/sh
324 bytes, 10 lines * postrm #!/bin/sh
Package: emboss
- Version: 6.4.0-1
+ Version: 6.4.0-2
Architecture: amd64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 4156
- Depends: emboss-lib (= 6.4.0-1), libc6 (>= 2.7), libexpat1 (>= 2.0.1), libgd2-noxpm (>= 2.0.36~rc1~dfsg) | libgd2-xpm (>= 2.0.36~rc1~dfsg), libhpdf-2.2.1, libmysqlclient18 (>= 5.5.24+dfsg-1), libpng12-0 (>= 1.2.13-4), libpq5, libx11-6, zlib1g (>= 1:1.1.4), emboss-data (= 6.4.0-1)
+ Installed-Size: 4157
+ Depends: emboss-lib (= 6.4.0-2), libc6 (>= 2.7), libexpat1 (>= 2.0.1), libgd2-noxpm (>= 2.0.36~rc1~dfsg) | libgd2-xpm (>= 2.0.36~rc1~dfsg), libhpdf-2.2.1, libmysqlclient18 (>= 5.5.24+dfsg-1), libpng12-0 (>= 1.2.13-4), libpq5, libx11-6, zlib1g (>= 1:1.1.4), emboss-data (= 6.4.0-2)
Recommends: primer3, dialign
Suggests: emboss-doc, emboss-test, embassy, clustalw
Section: science
@@ -11980,869 +11995,869 @@ emboss_6.4.0-1_amd64.deb
analysis into a seamless whole. EMBOSS breaks the historical trend towards
commercial software packages.
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-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/servertell -> ../lib/emboss/servertell
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/maskambignuc -> ../lib/emboss/maskambignuc
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/dbiblast -> ../lib/emboss/dbiblast
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/whichdb -> ../lib/emboss/whichdb
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/taxget -> ../lib/emboss/taxget
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/ontogetup -> ../lib/emboss/ontogetup
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/chips -> ../lib/emboss/chips
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/pasteseq -> ../lib/emboss/pasteseq
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/trimseq -> ../lib/emboss/trimseq
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/sixpack -> ../lib/emboss/sixpack
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/goname -> ../lib/emboss/goname
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/seealso -> ../lib/emboss/seealso
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/geecee -> ../lib/emboss/geecee
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/einverted -> ../lib/emboss/einverted
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/remap -> ../lib/emboss/remap
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/degapseq -> ../lib/emboss/degapseq
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/edamhasinput -> ../lib/emboss/edamhasinput
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/rebaseextract -> ../lib/emboss/rebaseextract
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/cutseq -> ../lib/emboss/cutseq
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/wordfinder -> ../lib/emboss/wordfinder
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/pepdigest -> ../lib/emboss/pepdigest
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/em_cons -> ../lib/emboss/cons
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/ontoisobsolete -> ../lib/emboss/ontoisobsolete
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/codcopy -> ../lib/emboss/codcopy
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/preg -> ../lib/emboss/preg
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/edamisid -> ../lib/emboss/edamisid
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/eprimer3 -> ../lib/emboss/eprimer3
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/pepstats -> ../lib/emboss/pepstats
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/aligncopy -> ../lib/emboss/aligncopy
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/infoalign -> ../lib/emboss/infoalign
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/seqretsetall -> ../lib/emboss/seqretsetall
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/palindrome -> ../lib/emboss/palindrome
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/newseq -> ../lib/emboss/newseq
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/checktrans -> ../lib/emboss/checktrans
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/plotcon -> ../lib/emboss/plotcon
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/nthseqset -> ../lib/emboss/nthseqset
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/fuzzpro -> ../lib/emboss/fuzzpro
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/infobase -> ../lib/emboss/infobase
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/vectorstrip -> ../lib/emboss/vectorstrip
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/restover -> ../lib/emboss/restover
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/biosed -> ../lib/emboss/biosed
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/dreg -> ../lib/emboss/dreg
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/drfinddata -> ../lib/emboss/drfinddata
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/supermatcher -> ../lib/emboss/supermatcher
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/showalign -> ../lib/emboss/showalign
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/wossparam -> ../lib/emboss/wossparam
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/showpep -> ../lib/emboss/showpep
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/union -> ../lib/emboss/union
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/merger -> ../lib/emboss/merger
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/diffseq -> ../lib/emboss/diffseq
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/seqxrefget -> ../lib/emboss/seqxrefget
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/printsextract -> ../lib/emboss/printsextract
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/wosstopic -> ../lib/emboss/wosstopic
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/entret -> ../lib/emboss/entret
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/tmap -> ../lib/emboss/tmap
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/backtranambig -> ../lib/emboss/backtranambig
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/featcopy -> ../lib/emboss/featcopy
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/infoseq -> ../lib/emboss/infoseq
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/freak -> ../lib/emboss/freak
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/sigcleave -> ../lib/emboss/sigcleave
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/drfindid -> ../lib/emboss/drfindid
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/antigenic -> ../lib/emboss/antigenic
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/polydot -> ../lib/emboss/polydot
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/plotorf -> ../lib/emboss/plotorf
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/consambig -> ../lib/emboss/consambig
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/extractalign -> ../lib/emboss/extractalign
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/seqcount -> ../lib/emboss/seqcount
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/ontogetsibs -> ../lib/emboss/ontogetsibs
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/dbxedam -> ../lib/emboss/dbxedam
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/taxgetspecies -> ../lib/emboss/taxgetspecies
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/matcher -> ../lib/emboss/matcher
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/abiview -> ../lib/emboss/abiview
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/inforesidue -> ../lib/emboss/inforesidue
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/taxgetrank -> ../lib/emboss/taxgetrank
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/banana -> ../lib/emboss/banana
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/profit -> ../lib/emboss/profit
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/cpgplot -> ../lib/emboss/cpgplot
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/cirdna -> ../lib/emboss/cirdna
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/restrict -> ../lib/emboss/restrict
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/ontocount -> ../lib/emboss/ontocount
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/cachedas -> ../lib/emboss/cachedas
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/ontogetroot -> ../lib/emboss/ontogetroot
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/tfextract -> ../lib/emboss/tfextract
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/noreturn -> ../lib/emboss/noreturn
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/featreport -> ../lib/emboss/featreport
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/findkm -> ../lib/emboss/findkm
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/drtext -> ../lib/emboss/drtext
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/splitter -> ../lib/emboss/splitter
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/garnier -> ../lib/emboss/garnier
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/maskfeat -> ../lib/emboss/maskfeat
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/iep -> ../lib/emboss/iep
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/redata -> ../lib/emboss/redata
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/aaindexextract -> ../lib/emboss/aaindexextract
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/taxgetup -> ../lib/emboss/taxgetup
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/showorf -> ../lib/emboss/showorf
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/dotpath -> ../lib/emboss/dotpath
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/ontogetobsolete -> ../lib/emboss/ontogetobsolete
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/em_pscan -> ../lib/emboss/pscan
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/showdb -> ../lib/emboss/showdb
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/dbigcg -> ../lib/emboss/dbigcg
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/jaspscan -> ../lib/emboss/jaspscan
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/edamdef -> ../lib/emboss/edamdef
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/oddcomp -> ../lib/emboss/oddcomp
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/showserver -> ../lib/emboss/showserver
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/jembossctl -> ../lib/emboss/jembossctl
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/showseq -> ../lib/emboss/showseq
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/acdgalaxy -> ../lib/emboss/acdgalaxy
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/dbxresource -> ../lib/emboss/dbxresource
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/extractseq -> ../lib/emboss/extractseq
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/newcpgreport -> ../lib/emboss/newcpgreport
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/wossinput -> ../lib/emboss/wossinput
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/descseq -> ../lib/emboss/descseq
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/yank -> ../lib/emboss/yank
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/emma -> ../lib/emboss/emma
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/wossoutput -> ../lib/emboss/wossoutput
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/eprimer32 -> ../lib/emboss/eprimer32
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/wossdata -> ../lib/emboss/wossdata
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/dbxtax -> ../lib/emboss/dbxtax
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/acdtrace -> ../lib/emboss/acdtrace
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/dbxflat -> ../lib/emboss/dbxflat
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/etandem -> ../lib/emboss/etandem
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/seqmatchall -> ../lib/emboss/seqmatchall
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/edamisformat -> ../lib/emboss/edamisformat
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/dbxobo -> ../lib/emboss/dbxobo
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/twofeat -> ../lib/emboss/twofeat
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/cpgreport -> ../lib/emboss/cpgreport
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/shuffleseq -> ../lib/emboss/shuffleseq
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/cai -> ../lib/emboss/cai
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/trimest -> ../lib/emboss/trimest
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/needleall -> ../lib/emboss/needleall
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/stssearch -> ../lib/emboss/stssearch
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/marscan -> ../lib/emboss/marscan
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/newcpgseek -> ../lib/emboss/newcpgseek
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/skipseq -> ../lib/emboss/skipseq
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/tranalign -> ../lib/emboss/tranalign
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/feattext -> ../lib/emboss/feattext
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/acdvalid -> ../lib/emboss/acdvalid
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/maskambigprot -> ../lib/emboss/maskambigprot
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/mwcontam -> ../lib/emboss/mwcontam
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/wobble -> ../lib/emboss/wobble
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/ontogetdown -> ../lib/emboss/ontogetdown
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/acdpretty -> ../lib/emboss/acdpretty
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/water -> ../lib/emboss/water
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/lindna -> ../lib/emboss/lindna
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/syco -> ../lib/emboss/syco
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/aligncopypair -> ../lib/emboss/aligncopypair
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/urlget -> ../lib/emboss/urlget
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/equicktandem -> ../lib/emboss/equicktandem
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/prettyseq -> ../lib/emboss/prettyseq
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/getorf -> ../lib/emboss/getorf
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/seqret -> ../lib/emboss/seqret
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/skipredundant -> ../lib/emboss/skipredundant
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/nthseq -> ../lib/emboss/nthseq
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/recoder -> ../lib/emboss/recoder
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/wossname -> ../lib/emboss/wossname
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/edamhasoutput -> ../lib/emboss/edamhasoutput
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/dottup -> ../lib/emboss/dottup
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/jaspextract -> ../lib/emboss/jaspextract
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/prosextract -> ../lib/emboss/prosextract
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/edialign -> ../lib/emboss/edialign
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/pepwheel -> ../lib/emboss/pepwheel
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/cacheensembl -> ../lib/emboss/cacheensembl
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/textsearch -> ../lib/emboss/textsearch
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/acdc -> ../lib/emboss/acdc
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/tfm -> ../lib/emboss/tfm
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/dbxcompress -> ../lib/emboss/dbxcompress
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/wordcount -> ../lib/emboss/wordcount
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/backtranseq -> ../lib/emboss/backtranseq
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/transeq -> ../lib/emboss/transeq
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/msbar -> ../lib/emboss/msbar
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/dbtell -> ../lib/emboss/dbtell
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/edamname -> ../lib/emboss/edamname
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/prophecy -> ../lib/emboss/prophecy
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/sirna -> ../lib/emboss/sirna
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/godef -> ../lib/emboss/godef
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/dan -> ../lib/emboss/dan
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/taxgetdown -> ../lib/emboss/taxgetdown
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/showfeat -> ../lib/emboss/showfeat
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/isochore -> ../lib/emboss/isochore
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/mwfilter -> ../lib/emboss/mwfilter
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/drget -> ../lib/emboss/drget
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/notab -> ../lib/emboss/notab
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/pepwindow -> ../lib/emboss/pepwindow
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/ontogetcommon -> ../lib/emboss/ontogetcommon
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/dbiflat -> ../lib/emboss/dbiflat
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/dbxfasta -> ../lib/emboss/dbxfasta
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/est2genome -> ../lib/emboss/est2genome
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/drfindformat -> ../lib/emboss/drfindformat
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/octanol -> ../lib/emboss/octanol
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/revseq -> ../lib/emboss/revseq
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/primersearch -> ../lib/emboss/primersearch
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/cutgextract -> ../lib/emboss/cutgextract
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/silent -> ../lib/emboss/silent
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/psiphi -> ../lib/emboss/psiphi
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/epestfind -> ../lib/emboss/epestfind
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/charge -> ../lib/emboss/charge
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/embossversion -> ../lib/emboss/embossversion
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/dbxuncompress -> ../lib/emboss/dbxuncompress
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/dotmatcher -> ../lib/emboss/dotmatcher
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/pepnet -> ../lib/emboss/pepnet
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/dbxstat -> ../lib/emboss/dbxstat
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/cusp -> ../lib/emboss/cusp
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/dbxgcg -> ../lib/emboss/dbxgcg
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/stretcher -> ../lib/emboss/stretcher
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/pepinfo -> ../lib/emboss/pepinfo
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/ontoget -> ../lib/emboss/ontoget
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/maskseq -> ../lib/emboss/maskseq
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/bin/wossoperation -> ../lib/emboss/wossoperation
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-
-
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+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/pepwheel -> ../lib/emboss/pepwheel
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/cacheensembl -> ../lib/emboss/cacheensembl
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/textsearch -> ../lib/emboss/textsearch
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/acdc -> ../lib/emboss/acdc
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/tfm -> ../lib/emboss/tfm
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/dbxcompress -> ../lib/emboss/dbxcompress
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/wordcount -> ../lib/emboss/wordcount
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/backtranseq -> ../lib/emboss/backtranseq
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/transeq -> ../lib/emboss/transeq
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/msbar -> ../lib/emboss/msbar
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/dbtell -> ../lib/emboss/dbtell
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/edamname -> ../lib/emboss/edamname
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/prophecy -> ../lib/emboss/prophecy
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/sirna -> ../lib/emboss/sirna
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/godef -> ../lib/emboss/godef
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/dan -> ../lib/emboss/dan
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/taxgetdown -> ../lib/emboss/taxgetdown
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/showfeat -> ../lib/emboss/showfeat
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/isochore -> ../lib/emboss/isochore
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/mwfilter -> ../lib/emboss/mwfilter
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/drget -> ../lib/emboss/drget
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/notab -> ../lib/emboss/notab
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/pepwindow -> ../lib/emboss/pepwindow
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/ontogetcommon -> ../lib/emboss/ontogetcommon
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/dbiflat -> ../lib/emboss/dbiflat
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/dbxfasta -> ../lib/emboss/dbxfasta
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/est2genome -> ../lib/emboss/est2genome
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/drfindformat -> ../lib/emboss/drfindformat
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/octanol -> ../lib/emboss/octanol
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/revseq -> ../lib/emboss/revseq
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/primersearch -> ../lib/emboss/primersearch
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/cutgextract -> ../lib/emboss/cutgextract
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/silent -> ../lib/emboss/silent
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/psiphi -> ../lib/emboss/psiphi
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/epestfind -> ../lib/emboss/epestfind
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/charge -> ../lib/emboss/charge
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/embossversion -> ../lib/emboss/embossversion
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/dbxuncompress -> ../lib/emboss/dbxuncompress
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/dotmatcher -> ../lib/emboss/dotmatcher
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/pepnet -> ../lib/emboss/pepnet
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/dbxstat -> ../lib/emboss/dbxstat
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/cusp -> ../lib/emboss/cusp
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/dbxgcg -> ../lib/emboss/dbxgcg
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/stretcher -> ../lib/emboss/stretcher
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/pepinfo -> ../lib/emboss/pepinfo
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/ontoget -> ../lib/emboss/ontoget
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/maskseq -> ../lib/emboss/maskseq
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/wossoperation -> ../lib/emboss/wossoperation
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/prophet -> ../lib/emboss/prophet
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/tfscan -> ../lib/emboss/tfscan
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/cachedbfetch -> ../lib/emboss/cachedbfetch
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/distmat -> ../lib/emboss/distmat
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/seqretsplit -> ../lib/emboss/seqretsplit
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/bin/makeprotseq -> ../lib/emboss/makeprotseq
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/share/man/man1/em_pscan.1e.gz -> pscan.1e.gz
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/share/man/man1/em_cons.1e.gz -> cons.1e.gz
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/share/doc/emboss/ChangeLog.gz -> changelog.gz
+
+
+emboss-data_6.4.0-2_all.deb
───────────────────────────
new debian package, version 2.0.
- size 39003814 bytes: control archive=22049 bytes.
+ size 39003302 bytes: control archive=22054 bytes.
407 bytes, 12 lines control
57974 bytes, 834 lines md5sums
Package: emboss-data
Source: emboss
- Version: 6.4.0-1
+ Version: 6.4.0-2
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 305559
@@ -12853,878 +12868,878 @@ emboss-data_6.4.0-1_all.deb
This package includes data files needed by EMBOSS, the European Molecular
Biology Open Software Suite.
-drwxr-xr-x root/root 0 2012-06-20 19:08 ./
-drwxr-xr-x root/root 0 2012-06-20 19:07 ./usr/
-drwxr-xr-x root/root 0 2012-06-20 19:08 ./usr/share/
-drwxr-xr-x root/root 0 2012-06-20 19:08 ./usr/share/EMBOSS/
--rw-r--r-- root/root 13228 2012-06-20 19:08 ./usr/share/EMBOSS/emboss.standard
--rw-r--r-- root/root 14727 2012-06-20 19:08 ./usr/share/EMBOSS/server.wsdbfetch
--rw-r--r-- root/root 2074 2012-06-20 19:08 ./usr/share/EMBOSS/server.dkfz
-drwxr-xr-x root/root 0 2012-06-20 19:07 ./usr/share/EMBOSS/index/
--rw-r--r-- root/root 509325 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.xde
--rw-r--r-- root/root 183 2012-06-20 19:07 ./usr/share/EMBOSS/index/pw.pxid
--rw-r--r-- root/root 76787 2012-06-20 19:07 ./usr/share/EMBOSS/index/eco.xnm
--rw-r--r-- root/root 186 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.pxde
--rw-r--r-- root/root 339368 2012-06-20 19:07 ./usr/share/EMBOSS/index/so.xnm
--rw-r--r-- root/root 861423 2012-06-20 19:07 ./usr/share/EMBOSS/index/edam.xde
--rw-r--r-- root/root 189 2012-06-20 19:07 ./usr/share/EMBOSS/index/go.pxis
--rw-r--r-- root/root 178 2012-06-20 19:07 ./usr/share/EMBOSS/index/ro.pxde
--rw-r--r-- root/root 191 2012-06-20 19:07 ./usr/share/EMBOSS/index/go.pxnm
--rw-r--r-- root/root 32749 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.xetpc
--rw-r--r-- root/root 186 2012-06-20 19:07 ./usr/share/EMBOSS/index/edam.pxnm
--rw-r--r-- root/root 19739 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.xedat
--rw-r--r-- root/root 12776 2012-06-20 19:07 ./usr/share/EMBOSS/index/edam.xisid
--rw-r--r-- root/root 88772 2012-06-20 19:07 ./usr/share/EMBOSS/index/so.xis
--rw-r--r-- root/root 177 2012-06-20 19:07 ./usr/share/EMBOSS/index/ro.pxis
--rw-r--r-- root/root 59588 2012-06-20 19:07 ./usr/share/EMBOSS/index/pw.xis
--rw-r--r-- root/root 88 2012-06-20 19:07 ./usr/share/EMBOSS/index/ro.ent
--rw-r--r-- root/root 737917 2012-06-20 19:07 ./usr/share/EMBOSS/index/taxon.xac
--rw-r--r-- root/root 5020 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.xrf
--rw-r--r-- root/root 180 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.pxefmt
--rw-r--r-- root/root 181 2012-06-20 19:07 ./usr/share/EMBOSS/index/edam.pxisid
--rw-r--r-- root/root 42081 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.xqin
--rw-r--r-- root/root 912380 2012-06-20 19:07 ./usr/share/EMBOSS/index/pw.xde
--rw-r--r-- root/root 11204 2012-06-20 19:07 ./usr/share/EMBOSS/index/edam.xisfmt
--rw-r--r-- root/root 30359 2012-06-20 19:07 ./usr/share/EMBOSS/index/eco.xac
--rw-r--r-- root/root 184782 2012-06-20 19:07 ./usr/share/EMBOSS/index/pw.xnm
--rw-r--r-- root/root 182 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.pxeid
--rw-r--r-- root/root 182 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.pxedat
--rw-r--r-- root/root 183 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.pxetpc
--rw-r--r-- root/root 189 2012-06-20 19:07 ./usr/share/EMBOSS/index/pw.pxde
--rw-r--r-- root/root 182 2012-06-20 19:07 ./usr/share/EMBOSS/index/edam.pxhasin
--rw-r--r-- root/root 12044 2012-06-20 19:07 ./usr/share/EMBOSS/index/edam.xhasin
--rw-r--r-- root/root 186 2012-06-20 19:07 ./usr/share/EMBOSS/index/edam.pxid
--rw-r--r-- root/root 16384 2012-06-20 19:07 ./usr/share/EMBOSS/index/ro.xac
--rw-r--r-- root/root 13816644 2012-06-20 19:07 ./usr/share/EMBOSS/index/go.xde
--rw-r--r-- root/root 34655 2012-06-20 19:07 ./usr/share/EMBOSS/index/pw.xid
--rw-r--r-- root/root 8964472 2012-06-20 19:07 ./usr/share/EMBOSS/index/taxon.xrnk
--rw-r--r-- root/root 5454 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.xsoap
--rw-r--r-- root/root 183 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.pxid
--rw-r--r-- root/root 181 2012-06-20 19:07 ./usr/share/EMBOSS/index/ro.pxac
--rw-r--r-- root/root 181 2012-06-20 19:07 ./usr/share/EMBOSS/index/edam.pxisfmt
--rw-r--r-- root/root 7546 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.xefmt
--rw-r--r-- root/root 2504535 2012-06-20 19:07 ./usr/share/EMBOSS/index/go.xac
--rw-r--r-- root/root 191 2012-06-20 19:07 ./usr/share/EMBOSS/index/go.pxde
--rw-r--r-- root/root 247753 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.xqurl
--rw-r--r-- root/root 185 2012-06-20 19:07 ./usr/share/EMBOSS/index/edam.pxis
--rw-r--r-- root/root 186 2012-06-20 19:07 ./usr/share/EMBOSS/index/pw.pxnm
--rw-r--r-- root/root 185 2012-06-20 19:07 ./usr/share/EMBOSS/index/pw.pxis
--rw-r--r-- root/root 178 2012-06-20 19:07 ./usr/share/EMBOSS/index/ro.pxid
--rw-r--r-- root/root 28885180 2012-06-20 19:07 ./usr/share/EMBOSS/index/taxon.xid
--rw-r--r-- root/root 99 2012-06-20 19:07 ./usr/share/EMBOSS/index/eco.ent
--rw-r--r-- root/root 180 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.pxqfmt
--rw-r--r-- root/root 58897689 2012-06-20 19:07 ./usr/share/EMBOSS/index/taxon.xtax
--rw-r--r-- root/root 6047464 2012-06-20 19:07 ./usr/share/EMBOSS/index/go.xnm
--rw-r--r-- root/root 185 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.pxurl
--rw-r--r-- root/root 187 2012-06-20 19:07 ./usr/share/EMBOSS/index/edam.pxac
--rw-r--r-- root/root 90 2012-06-20 19:07 ./usr/share/EMBOSS/index/edam.ent
--rw-r--r-- root/root 99 2012-06-20 19:07 ./usr/share/EMBOSS/index/taxon.ent
--rw-r--r-- root/root 7836 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.xcat
--rw-r--r-- root/root 186 2012-06-20 19:07 ./usr/share/EMBOSS/index/taxon.pxmgc
--rw-r--r-- root/root 186 2012-06-20 19:07 ./usr/share/EMBOSS/index/pw.pxac
--rw-r--r-- root/root 181 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.pxtaxid
--rw-r--r-- root/root 107552 2012-06-20 19:07 ./usr/share/EMBOSS/index/edam.xid
--rw-r--r-- root/root 1292180 2012-06-20 19:07 ./usr/share/EMBOSS/index/go.xid
--rw-r--r-- root/root 183 2012-06-20 19:07 ./usr/share/EMBOSS/index/edam.pxhasout
--rw-r--r-- root/root 194 2012-06-20 19:07 ./usr/share/EMBOSS/index/taxon.pxtax
--rw-r--r-- root/root 185 2012-06-20 19:07 ./usr/share/EMBOSS/index/taxon.pxgc
--rw-r--r-- root/root 4096 2012-06-20 19:07 ./usr/share/EMBOSS/index/ro.xde
--rw-r--r-- root/root 33895 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.xeid
--rw-r--r-- root/root 8963308 2012-06-20 19:07 ./usr/share/EMBOSS/index/taxon.xgc
--rw-r--r-- root/root 181 2012-06-20 19:07 ./usr/share/EMBOSS/index/edam.pxns
--rw-r--r-- root/root 179 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.pxrf
--rw-r--r-- root/root 185 2012-06-20 19:07 ./usr/share/EMBOSS/index/so.pxid
--rw-r--r-- root/root 185 2012-06-20 19:07 ./usr/share/EMBOSS/index/so.pxis
--rw-r--r-- root/root 22265 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.xtaxid
--rw-r--r-- root/root 103 2012-06-20 19:07 ./usr/share/EMBOSS/index/go.ent
--rw-r--r-- root/root 5642511 2012-06-20 19:07 ./usr/share/EMBOSS/index/taxon.xmgc
--rw-r--r-- root/root 8192 2012-06-20 19:07 ./usr/share/EMBOSS/index/ro.xnm
--rw-r--r-- root/root 188 2012-06-20 19:07 ./usr/share/EMBOSS/index/taxon.pxac
--rw-r--r-- root/root 188 2012-06-20 19:07 ./usr/share/EMBOSS/index/so.pxnm
--rw-r--r-- root/root 185 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.pxqurl
--rw-r--r-- root/root 91 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.ent
--rw-r--r-- root/root 179 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.pxsoap
--rw-r--r-- root/root 2048 2012-06-20 19:07 ./usr/share/EMBOSS/index/ro.xid
--rw-r--r-- root/root 217374 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.xurl
--rw-r--r-- root/root 151763 2012-06-20 19:07 ./usr/share/EMBOSS/index/eco.xde
--rw-r--r-- root/root 186 2012-06-20 19:07 ./usr/share/EMBOSS/index/taxon.pxrnk
--rw-r--r-- root/root 72780 2012-06-20 19:07 ./usr/share/EMBOSS/index/pw.xac
--rw-r--r-- root/root 47416 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.xqout
--rw-r--r-- root/root 188 2012-06-20 19:07 ./usr/share/EMBOSS/index/so.pxde
--rw-r--r-- root/root 88 2012-06-20 19:07 ./usr/share/EMBOSS/index/so.ent
--rw-r--r-- root/root 2220728 2012-06-20 19:07 ./usr/share/EMBOSS/index/go.xis
--rw-r--r-- root/root 188 2012-06-20 19:07 ./usr/share/EMBOSS/index/edam.pxde
--rw-r--r-- root/root 17216 2012-06-20 19:07 ./usr/share/EMBOSS/index/eco.xis
--rw-r--r-- root/root 121979 2012-06-20 19:07 ./usr/share/EMBOSS/index/so.xac
--rw-r--r-- root/root 182 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.pxqin
--rw-r--r-- root/root 189 2012-06-20 19:07 ./usr/share/EMBOSS/index/go.pxid
--rw-r--r-- root/root 182 2012-06-20 19:07 ./usr/share/EMBOSS/index/eco.pxis
--rw-r--r-- root/root 188 2012-06-20 19:07 ./usr/share/EMBOSS/index/so.pxac
--rw-r--r-- root/root 8948 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.xqfmt
--rw-r--r-- root/root 2048 2012-06-20 19:07 ./usr/share/EMBOSS/index/ro.xis
--rw-r--r-- root/root 166116 2012-06-20 19:07 ./usr/share/EMBOSS/index/edam.xac
--rw-r--r-- root/root 141248 2012-06-20 19:07 ./usr/share/EMBOSS/index/edam.xis
--rw-r--r-- root/root 192 2012-06-20 19:07 ./usr/share/EMBOSS/index/go.pxac
--rw-r--r-- root/root 183 2012-06-20 19:07 ./usr/share/EMBOSS/index/go.pxns
--rw-r--r-- root/root 37769 2012-06-20 19:07 ./usr/share/EMBOSS/index/edam.xns
--rw-r--r-- root/root 186 2012-06-20 19:07 ./usr/share/EMBOSS/index/eco.pxnm
--rw-r--r-- root/root 180 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.pxcat
--rw-r--r-- root/root 437512 2012-06-20 19:07 ./usr/share/EMBOSS/index/go.xns
--rw-r--r-- root/root 314877 2012-06-20 19:07 ./usr/share/EMBOSS/index/edam.xnm
--rw-r--r-- root/root 27318 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.xid
--rw-r--r-- root/root 10748 2012-06-20 19:07 ./usr/share/EMBOSS/index/eco.xid
--rw-r--r-- root/root 7208 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.xrest
--rw-r--r-- root/root 191 2012-06-20 19:07 ./usr/share/EMBOSS/index/taxon.pxup
--rw-r--r-- root/root 180 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.pxac
--rw-r--r-- root/root 33068 2012-06-20 19:07 ./usr/share/EMBOSS/index/edam.xhasout
--rw-r--r-- root/root 185 2012-06-20 19:07 ./usr/share/EMBOSS/index/eco.pxac
--rw-r--r-- root/root 178 2012-06-20 19:07 ./usr/share/EMBOSS/index/ro.pxnm
--rw-r--r-- root/root 3732 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.xac
--rw-r--r-- root/root 191 2012-06-20 19:07 ./usr/share/EMBOSS/index/taxon.pxid
--rw-r--r-- root/root 186 2012-06-20 19:07 ./usr/share/EMBOSS/index/eco.pxde
--rw-r--r-- root/root 93 2012-06-20 19:07 ./usr/share/EMBOSS/index/pw.ent
--rw-r--r-- root/root 179 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.pxrest
--rw-r--r-- root/root 183 2012-06-20 19:07 ./usr/share/EMBOSS/index/eco.pxid
--rw-r--r-- root/root 182 2012-06-20 19:07 ./usr/share/EMBOSS/index/drcat.pxqout
--rw-r--r-- root/root 792080 2012-06-20 19:07 ./usr/share/EMBOSS/index/so.xde
--rw-r--r-- root/root 23876286 2012-06-20 19:07 ./usr/share/EMBOSS/index/taxon.xup
--rw-r--r-- root/root 75560 2012-06-20 19:07 ./usr/share/EMBOSS/index/so.xid
-drwxr-xr-x root/root 0 2012-06-20 19:07 ./usr/share/EMBOSS/acd/
--rw-r--r-- root/root 2678 2012-06-20 19:07 ./usr/share/EMBOSS/acd/edamisid.acd
--rw-r--r-- root/root 708 2012-06-20 19:07 ./usr/share/EMBOSS/acd/featcopy.acd
--rw-r--r-- root/root 1944 2012-06-20 19:07 ./usr/share/EMBOSS/acd/tfscan.acd
--rw-r--r-- root/root 3366 2012-06-20 19:07 ./usr/share/EMBOSS/acd/diffseq.acd
--rw-r--r-- root/root 1494 2012-06-20 19:07 ./usr/share/EMBOSS/acd/descseq.acd
--rw-r--r-- root/root 36724 2012-06-20 19:07 ./usr/share/EMBOSS/acd/eprimer3.acd
--rw-r--r-- root/root 2125 2012-06-20 19:07 ./usr/share/EMBOSS/acd/wordmatch.acd
--rw-r--r-- root/root 2369 2012-06-20 19:07 ./usr/share/EMBOSS/acd/einverted.acd
--rw-r--r-- root/root 707 2012-06-20 19:07 ./usr/share/EMBOSS/acd/feattext.acd
--rw-r--r-- root/root 5506 2012-06-20 19:07 ./usr/share/EMBOSS/acd/cirdna.acd
--rw-r--r-- root/root 914 2012-06-20 19:07 ./usr/share/EMBOSS/acd/taxgetdown.acd
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-rw-r--r-- root/root 61626 2011-07-16 23:04 ./usr/share/doc/emboss-data/changelog.gz
--rw-r--r-- root/root 9073 2012-06-20 19:00 ./usr/share/doc/emboss-data/copyright
--rw-r--r-- root/root 6841 2012-06-20 19:00 ./usr/share/doc/emboss-data/changelog.Debian.gz
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/share/doc/emboss-data/ChangeLog.gz -> changelog.gz
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-emboss-doc_6.4.0-1_all.deb
+emboss-doc_6.4.0-2_all.deb
──────────────────────────
new debian package, version 2.0.
- size 3695132 bytes: control archive=18027 bytes.
+ size 3695184 bytes: control archive=18028 bytes.
449 bytes, 13 lines control
54468 bytes, 644 lines md5sums
Package: emboss-doc
Source: emboss
- Version: 6.4.0-1
+ Version: 6.4.0-2
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 15538
@@ -13736,681 +13751,681 @@ emboss-doc_6.4.0-1_all.deb
This package includes non-essential user documentation for EMBOSS, the
European Molecular Biology Open Software Suite.
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+-rw-r--r-- root/root 1034 2012-06-21 15:22 ./usr/share/EMBOSS/doc/programs/html/phylogeny_tree_drawing_group.html
+drwxr-xr-x root/root 0 2012-06-21 15:22 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-06-21 15:22 ./usr/share/doc/emboss-doc/
-rw-r--r-- root/root 61626 2011-07-16 23:04 ./usr/share/doc/emboss-doc/changelog.gz
--rw-r--r-- root/root 9073 2012-06-20 19:00 ./usr/share/doc/emboss-doc/copyright
--rw-r--r-- root/root 6841 2012-06-20 19:00 ./usr/share/doc/emboss-doc/changelog.Debian.gz
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/share/doc/emboss-doc/doc -> ../../EMBOSS/doc
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/share/doc/emboss-doc/ChangeLog.gz -> changelog.gz
+-rw-r--r-- root/root 9073 2012-06-21 15:12 ./usr/share/doc/emboss-doc/copyright
+-rw-r--r-- root/root 6905 2012-06-21 15:12 ./usr/share/doc/emboss-doc/changelog.Debian.gz
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/share/doc/emboss-doc/doc -> ../../EMBOSS/doc
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/share/doc/emboss-doc/ChangeLog.gz -> changelog.gz
-emboss-test_6.4.0-1_all.deb
+emboss-test_6.4.0-2_all.deb
───────────────────────────
new debian package, version 2.0.
- size 4432692 bytes: control archive=51832 bytes.
+ size 4431600 bytes: control archive=51936 bytes.
35 bytes, 1 lines conffiles
542 bytes, 17 lines control
- 234731 bytes, 2849 lines md5sums
+ 235043 bytes, 2853 lines md5sums
Package: emboss-test
Source: emboss
- Version: 6.4.0-1
+ Version: 6.4.0-2
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
- Installed-Size: 29227
+ Installed-Size: 29232
Recommends: tcsh | csh | c-shell
Suggests: valgrind
Section: misc
@@ -14423,16 +14438,16 @@ emboss-test_6.4.0-1_all.deb
It is a good idea to use the data from this package for your bug reports when
possible.
-drwxr-xr-x root/root 0 2012-06-20 19:08 ./
-drwxr-xr-x root/root 0 2012-06-20 19:07 ./etc/
-drwxr-xr-x root/root 0 2012-06-20 19:07 ./etc/emboss/
-drwxr-xr-x root/root 0 2012-06-20 19:08 ./etc/emboss/embossrc.d/
--rw-r--r-- root/root 19225 2012-06-20 19:08 ./etc/emboss/embossrc.d/emboss-test
-drwxr-xr-x root/root 0 2012-06-20 19:07 ./usr/
-drwxr-xr-x root/root 0 2012-06-20 19:08 ./usr/share/
-drwxr-xr-x root/root 0 2012-06-20 19:08 ./usr/share/EMBOSS/
-drwxr-xr-x root/root 0 2012-06-20 19:08 ./usr/share/EMBOSS/test/
-drwxr-xr-x root/root 0 2012-06-20 19:00 ./usr/share/EMBOSS/test/embl/
+drwxr-xr-x root/root 0 2012-06-21 15:22 ./
+drwxr-xr-x root/root 0 2012-06-21 15:21 ./etc/
+drwxr-xr-x root/root 0 2012-06-21 15:21 ./etc/emboss/
+drwxr-xr-x root/root 0 2012-06-21 15:22 ./etc/emboss/embossrc.d/
+-rw-r--r-- root/root 19225 2012-06-21 15:22 ./etc/emboss/embossrc.d/emboss-test
+drwxr-xr-x root/root 0 2012-06-21 15:21 ./usr/
+drwxr-xr-x root/root 0 2012-06-21 15:22 ./usr/share/
+drwxr-xr-x root/root 0 2012-06-21 15:22 ./usr/share/EMBOSS/
+drwxr-xr-x root/root 0 2012-06-21 15:22 ./usr/share/EMBOSS/test/
+drwxr-xr-x root/root 0 2012-06-21 15:13 ./usr/share/EMBOSS/test/embl/
-rw-r--r-- root/root 10765 2011-07-16 23:04 ./usr/share/EMBOSS/test/embl/eem_htginv1.ref
-rw-r--r-- root/root 916 2011-07-16 23:04 ./usr/share/EMBOSS/test/embl/acnum.hit
-rw-r--r-- root/root 2080 2011-07-16 23:04 ./usr/share/EMBOSS/test/embl/des.hit
@@ -14446,7 +14461,7 @@ drwxr-xr-x root/root 0 2012-06-20 19:00 ./usr/share/EMBOSS/test/embl/
-rw-r--r-- root/root 5025 2011-07-16 23:04 ./usr/share/EMBOSS/test/embl/taxon.trg
-rw-r--r-- root/root 1378 2011-07-16 23:04 ./usr/share/EMBOSS/test/embl/eem_ro.seq
-rw-r--r-- root/root 1182 2011-07-16 23:04 ./usr/share/EMBOSS/test/embl/seqvn.trg
--rw-r--r-- root/root 14105 2012-06-20 19:00 ./usr/share/EMBOSS/test/embl/Makefile
+-rw-r--r-- root/root 14105 2012-06-21 15:13 ./usr/share/EMBOSS/test/embl/Makefile
-rw-r--r-- root/root 259 2011-07-16 23:04 ./usr/share/EMBOSS/test/embl/eem_fun.seq
-rw-r--r-- root/root 432 2011-07-16 23:04 ./usr/share/EMBOSS/test/embl/eem_vi.seq
-rw-r--r-- root/root 1948 2011-07-16 23:04 ./usr/share/EMBOSS/test/embl/outfile.dbiflat
@@ -14477,7 +14492,7 @@ drwxr-xr-x root/root 0 2012-06-20 19:00 ./usr/share/EMBOSS/test/embl/
-rw-r--r-- root/root 2732 2011-07-16 23:04 ./usr/share/EMBOSS/test/embl/acnum.trg
-rw-r--r-- root/root 3406 2011-07-16 23:04 ./usr/share/EMBOSS/test/embl/eem_est.ref
-rw-r--r-- root/root 22257 2011-07-16 23:04 ./usr/share/EMBOSS/test/embl/eem_in.ref
-drwxr-xr-x root/root 0 2012-06-20 19:00 ./usr/share/EMBOSS/test/genbank/
+drwxr-xr-x root/root 0 2012-06-21 15:13 ./usr/share/EMBOSS/test/genbank/
-rw-r--r-- root/root 97841 2011-07-16 23:04 ./usr/share/EMBOSS/test/genbank/gbinv1.seq
-rw-r--r-- root/root 620 2011-07-16 23:04 ./usr/share/EMBOSS/test/genbank/acnum.hit
-rw-r--r-- root/root 6727 2011-07-16 23:04 ./usr/share/EMBOSS/test/genbank/gbpln2.seq
@@ -14493,7 +14508,7 @@ drwxr-xr-x root/root 0 2012-06-20 19:00 ./usr/share/EMBOSS/test/genbank/
-rw-r--r-- root/root 9698 2011-07-16 23:04 ./usr/share/EMBOSS/test/genbank/gbrod1.seq
-rw-r--r-- root/root 19086 2011-07-16 23:04 ./usr/share/EMBOSS/test/genbank/gbvrt.seq
-rw-r--r-- root/root 1704 2011-07-16 23:04 ./usr/share/EMBOSS/test/genbank/seqvn.trg
--rw-r--r-- root/root 14154 2012-06-20 19:00 ./usr/share/EMBOSS/test/genbank/Makefile
+-rw-r--r-- root/root 14154 2012-06-21 15:13 ./usr/share/EMBOSS/test/genbank/Makefile
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-rw-r--r-- root/root 612 2011-07-16 23:04 ./usr/share/EMBOSS/test/genbank/seqvn.hit
-rw-r--r-- root/root 71198 2011-07-16 23:04 ./usr/share/EMBOSS/test/genbank/gbbct1.seq
@@ -14581,8 +14596,8 @@ drwxr-xr-x root/root 0 2011-07-16 23:04 ./usr/share/EMBOSS/test/acd/
-rw-r--r-- root/root 522 2011-07-16 23:04 ./usr/share/EMBOSS/test/acd/testassoc.acd
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--rw-r--r-- root/root 19046 2012-06-20 19:00 ./usr/share/EMBOSS/test/Makefile
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-rw-r--r-- root/root 73 2011-07-16 23:04 ./usr/share/EMBOSS/test/data/good.list
@@ -14740,7 +14755,7 @@ drwxr-xr-x root/root 0 2011-07-16 23:04 ./usr/share/EMBOSS/test/data/str
-rw-r--r-- root/root 140 2011-07-16 23:04 ./usr/share/EMBOSS/test/data/swnew.pin
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--rw-r--r-- root/root 14940 2012-06-20 19:00 ./usr/share/EMBOSS/test/data/Makefile
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drwxr-xr-x root/root 0 2011-07-16 23:04 ./usr/share/EMBOSS/test/data/cbs/
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@@ -15071,8 +15086,8 @@ drwxr-xr-x root/root 0 2011-07-16 23:04 ./usr/share/EMBOSS/test/data/hmm
-rw-r--r-- root/root 40 2011-07-16 23:04 ./usr/share/EMBOSS/test/data/uglylast.list
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--rw-r--r-- root/root 55 2012-06-20 19:05 ./usr/share/EMBOSS/test/qatest.cmd
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-rw-r--r-- root/root 1576 2011-07-16 23:04 ./usr/share/EMBOSS/test/pir/des.hit
@@ -15086,7 +15101,7 @@ drwxr-xr-x root/root 0 2012-06-20 19:00 ./usr/share/EMBOSS/test/pir/
-rw-r--r-- root/root 7772 2011-07-16 23:04 ./usr/share/EMBOSS/test/pir/pir1.seq
-rw-r--r-- root/root 144 2011-07-16 23:04 ./usr/share/EMBOSS/test/pir/pir3.offset
-rw-r--r-- root/root 300 2011-07-16 23:04 ./usr/share/EMBOSS/test/pir/seqvn.trg
--rw-r--r-- root/root 14312 2012-06-20 19:00 ./usr/share/EMBOSS/test/pir/Makefile
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-rw-r--r-- root/root 130 2011-07-16 23:04 ./usr/share/EMBOSS/test/pir/pir2.header
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-rw-r--r-- root/root 112 2011-07-16 23:04 ./usr/share/EMBOSS/test/pir/pir2.numbers
@@ -15113,7 +15128,7 @@ drwxr-xr-x root/root 0 2012-06-20 19:00 ./usr/share/EMBOSS/test/pir/
-rw-r--r-- root/root 1392 2011-07-16 23:04 ./usr/share/EMBOSS/test/pir/acnum.trg
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-rw-r--r-- root/root 26091 2011-07-16 23:04 ./usr/share/EMBOSS/test/swnew/trembl.dat
-rw-r--r-- root/root 536 2011-07-16 23:04 ./usr/share/EMBOSS/test/swnew/des.hit
@@ -15122,7 +15137,7 @@ drwxr-xr-x root/root 0 2012-06-20 19:00 ./usr/share/EMBOSS/test/swnew/
-rw-r--r-- root/root 13569 2011-07-16 23:04 ./usr/share/EMBOSS/test/swnew/Makefile.in
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-rw-r--r-- root/root 444 2011-07-16 23:04 ./usr/share/EMBOSS/test/swnew/seqvn.trg
--rw-r--r-- root/root 14025 2012-06-20 19:00 ./usr/share/EMBOSS/test/swnew/Makefile
+-rw-r--r-- root/root 14025 2012-06-21 15:13 ./usr/share/EMBOSS/test/swnew/Makefile
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-rw-r--r-- root/root 336 2011-07-16 23:04 ./usr/share/EMBOSS/test/swnew/seqvn.hit
-rw-r--r-- root/root 498 2011-07-16 23:04 ./usr/share/EMBOSS/test/swnew/entrynam.idx
@@ -15131,14 +15146,14 @@ drwxr-xr-x root/root 0 2012-06-20 19:00 ./usr/share/EMBOSS/test/swnew/
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-rw-r--r-- root/root 1402 2011-07-16 23:04 ./usr/share/EMBOSS/test/swnew/des.trg
-rw-r--r-- root/root 426 2011-07-16 23:04 ./usr/share/EMBOSS/test/swnew/acnum.trg
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-rw-r--r-- root/root 488 2011-07-16 23:04 ./usr/share/EMBOSS/test/testdb/testdb.fasta
-rw-r--r-- root/root 412 2011-07-16 23:04 ./usr/share/EMBOSS/test/testdb/des.hit
-rw-r--r-- root/root 322 2011-07-16 23:04 ./usr/share/EMBOSS/test/testdb/division.lkp
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-rw-r--r-- root/root 860 2011-07-16 23:04 ./usr/share/EMBOSS/test/testdb/outfile.dbifasta
--rw-r--r-- root/root 13929 2012-06-20 19:00 ./usr/share/EMBOSS/test/testdb/Makefile
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-rw-r--r-- root/root 412 2011-07-16 23:04 ./usr/share/EMBOSS/test/testdb/des.trg
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+-rw-r--r-- root/root 224 2012-06-21 15:19 ./usr/share/EMBOSS/test/qa/abiview-ex/stderr
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-rw-r--r-- root/root 1669 2011-07-16 23:04 ./usr/share/EMBOSS/test/valgrind.supp
-rw-r--r-- root/root 608660 2011-07-16 23:04 ./usr/share/EMBOSS/test/qatest.dat
drwxr-xr-x root/root 0 2011-07-16 23:04 ./usr/share/EMBOSS/test/gb/
@@ -17726,7 +17746,7 @@ drwxr-xr-x root/root 0 2011-07-16 23:04 ./usr/share/EMBOSS/test/gb/
-rw-r--r-- root/root 620 2011-07-16 23:04 ./usr/share/EMBOSS/test/gb/acnum.trg
-rw-r--r-- root/root 44577 2011-07-16 23:04 ./usr/share/EMBOSS/test/gb/ba.ref
-rw-r--r-- root/root 8348 2011-07-16 23:04 ./usr/share/EMBOSS/test/gb/ba.seq
-drwxr-xr-x root/root 0 2012-06-20 19:00 ./usr/share/EMBOSS/test/swiss/
+drwxr-xr-x root/root 0 2012-06-21 15:13 ./usr/share/EMBOSS/test/swiss/
-rw-r--r-- root/root 1188 2011-07-16 23:04 ./usr/share/EMBOSS/test/swiss/acnum.hit
-rw-r--r-- root/root 3364 2011-07-16 23:04 ./usr/share/EMBOSS/test/swiss/des.hit
-rw-r--r-- root/root 322 2011-07-16 23:04 ./usr/share/EMBOSS/test/swiss/division.lkp
@@ -17734,7 +17754,7 @@ drwxr-xr-x root/root 0 2012-06-20 19:00 ./usr/share/EMBOSS/test/swiss/
-rw-r--r-- root/root 13542 2011-07-16 23:04 ./usr/share/EMBOSS/test/swiss/Makefile.in
-rw-r--r-- root/root 14100 2011-07-16 23:04 ./usr/share/EMBOSS/test/swiss/taxon.trg
-rw-r--r-- root/root 1900 2011-07-16 23:04 ./usr/share/EMBOSS/test/swiss/seqvn.trg
--rw-r--r-- root/root 13998 2012-06-20 19:00 ./usr/share/EMBOSS/test/swiss/Makefile
+-rw-r--r-- root/root 13998 2012-06-21 15:13 ./usr/share/EMBOSS/test/swiss/Makefile
-rw-r--r-- root/root 1004 2011-07-16 23:04 ./usr/share/EMBOSS/test/swiss/outfile.dbiflat
-rw-r--r-- root/root 700 2011-07-16 23:04 ./usr/share/EMBOSS/test/swiss/seqvn.hit
-rw-r--r-- root/root 2400 2011-07-16 23:04 ./usr/share/EMBOSS/test/swiss/entrynam.idx
@@ -17744,19 +17764,19 @@ drwxr-xr-x root/root 0 2012-06-20 19:00 ./usr/share/EMBOSS/test/swiss/
-rw-r--r-- root/root 836577 2011-07-16 23:04 ./usr/share/EMBOSS/test/swiss/seq.dat
-rw-r--r-- root/root 5575 2011-07-16 23:04 ./usr/share/EMBOSS/test/swiss/des.trg
-rw-r--r-- root/root 3072 2011-07-16 23:04 ./usr/share/EMBOSS/test/swiss/acnum.trg
-drwxr-xr-x root/root 0 2012-06-20 19:08 ./usr/share/doc/
-drwxr-xr-x root/root 0 2012-06-20 19:08 ./usr/share/doc/emboss-test/
+drwxr-xr-x root/root 0 2012-06-21 15:22 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-06-21 15:22 ./usr/share/doc/emboss-test/
-rw-r--r-- root/root 61626 2011-07-16 23:04 ./usr/share/doc/emboss-test/changelog.gz
--rw-r--r-- root/root 9073 2012-06-20 19:00 ./usr/share/doc/emboss-test/copyright
--rw-r--r-- root/root 6841 2012-06-20 19:00 ./usr/share/doc/emboss-test/changelog.Debian.gz
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/share/doc/emboss-test/ChangeLog.gz -> changelog.gz
+-rw-r--r-- root/root 9073 2012-06-21 15:12 ./usr/share/doc/emboss-test/copyright
+-rw-r--r-- root/root 6905 2012-06-21 15:12 ./usr/share/doc/emboss-test/changelog.Debian.gz
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/share/doc/emboss-test/ChangeLog.gz -> changelog.gz
-emboss-lib_6.4.0-1_amd64.deb
+emboss-lib_6.4.0-2_amd64.deb
────────────────────────────
new debian package, version 2.0.
- size 2823028 bytes: control archive=7616 bytes.
+ size 2822990 bytes: control archive=7613 bytes.
1701 bytes, 30 lines control
16594 bytes, 238 lines md5sums
135 bytes, 7 lines * postinst #!/bin/sh
@@ -17764,7 +17784,7 @@ emboss-lib_6.4.0-1_amd64.deb
180 bytes, 8 lines shlibs
Package: emboss-lib
Source: emboss
- Version: 6.4.0-1
+ Version: 6.4.0-2
Architecture: amd64
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 14233
@@ -17793,289 +17813,289 @@ emboss-lib_6.4.0-1_amd64.deb
.
In Debian, these libraries are to be considered private.
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-drwxr-xr-x root/root 0 2012-06-20 19:08 ./usr/
-drwxr-xr-x root/root 0 2012-06-20 19:08 ./usr/lib/
-drwxr-xr-x root/root 0 2012-06-20 19:08 ./usr/lib/emboss/
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--rw-r--r-- root/root 3744260 2012-06-20 19:08 ./usr/lib/emboss/lib/libajax.a
--rw-r--r-- root/root 625814 2012-06-20 19:08 ./usr/lib/emboss/lib/libeplplot.a
--rw-r--r-- root/root 203816 2012-06-20 19:08 ./usr/lib/emboss/lib/libajaxdb.so.6.0.4
--rw-r--r-- root/root 405624 2012-06-20 19:08 ./usr/lib/emboss/lib/libacd.so.6.0.4
--rw-r--r-- root/root 112464 2012-06-20 19:08 ./usr/lib/emboss/lib/libajaxg.so.6.0.4
--rw-r--r-- root/root 351048 2012-06-20 19:08 ./usr/lib/emboss/lib/libnucleus.so.6.0.4
--rw-r--r-- root/root 1865382 2012-06-20 19:08 ./usr/lib/emboss/lib/libensembl.a
--rw-r--r-- root/root 123182 2012-06-20 19:08 ./usr/lib/emboss/lib/libepcre.a
--rw-r--r-- root/root 355004 2012-06-20 19:08 ./usr/lib/emboss/lib/libajaxdb.a
--rw-r--r-- root/root 1121032 2012-06-20 19:08 ./usr/lib/emboss/lib/libensembl.so.6.0.4
--rw-r--r-- root/root 643744 2012-06-20 19:08 ./usr/lib/emboss/lib/libacd.a
--rw-r--r-- root/root 2053256 2012-06-20 19:08 ./usr/lib/emboss/lib/libajax.so.6.0.4
--rw-r--r-- root/root 80008 2012-06-20 19:08 ./usr/lib/emboss/lib/libepcre.so.7.0.9
--rw-r--r-- root/root 391016 2012-06-20 19:08 ./usr/lib/emboss/lib/libeplplot.so.3.2.7
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--rw-r--r-- root/root 598824 2012-06-20 19:08 ./usr/lib/emboss/lib/libnucleus.a
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--rw-r--r-- root/root 4189 2012-06-20 19:08 ./usr/lib/emboss/include/ensgvsource.h
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--rw-r--r-- root/root 4673 2012-06-20 19:08 ./usr/lib/emboss/include/ensprotein.h
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--rw-r--r-- root/root 8044 2012-06-20 19:08 ./usr/lib/emboss/include/ensqcsubmission.h
--rw-r--r-- root/root 11158 2012-06-20 19:08 ./usr/lib/emboss/include/ensvariation.h
--rw-r--r-- root/root 9817 2012-06-20 19:08 ./usr/lib/emboss/include/ajsql.h
--rw-r--r-- root/root 1451 2012-06-20 19:08 ./usr/lib/emboss/include/ajtaxread.h
--rw-r--r-- root/root 8393 2012-06-20 19:08 ./usr/lib/emboss/include/ajseqwrite.h
--rw-r--r-- root/root 1724 2012-06-20 19:08 ./usr/lib/emboss/include/ajresourceread.h
--rw-r--r-- root/root 910 2012-06-20 19:08 ./usr/lib/emboss/include/emboss.h
--rw-r--r-- root/root 10592 2012-06-20 19:08 ./usr/lib/emboss/include/ensqcalignment.h
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--rw-r--r-- root/root 620 2012-06-20 19:08 ./usr/lib/emboss/include/ajurlwrite.h
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--rw-r--r-- root/root 49373 2012-06-20 19:08 ./usr/lib/emboss/include/ensdata.h
--rw-r--r-- root/root 2334 2012-06-20 19:08 ./usr/lib/emboss/include/ajtime.h
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--rw-r--r-- root/root 35448 2012-06-20 19:08 ./usr/lib/emboss/include/ajindex.h
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--rw-r--r-- root/root 5291 2012-06-20 19:08 ./usr/lib/emboss/include/ensdatabaseconnection.h
--rw-r--r-- root/root 1569 2012-06-20 19:08 ./usr/lib/emboss/include/ajseqtype.h
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--rw-r--r-- root/root 4778 2012-06-20 19:08 ./usr/lib/emboss/include/enskaryotype.h
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-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/lib/emboss/lib/libnucleus.so -> libnucleus.so.6.0.4
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/lib/emboss/lib/libacd.so -> libacd.so.6.0.4
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/lib/emboss/lib/libepcre.so -> libepcre.so.7.0.9
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/lib/emboss/lib/libajaxdb.so -> libajaxdb.so.6.0.4
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/lib/emboss/lib/libensembl.so.6 -> libensembl.so.6.0.4
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/lib/emboss/lib/libensembl.so -> libensembl.so.6.0.4
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/lib/emboss/lib/libajaxg.so.6 -> libajaxg.so.6.0.4
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/lib/emboss/lib/libajaxg.so -> libajaxg.so.6.0.4
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/lib/emboss/lib/libeplplot.so.3 -> libeplplot.so.3.2.7
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/lib/emboss/lib/libajaxdb.so.6 -> libajaxdb.so.6.0.4
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/lib/emboss/lib/libeplplot.so -> libeplplot.so.3.2.7
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/lib/emboss/lib/libajax.so.6 -> libajax.so.6.0.4
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/lib/emboss/lib/libajax.so -> libajax.so.6.0.4
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/lib/emboss/lib/libacd.so.6 -> libacd.so.6.0.4
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/lib/emboss/lib/libnucleus.so.6 -> libnucleus.so.6.0.4
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/share/doc/emboss-lib/ChangeLog.gz -> changelog.gz
-
-
-jemboss_6.4.0-1_all.deb
+-rw-r--r-- root/root 9073 2012-06-21 15:12 ./usr/share/doc/emboss-lib/copyright
+-rw-r--r-- root/root 6905 2012-06-21 15:12 ./usr/share/doc/emboss-lib/changelog.Debian.gz
+drwxr-xr-x root/root 0 2012-06-21 15:22 ./usr/share/lintian/
+drwxr-xr-x root/root 0 2012-06-21 15:22 ./usr/share/lintian/overrides/
+-rw-r--r-- root/root 553 2012-06-21 15:12 ./usr/share/lintian/overrides/emboss-lib
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/lib/emboss/lib/libepcre.so.7 -> libepcre.so.7.0.9
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/lib/emboss/lib/libnucleus.so -> libnucleus.so.6.0.4
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/lib/emboss/lib/libacd.so -> libacd.so.6.0.4
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/lib/emboss/lib/libepcre.so -> libepcre.so.7.0.9
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/lib/emboss/lib/libajaxdb.so -> libajaxdb.so.6.0.4
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/lib/emboss/lib/libensembl.so.6 -> libensembl.so.6.0.4
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/lib/emboss/lib/libensembl.so -> libensembl.so.6.0.4
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/lib/emboss/lib/libajaxg.so.6 -> libajaxg.so.6.0.4
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/lib/emboss/lib/libajaxg.so -> libajaxg.so.6.0.4
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/lib/emboss/lib/libeplplot.so.3 -> libeplplot.so.3.2.7
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/lib/emboss/lib/libajaxdb.so.6 -> libajaxdb.so.6.0.4
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/lib/emboss/lib/libeplplot.so -> libeplplot.so.3.2.7
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/lib/emboss/lib/libajax.so.6 -> libajax.so.6.0.4
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/lib/emboss/lib/libajax.so -> libajax.so.6.0.4
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/lib/emboss/lib/libacd.so.6 -> libacd.so.6.0.4
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/lib/emboss/lib/libnucleus.so.6 -> libnucleus.so.6.0.4
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/share/doc/emboss-lib/ChangeLog.gz -> changelog.gz
+
+
+jemboss_6.4.0-2_all.deb
───────────────────────
new debian package, version 2.0.
- size 4114012 bytes: control archive=2316 bytes.
+ size 4113870 bytes: control archive=2318 bytes.
496 bytes, 13 lines control
4238 bytes, 53 lines md5sums
185 bytes, 7 lines * postinst #!/bin/sh
160 bytes, 5 lines * postrm #!/bin/sh
Package: jemboss
Source: emboss
- Version: 6.4.0-1
+ Version: 6.4.0-2
Architecture: all
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Installed-Size: 4544
@@ -18087,76 +18107,76 @@ jemboss_6.4.0-1_all.deb
Jemboss is a Graphical User Interface (GUI) to EMBOSS, the European Molecular
Biology Open Software Suite. It is part of the EMBOSS distribution.
-drwxr-xr-x root/root 0 2012-06-20 19:08 ./
-drwxr-xr-x root/root 0 2012-06-20 19:08 ./usr/
-drwxr-xr-x root/root 0 2012-06-20 19:08 ./usr/bin/
--rwxr-xr-x root/root 849 2012-06-20 19:08 ./usr/bin/runJemboss.csh
-drwxr-xr-x root/root 0 2012-06-20 19:08 ./usr/share/
-drwxr-xr-x root/root 0 2012-06-20 19:08 ./usr/share/menu/
--rw-r--r-- root/root 214 2012-06-20 19:00 ./usr/share/menu/jemboss
-drwxr-xr-x root/root 0 2012-06-20 19:08 ./usr/share/EMBOSS/
-drwxr-xr-x root/root 0 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/
-drwxr-xr-x root/root 0 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/lib/
--rw-r--r-- root/root 659266 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/lib/jalviewApplet.jar
--rw-r--r-- root/root 29871 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/lib/jakarta-regexp-1.2.jar
--rw-r--r-- root/root 639 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/lib/README
--rw-r--r-- root/root 733703 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/lib/jemboss.jar
--rw-r--r-- root/root 347137 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/lib/mail.jar
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--rw-r--r-- root/root 31605 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/lib/axis/commons-logging.jar
--rw-r--r-- root/root 80054 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/lib/axis/servlet.jar
--rw-r--r-- root/root 30296 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/lib/axis/axis-ant.jar
--rw-r--r-- root/root 19427 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/lib/axis/saaj.jar
--rw-r--r-- root/root 32071 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/lib/axis/jaxrpc.jar
--rw-r--r-- root/root 1478935 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/lib/axis/axis.jar
--rw-r--r-- root/root 74527 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/lib/axis/commons-discovery.jar
--rw-r--r-- root/root 120280 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/lib/axis/wsdl4j.jar
--rw-r--r-- root/root 352668 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/lib/axis/log4j-1.2.8.jar
--rw-r--r-- root/root 54829 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/lib/activation.jar
--rwxr-xr-x root/root 1183 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/runJemboss.sh
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--rwxr-xr-x root/root 235 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/utils/makeJar.csh
--rw-r--r-- root/root 1788 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/utils/template.html
--rw-r--r-- root/root 4643 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/utils/jws-launch-button.png
--rwxr-xr-x root/root 8695 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/utils/makeJNLP.sh
--rw-r--r-- root/root 526 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/utils/README
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--rwxr-xr-x root/root 1711 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/utils/keys.sh
--rwxr-xr-x root/root 42608 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/utils/install-jemboss-server.sh
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--rw-r--r-- root/root 591 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/images/Go_button.gif
--rw-r--r-- root/root 302 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/images/Forward_arrow_button.gif
--rw-r--r-- root/root 390 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/images/Information_button.gif
--rw-r--r-- root/root 1132 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/images/Jemboss_logo_small.gif
--rw-r--r-- root/root 308 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/images/Backward_arrow_button.gif
--rw-r--r-- root/root 5015 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/images/Jemboss_logo_large.gif
--rw-r--r-- root/root 1173 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/images/Jemboss_logo_greyback.gif
--rw-r--r-- root/root 1495 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/images/jay64.jpg
--rw-r--r-- root/root 331 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/images/Refresh_button.gif
--rw-r--r-- root/root 327 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/images/Refresh_button2.gif
--rw-r--r-- root/root 473 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/images/Job_manager_button.gif
--rw-r--r-- root/root 1910 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/README
--rw-r--r-- root/root 1493 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/readme.html
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--rw-r--r-- root/root 462 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/resources/jemboss.properties
--rw-r--r-- root/root 285937 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/resources/acdstore.jar
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--rw-r--r-- root/root 2860 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/resources/readme.html
--rw-r--r-- root/root 12 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/resources/version
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--rw-r--r-- root/root 2322 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/resources/readmeDNADraw.html
--rw-r--r-- root/root 66428 2012-06-20 19:08 ./usr/share/EMBOSS/jemboss/resources/resources.jar
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--rw-r--r-- root/root 260 2012-06-20 19:00 ./usr/share/applications/jemboss.desktop
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-drwxr-xr-x root/root 0 2012-06-20 19:08 ./usr/share/doc/jemboss/
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+-rw-r--r-- root/root 214 2012-06-21 15:12 ./usr/share/menu/jemboss
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+-rw-r--r-- root/root 29871 2012-06-21 15:22 ./usr/share/EMBOSS/jemboss/lib/jakarta-regexp-1.2.jar
+-rw-r--r-- root/root 639 2012-06-21 15:22 ./usr/share/EMBOSS/jemboss/lib/README
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+-rw-r--r-- root/root 74527 2012-06-21 15:22 ./usr/share/EMBOSS/jemboss/lib/axis/commons-discovery.jar
+-rw-r--r-- root/root 120280 2012-06-21 15:22 ./usr/share/EMBOSS/jemboss/lib/axis/wsdl4j.jar
+-rw-r--r-- root/root 352668 2012-06-21 15:22 ./usr/share/EMBOSS/jemboss/lib/axis/log4j-1.2.8.jar
+-rw-r--r-- root/root 54829 2012-06-21 15:22 ./usr/share/EMBOSS/jemboss/lib/activation.jar
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+-rw-r--r-- root/root 12 2012-06-21 15:22 ./usr/share/EMBOSS/jemboss/resources/version
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+drwxr-xr-x root/root 0 2012-06-21 15:22 ./usr/share/applications/
+-rw-r--r-- root/root 260 2012-06-21 15:12 ./usr/share/applications/jemboss.desktop
+drwxr-xr-x root/root 0 2012-06-21 15:22 ./usr/share/doc/
+drwxr-xr-x root/root 0 2012-06-21 15:22 ./usr/share/doc/jemboss/
-rw-r--r-- root/root 61626 2011-07-16 23:04 ./usr/share/doc/jemboss/changelog.gz
--rw-r--r-- root/root 9073 2012-06-20 19:00 ./usr/share/doc/jemboss/copyright
--rw-r--r-- root/root 6841 2012-06-20 19:00 ./usr/share/doc/jemboss/changelog.Debian.gz
-lrwxrwxrwx root/root 0 2012-06-20 19:08 ./usr/share/doc/jemboss/ChangeLog.gz -> changelog.gz
+-rw-r--r-- root/root 9073 2012-06-21 15:12 ./usr/share/doc/jemboss/copyright
+-rw-r--r-- root/root 6905 2012-06-21 15:12 ./usr/share/doc/jemboss/changelog.Debian.gz
+lrwxrwxrwx root/root 0 2012-06-21 15:22 ./usr/share/doc/jemboss/ChangeLog.gz -> changelog.gz
┌──────────────────────────────────────────────────────────────────────────────┐
@@ -18168,12 +18188,7 @@ lintian
───────
I: emboss source: missing-debian-source-format
-P: emboss: data.tar.xz-member-without-dpkg-pre-depends
-I: emboss: spelling-error-in-manpage usr/share/man/man1/notseq.1e.gz preceeded preceded
-I: emboss: spelling-error-in-manpage usr/share/man/man1/trimest.1e.gz preceeding preceding
-I: emboss: spelling-error-in-manpage usr/share/man/man1/twofeat.1e.gz ouput output
-W: emboss: binary-without-manpage usr/bin/acdgalaxy
-W: emboss: binary-without-manpage usr/bin/jembossctl
+W: jemboss: spelling-error-in-changelog independant independent
P: jemboss: data.tar.xz-member-without-dpkg-pre-depends
I: jemboss: extended-description-is-probably-too-short
W: jemboss: script-with-language-extension usr/bin/runJemboss.csh
@@ -18187,11 +18202,24 @@ W: jemboss: csh-considered-harmful usr/share/EMBOSS/jemboss/utils/makeJar.csh
I: emboss-lib: spelling-error-in-binary usr/lib/emboss/lib/libacd.so.6.0.4 Writeable Writable
I: emboss-lib: spelling-error-in-binary usr/lib/emboss/lib/libajax.so.6.0.4 nam name
I: emboss-lib: spelling-error-in-binary usr/lib/emboss/lib/libajaxg.so.6.0.4 xwindows X
+W: emboss-lib: spelling-error-in-changelog independant independent
P: emboss-lib: data.tar.xz-member-without-dpkg-pre-depends
W: emboss-lib: postinst-has-useless-call-to-ldconfig
W: emboss-lib: postrm-has-useless-call-to-ldconfig
+W: emboss-data: spelling-error-in-changelog independant independent
+P: emboss-data: data.tar.xz-member-without-dpkg-pre-depends
+I: emboss-data: extended-description-is-probably-too-short
+W: emboss-doc: spelling-error-in-changelog independant independent
P: emboss-doc: data.tar.xz-member-without-dpkg-pre-depends
I: emboss-doc: extended-description-is-probably-too-short
+W: emboss: spelling-error-in-changelog independant independent
+P: emboss: data.tar.xz-member-without-dpkg-pre-depends
+I: emboss: spelling-error-in-manpage usr/share/man/man1/notseq.1e.gz preceeded preceded
+I: emboss: spelling-error-in-manpage usr/share/man/man1/trimest.1e.gz preceeding preceding
+I: emboss: spelling-error-in-manpage usr/share/man/man1/twofeat.1e.gz ouput output
+W: emboss: binary-without-manpage usr/bin/acdgalaxy
+W: emboss: binary-without-manpage usr/bin/jembossctl
+W: emboss-test: spelling-error-in-changelog independant independent
P: emboss-test: data.tar.xz-member-without-dpkg-pre-depends
I: emboss-test: package-contains-empty-directory usr/share/EMBOSS/test/qa/cutgextract-keep/CODONS/
I: emboss-test: package-contains-empty-directory usr/share/EMBOSS/test/qa/cutgextract-outfile/CODONS/
@@ -18199,8 +18227,6 @@ I: emboss-test: package-contains-empty-directory usr/share/EMBOSS/test/qa/cutgex
W: emboss-test: csh-considered-harmful usr/share/EMBOSS/test/memtest/purify.csh
W: emboss-test: csh-considered-harmful usr/share/EMBOSS/test/memtest/valgrind.csh
W: emboss-test: csh-considered-harmful usr/share/EMBOSS/test/qa/qatest.csh
-P: emboss-data: data.tar.xz-member-without-dpkg-pre-depends
-I: emboss-data: extended-description-is-probably-too-short
N: 1 tag overridden (1 error)
I: Lintian run was successful.
@@ -18217,18 +18243,18 @@ Not cleaning session: cloned chroot in use
└──────────────────────────────────────────────────────────────────────────────┘
Architecture: amd64
-Build-Space: 1424864
-Build-Time: 717
+Build-Space: 1343436
+Build-Time: 836
Distribution: unstable
-Install-Time: 185
-Job: emboss_6.4.0-1.dsc
+Install-Time: 152
+Job: emboss_6.4.0-2.dsc
Lintian: pass
Package: emboss
-Package-Time: 910
-Source-Version: 6.4.0-1
-Space: 1424864
+Package-Time: 1017
+Source-Version: 6.4.0-2
+Space: 1343436
Status: successful
-Version: 6.4.0-1
+Version: 6.4.0-2
────────────────────────────────────────────────────────────────────────────────
-Finished at 20120620-1912
-Build needed 00:15:10, 1424864k disc space
+Finished at 20120621-1526
+Build needed 00:16:57, 1343436k disc space
diff --git a/changes b/changes
index 726fcb5..d686715 100644
--- a/changes
+++ b/changes
@@ -2,11 +2,11 @@
Hash: SHA256
Format: 1.8
-Date: Wed, 20 Jun 2012 18:55:16 +0900
+Date: Thu, 21 Jun 2012 14:31:59 +0900
Source: emboss
Binary: emboss emboss-data emboss-doc emboss-test emboss-lib jemboss
Architecture: source amd64 all
-Version: 6.4.0-1
+Version: 6.4.0-2
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
@@ -18,77 +18,53 @@ Description:
emboss-lib - EMBOSS Libraries
emboss-test - test files for the EMBOSS package
jemboss - graphical user interface to EMBOSS
-Closes: 595613 662313
Changes:
- emboss (6.4.0-1) unstable; urgency=low
+ emboss (6.4.0-2) unstable; urgency=low
.
- [ Charles Plessy ]
- * New upstream release.
- * Removed calls to dh_makeshlibs in debian/rules (closes: #595613).
- * Build on libpng-dev instead of libpng12-dev (closes: #662313).
- * Breaks: EMBASSY <= 6.3.1 (debian/control).
- .
- [ Andreas Tille ]
- * debian/upstream: separate reference section
- * debian/rules:
- - Make sure every binary package has a changelog file
- - enable hardening
- - do not clean backup file which is part of upstream tarball
- - remove executable flag from some test data
- - restore executable flag of some jemboss utils which seems to
- be removed by install target
- * debian/control:
- - remove article from description
- - Standards-Version: 3.9.3 (no changes needed)
- * debian/emboss.menu: delete - chances that users will pick command
- line programs from longish menu entries are pretty low
- * debian/emboss-lib.lintian-overrides: Adapted string of lintian
- warning
+ * Separate architecture-dependant and independant targets in debian/rules.
+ This makes the package buildable again on our build farm.
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- ee16e1d2bba867d517d2c3d3dc5ee8ec 4114012 science optional jemboss_6.4.0-1_all.deb
+ b3fa66a40647248c7974d5877bc1f8a1 2407 science optional emboss_6.4.0-2.dsc
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diff --git a/dsc b/dsc
index 27a9ced..bfb8616 100644
--- a/dsc
+++ b/dsc
@@ -5,7 +5,7 @@ Format: 1.0
Source: emboss
Binary: emboss, emboss-data, emboss-doc, emboss-test, emboss-lib, jemboss
Architecture: any all
-Version: 6.4.0-1
+Version: 6.4.0-2
Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy at debian.org>, Nelson A. de Oliveira <naoliv at debian.org>, Andreas Tille <tille at debian.org>
Dm-Upload-Allowed: yes
@@ -23,28 +23,28 @@ Package-List:
jemboss deb science optional
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diff --git a/upload b/upload
index 5b949e2..a602879 100644
--- a/upload
+++ b/upload
@@ -1,11 +1,10 @@
-u jemboss_6.4.0-1_all.deb ftp.upload.debian.org Wed Jun 20 20:08:46 2012
-u emboss-test_6.4.0-1_all.deb ftp.upload.debian.org Wed Jun 20 20:08:51 2012
-u emboss-lib_6.4.0-1_amd64.deb ftp.upload.debian.org Wed Jun 20 20:08:55 2012
-u emboss_6.4.0-1.dsc ftp.upload.debian.org Wed Jun 20 20:08:56 2012
-u emboss-doc_6.4.0-1_all.deb ftp.upload.debian.org Wed Jun 20 20:09:00 2012
-u emboss_6.4.0.orig.tar.gz ftp.upload.debian.org Wed Jun 20 20:10:02 2012
-u emboss-data_6.4.0-1_all.deb ftp.upload.debian.org Wed Jun 20 20:10:27 2012
-u emboss_6.4.0-1_amd64.deb ftp.upload.debian.org Wed Jun 20 20:10:29 2012
-u emboss_6.4.0-1.diff.gz ftp.upload.debian.org Wed Jun 20 20:10:32 2012
-u emboss_6.4.0-1_amd64.changes ftp.upload.debian.org Wed Jun 20 20:10:33 2012
-s emboss_6.4.0-1_amd64.changes ftp.upload.debian.org Wed Jun 20 20:10:33 2012
+u jemboss_6.4.0-2_all.deb ftp.upload.debian.org Thu Jun 21 15:30:37 2012
+u emboss-test_6.4.0-2_all.deb ftp.upload.debian.org Thu Jun 21 15:30:40 2012
+u emboss_6.4.0-2.diff.gz ftp.upload.debian.org Thu Jun 21 15:30:42 2012
+u emboss-doc_6.4.0-2_all.deb ftp.upload.debian.org Thu Jun 21 15:30:46 2012
+u emboss_6.4.0-2_amd64.deb ftp.upload.debian.org Thu Jun 21 15:30:49 2012
+u emboss-data_6.4.0-2_all.deb ftp.upload.debian.org Thu Jun 21 15:31:13 2012
+u emboss-lib_6.4.0-2_amd64.deb ftp.upload.debian.org Thu Jun 21 15:31:17 2012
+u emboss_6.4.0-2.dsc ftp.upload.debian.org Thu Jun 21 15:31:18 2012
+u emboss_6.4.0-2_amd64.changes ftp.upload.debian.org Thu Jun 21 15:31:20 2012
+s emboss_6.4.0-2_amd64.changes ftp.upload.debian.org Thu Jun 21 15:31:20 2012
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The European Molecular Biology Open Software Suite.
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